Wall clock time and date at job start Tue Mar 31 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 119.99686 * 2 1 4 4 N 1.34775 * 119.99870 * 180.02562 * 2 1 3 5 5 C 1.46491 * 120.00039 * 179.97438 * 4 2 1 6 6 H 1.09002 * 110.78621 * 328.24466 * 5 4 2 7 7 C 1.54939 * 110.72743 * 91.49273 * 5 4 2 8 8 N 1.48532 * 103.22867 * 155.76994 * 7 5 4 9 9 C 1.46897 * 111.00306 * 200.28127 * 8 7 5 10 10 C 1.50697 * 109.47064 * 307.40169 * 9 8 7 11 11 O 1.21294 * 120.00312 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00173 * 179.97438 * 10 9 8 13 13 C 1.37098 * 119.99998 * 179.97438 * 12 10 9 14 14 H 1.07993 * 119.99946 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99698 * 179.97438 * 13 12 10 16 16 N 1.31401 * 119.99656 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99863 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46844 * 89.99962 * 17 15 13 19 19 H 1.48502 * 109.46984 * 209.99726 * 17 15 13 20 20 H 1.48494 * 109.47454 * 330.00259 * 17 15 13 21 21 C 1.47901 * 105.82396 * 320.79773 * 8 7 5 22 22 C 1.53997 * 107.05724 * 25.32897 * 21 8 7 23 23 C 1.52997 * 110.31228 * 117.69217 * 22 21 8 24 24 C 1.53003 * 110.30892 * 239.76383 * 22 21 8 25 25 H 1.09004 * 109.47401 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47190 * 299.99821 * 1 2 3 27 27 H 1.09002 * 109.47670 * 59.99336 * 1 2 3 28 28 H 0.97002 * 119.99680 * 359.97438 * 4 2 1 29 29 H 1.09002 * 110.66320 * 37.34274 * 7 5 4 30 30 H 1.08998 * 110.81412 * 274.27723 * 7 5 4 31 31 H 1.09000 * 109.47209 * 67.39878 * 9 8 7 32 32 H 1.08997 * 109.47266 * 187.39674 * 9 8 7 33 33 H 0.96998 * 119.99383 * 0.02562 * 12 10 9 34 34 H 0.97005 * 120.00097 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.91957 * 265.97750 * 21 8 7 36 36 H 1.09004 * 110.08512 * 144.76723 * 21 8 7 37 37 H 1.09002 * 109.47153 * 61.45259 * 23 22 21 38 38 H 1.09001 * 109.46832 * 301.45450 * 23 22 21 39 39 H 1.09004 * 109.47261 * 181.45431 * 23 22 21 40 40 H 1.08998 * 109.47067 * 297.20629 * 24 22 21 41 41 H 1.08998 * 109.47394 * 57.20431 * 24 22 21 42 42 H 1.09001 * 109.46932 * 177.20952 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 1 4.0324 -0.3006 -0.5374 7 6 4.1947 -1.2053 1.4473 8 7 5.5481 -1.7947 1.2825 9 6 6.0380 -2.3512 2.5506 10 6 5.9387 -1.3045 3.6302 11 8 5.5031 -0.2031 3.3689 12 7 6.3339 -1.5923 4.8862 13 6 6.2439 -0.6399 5.8683 14 1 5.8561 0.3408 5.6355 15 6 6.6509 -0.9367 7.1633 16 7 6.5642 -0.0241 8.1047 17 14 7.3211 -2.6333 7.5659 18 1 8.7926 -2.6443 7.3665 19 1 7.0106 -2.9654 8.9797 20 1 6.6930 -3.6387 6.6717 21 6 5.4053 -2.8530 0.2592 22 6 4.1927 -2.4776 -0.6127 23 6 4.6307 -2.2458 -2.0601 24 6 3.1320 -3.5786 -0.5495 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6958 -2.0072 -0.0005 29 1 3.5727 -1.8407 2.0778 30 1 4.2609 -0.1999 1.8630 31 1 5.4335 -3.2155 2.8257 32 1 7.0779 -2.6570 2.4355 33 1 6.6825 -2.4730 5.0951 34 1 6.8480 -0.2314 9.0088 35 1 5.2322 -3.8150 0.7416 36 1 6.3037 -2.9026 -0.3560 37 1 5.0597 -3.1640 -2.4614 38 1 5.3772 -1.4521 -2.0911 39 1 3.7673 -1.9561 -2.6591 40 1 3.5414 -4.5014 -0.9606 41 1 2.8387 -3.7415 0.4875 42 1 2.2605 -3.2772 -1.1306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675425981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:01 Heat of formation + Delta-G solvation = -56.984455 kcal Electronic energy + Delta-G solvation = -23203.295101 eV Core-core repulsion = 19797.730949 eV Total energy + Delta-G solvation = -3405.564152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47498 -38.92288 -37.95684 -34.78893 -33.91150 -33.21800 -31.68899 -30.43008 -28.69019 -27.63485 -27.11080 -25.07484 -23.52177 -21.52968 -20.35004 -19.55578 -19.16536 -18.18061 -17.04449 -16.38283 -15.96892 -15.28581 -15.17247 -14.90543 -14.49093 -14.28479 -14.08678 -13.76776 -13.53312 -13.28237 -12.96379 -12.85641 -12.70292 -12.40422 -12.32714 -12.18691 -11.90975 -11.77110 -11.70188 -11.36762 -11.14575 -11.02655 -10.79415 -10.59919 -10.54363 -9.96674 -9.84535 -9.55369 -9.00018 -8.46743 -8.18866 -7.99962 -6.30302 -3.81656 2.67826 3.01900 3.06893 3.14670 3.16737 3.73304 4.07724 4.11642 4.36622 4.55446 4.66033 4.77242 4.85310 5.03187 5.15892 5.18240 5.22013 5.30191 5.31045 5.44361 5.49454 5.54891 5.60057 5.65879 5.68008 5.79033 5.84189 5.90718 5.93086 5.94982 6.13110 6.20078 6.45859 6.71380 7.13003 7.20538 7.50014 7.58767 8.16078 8.26462 8.60535 8.96280 9.42855 9.83719 10.82837 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.004329 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.334515 B = 6465.825290 C = 7305.515429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.506 3.494 3 O -0.539 6.539 4 N -0.724 5.724 5 C 0.144 3.856 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.492 5.492 9 C 0.035 3.965 10 C 0.449 3.551 11 O -0.558 6.558 12 N -0.589 5.589 13 C -0.304 4.304 14 H 0.120 0.880 15 C 0.042 3.958 16 N -0.881 5.881 17 Si 0.879 3.121 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.042 3.958 22 C -0.084 4.084 23 C -0.134 4.134 24 C -0.146 4.146 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.398 0.602 29 H 0.037 0.963 30 H 0.124 0.876 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.370 0.630 34 H 0.273 0.727 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.589 -11.989 -18.165 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.293 3.707 3 O -0.415 6.415 4 N -0.378 5.378 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.097 4.097 8 N -0.217 5.217 9 C -0.097 4.097 10 C 0.235 3.765 11 O -0.440 6.440 12 N -0.229 5.229 13 C -0.433 4.433 14 H 0.138 0.862 15 C -0.161 4.161 16 N -0.521 5.521 17 Si 0.706 3.294 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.196 1.196 21 C -0.086 4.086 22 C -0.085 4.085 23 C -0.192 4.192 24 C -0.204 4.204 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.235 0.765 29 H 0.055 0.945 30 H 0.141 0.859 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.035 -10.015 -18.257 22.320 hybrid contribution -0.183 -2.554 0.957 2.734 sum -8.219 -12.569 -17.300 22.908 Atomic orbital electron populations 1.21850 0.91986 1.03870 1.05301 1.20817 0.90502 0.83734 0.75631 1.90768 1.70580 1.31313 1.48816 1.46282 1.07141 1.08725 1.75691 1.22051 0.79020 0.97962 0.97090 0.87765 1.23855 0.87451 1.03932 0.94509 1.64549 1.24350 1.26480 1.06271 1.22142 1.01606 0.95928 0.89997 1.19637 0.84423 0.89412 0.83043 1.90517 1.48801 1.23737 1.80930 1.42189 1.58282 1.13881 1.08506 1.19442 1.40631 0.96048 0.87182 0.86234 1.25034 0.97750 0.97868 0.95464 1.69621 1.46815 1.33421 1.02227 0.86676 0.79967 0.83894 0.78863 1.19553 1.20194 1.19603 1.23087 0.97495 0.93797 0.94246 1.21649 0.95522 0.94973 0.96334 1.21841 1.01370 1.01928 0.94014 1.21914 0.98463 0.98123 1.01857 0.90906 0.88645 0.88917 0.76468 0.94479 0.85866 0.93325 0.88938 0.79733 0.91616 0.93602 0.89991 0.92440 0.91742 0.92695 0.91762 0.92325 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.39 36.01 0.37 -1.04 16 2 C 0.51 6.70 7.94 -10.99 -0.09 6.61 16 3 O -0.54 -10.00 16.75 5.56 0.09 -9.91 16 4 N -0.72 -8.28 4.92 -52.01 -0.26 -8.54 16 5 C 0.14 1.98 2.85 -66.07 -0.19 1.79 16 6 H 0.10 1.68 7.27 -51.93 -0.38 1.31 16 7 C 0.03 0.54 4.99 -1.90 -0.01 0.53 16 8 N -0.49 -8.12 5.26 -231.89 -1.22 -9.34 16 9 C 0.04 0.60 5.52 -4.98 -0.03 0.58 16 10 C 0.45 10.39 7.49 -10.98 -0.08 10.30 16 11 O -0.56 -15.15 13.09 5.55 0.07 -15.08 16 12 N -0.59 -14.22 5.09 -10.96 -0.06 -14.27 16 13 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 14 H 0.12 3.92 7.39 -52.49 -0.39 3.54 16 15 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 16 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 17 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.44 6.52 56.52 0.37 -5.08 16 21 C 0.04 0.51 6.03 -2.75 -0.02 0.49 16 22 C -0.08 -0.87 0.95 -153.15 -0.15 -1.01 16 23 C -0.13 -1.22 8.22 37.16 0.31 -0.91 16 24 C -0.15 -1.14 7.05 37.16 0.26 -0.88 16 25 H 0.07 0.39 7.91 -51.93 -0.41 -0.02 16 26 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.40 3.31 5.77 -40.82 -0.24 3.07 16 29 H 0.04 0.64 8.02 -51.93 -0.42 0.23 16 30 H 0.12 2.78 5.96 -51.93 -0.31 2.47 16 31 H 0.05 0.74 7.81 -51.93 -0.41 0.33 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.05 0.50 7.11 -51.93 -0.37 0.13 16 36 H 0.08 0.91 7.68 -51.93 -0.40 0.51 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.48 8.01 -51.93 -0.42 0.07 16 42 H 0.06 0.39 6.90 -51.93 -0.36 0.03 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -35.36 335.49 -6.56 -41.92 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.45 Total: 11.96 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 0.14 Total: 8.65 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.76 Total: -57.36 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.17 Total: -24.99 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.36 -6.56 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675425981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.060 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds