Wall clock time and date at job start Tue Mar 31 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 119.99686 * 2 1 4 4 N 1.34775 * 119.99870 * 180.02562 * 2 1 3 5 5 C 1.46491 * 120.00039 * 179.97438 * 4 2 1 6 6 H 1.09002 * 110.78621 * 328.24466 * 5 4 2 7 7 C 1.54939 * 110.72743 * 91.49273 * 5 4 2 8 8 N 1.48532 * 103.22867 * 155.76994 * 7 5 4 9 9 C 1.46897 * 111.00306 * 200.28127 * 8 7 5 10 10 C 1.50697 * 109.47064 * 307.40169 * 9 8 7 11 11 O 1.21294 * 120.00312 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00173 * 179.97438 * 10 9 8 13 13 C 1.37098 * 119.99998 * 179.97438 * 12 10 9 14 14 H 1.07993 * 119.99946 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99698 * 179.97438 * 13 12 10 16 16 N 1.31401 * 119.99656 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99863 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46844 * 89.99962 * 17 15 13 19 19 H 1.48502 * 109.46984 * 209.99726 * 17 15 13 20 20 H 1.48494 * 109.47454 * 330.00259 * 17 15 13 21 21 C 1.47901 * 105.82396 * 320.79773 * 8 7 5 22 22 C 1.53997 * 107.05724 * 25.32897 * 21 8 7 23 23 C 1.52997 * 110.31228 * 117.69217 * 22 21 8 24 24 C 1.53003 * 110.30892 * 239.76383 * 22 21 8 25 25 H 1.09004 * 109.47401 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47190 * 299.99821 * 1 2 3 27 27 H 1.09002 * 109.47670 * 59.99336 * 1 2 3 28 28 H 0.97002 * 119.99680 * 359.97438 * 4 2 1 29 29 H 1.09002 * 110.66320 * 37.34274 * 7 5 4 30 30 H 1.08998 * 110.81412 * 274.27723 * 7 5 4 31 31 H 1.09000 * 109.47209 * 67.39878 * 9 8 7 32 32 H 1.08997 * 109.47266 * 187.39674 * 9 8 7 33 33 H 0.96998 * 119.99383 * 0.02562 * 12 10 9 34 34 H 0.97005 * 120.00097 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.91957 * 265.97750 * 21 8 7 36 36 H 1.09004 * 110.08512 * 144.76723 * 21 8 7 37 37 H 1.09002 * 109.47153 * 61.45259 * 23 22 21 38 38 H 1.09001 * 109.46832 * 301.45450 * 23 22 21 39 39 H 1.09004 * 109.47261 * 181.45431 * 23 22 21 40 40 H 1.08998 * 109.47067 * 297.20629 * 24 22 21 41 41 H 1.08998 * 109.47394 * 57.20431 * 24 22 21 42 42 H 1.09001 * 109.46932 * 177.20952 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 1 4.0324 -0.3006 -0.5374 7 6 4.1947 -1.2053 1.4473 8 7 5.5481 -1.7947 1.2825 9 6 6.0380 -2.3512 2.5506 10 6 5.9387 -1.3045 3.6302 11 8 5.5031 -0.2031 3.3689 12 7 6.3339 -1.5923 4.8862 13 6 6.2439 -0.6399 5.8683 14 1 5.8561 0.3408 5.6355 15 6 6.6509 -0.9367 7.1633 16 7 6.5642 -0.0241 8.1047 17 14 7.3211 -2.6333 7.5659 18 1 8.7926 -2.6443 7.3665 19 1 7.0106 -2.9654 8.9797 20 1 6.6930 -3.6387 6.6717 21 6 5.4053 -2.8530 0.2592 22 6 4.1927 -2.4776 -0.6127 23 6 4.6307 -2.2458 -2.0601 24 6 3.1320 -3.5786 -0.5495 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6958 -2.0072 -0.0005 29 1 3.5727 -1.8407 2.0778 30 1 4.2609 -0.1999 1.8630 31 1 5.4335 -3.2155 2.8257 32 1 7.0779 -2.6570 2.4355 33 1 6.6825 -2.4730 5.0951 34 1 6.8480 -0.2314 9.0088 35 1 5.2322 -3.8150 0.7416 36 1 6.3037 -2.9026 -0.3560 37 1 5.0597 -3.1640 -2.4614 38 1 5.3772 -1.4521 -2.0911 39 1 3.7673 -1.9561 -2.6591 40 1 3.5414 -4.5014 -0.9606 41 1 2.8387 -3.7415 0.4875 42 1 2.2605 -3.2772 -1.1306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675425981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:01 Heat of formation + Delta-G solvation = -87.645810 kcal Electronic energy + Delta-G solvation = -23204.624678 eV Core-core repulsion = 19797.730949 eV Total energy + Delta-G solvation = -3406.893728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61007 -40.41010 -39.42140 -36.30238 -35.63390 -34.30228 -33.80192 -31.38784 -29.92560 -28.41059 -28.21422 -26.68923 -24.90542 -22.80929 -21.45007 -21.36052 -20.43067 -19.93833 -18.14863 -17.64593 -17.43805 -16.83420 -16.49351 -16.32944 -15.80702 -15.72928 -15.09967 -15.02929 -14.78948 -14.59168 -14.38372 -14.18926 -14.04258 -13.50057 -13.25040 -13.13762 -13.11833 -13.03613 -12.78957 -12.54582 -12.48924 -12.43533 -11.99322 -11.85269 -11.76309 -11.58929 -11.50320 -10.99507 -10.36068 -10.28539 -10.02016 -9.34173 -8.43601 -6.05205 1.27882 1.34461 1.43233 1.61604 1.91094 2.18216 2.21409 2.69865 3.11792 3.25507 3.44785 3.61368 3.87004 3.96161 4.07427 4.18020 4.28648 4.32370 4.36875 4.46256 4.48529 4.64208 4.67446 4.76677 4.81908 4.85561 4.98015 5.04563 5.07458 5.11740 5.20722 5.32438 5.40999 5.48734 5.50757 5.83159 5.90470 6.07221 6.55605 6.56981 6.85832 7.27697 7.35643 7.94393 8.74397 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.004329 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.334515 B = 6465.825290 C = 7305.515429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.495 3.505 3 O -0.605 6.605 4 N -0.708 5.708 5 C 0.149 3.851 6 H 0.069 0.931 7 C 0.038 3.962 8 N -0.517 5.517 9 C 0.047 3.953 10 C 0.444 3.556 11 O -0.608 6.608 12 N -0.588 5.588 13 C -0.330 4.330 14 H 0.050 0.950 15 C -0.015 4.015 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.230 1.230 21 C 0.042 3.958 22 C -0.073 4.073 23 C -0.131 4.131 24 C -0.144 4.144 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.418 0.582 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.390 0.610 34 H 0.280 0.720 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 -17.479 -19.893 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.284 3.716 3 O -0.486 6.486 4 N -0.363 5.363 5 C 0.042 3.958 6 H 0.088 0.912 7 C -0.092 4.092 8 N -0.242 5.242 9 C -0.084 4.084 10 C 0.232 3.768 11 O -0.493 6.493 12 N -0.230 5.230 13 C -0.460 4.460 14 H 0.069 0.931 15 C -0.213 4.213 16 N -0.576 5.576 17 Si 0.787 3.213 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.153 1.153 21 C -0.086 4.086 22 C -0.074 4.074 23 C -0.188 4.188 24 C -0.201 4.201 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.259 0.741 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.226 0.774 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.286 -15.571 -20.022 26.683 hybrid contribution -0.146 -0.683 1.454 1.613 sum -8.433 -16.254 -18.567 26.078 Atomic orbital electron populations 1.21878 0.87604 1.06630 1.05884 1.21857 0.92668 0.83032 0.74017 1.90743 1.72308 1.33697 1.51860 1.46187 1.06325 1.09365 1.74422 1.21780 0.80308 0.99103 0.94571 0.91250 1.23488 0.88748 1.00387 0.96539 1.64458 1.23721 1.29090 1.06918 1.22118 1.04275 0.94090 0.87933 1.20969 0.81927 0.90108 0.83821 1.90546 1.50194 1.26632 1.81909 1.41992 1.59057 1.13862 1.08081 1.18981 1.42517 0.95022 0.89446 0.93146 1.26159 0.97107 1.03884 0.94195 1.69812 1.47845 1.36848 1.03051 0.85328 0.79686 0.77012 0.79229 1.18037 1.19856 1.15312 1.23251 0.98853 0.93233 0.93216 1.21643 0.95713 0.93549 0.96492 1.21824 1.01264 1.02589 0.93157 1.21933 0.98086 0.97744 1.02363 0.87050 0.88815 0.87426 0.74145 0.94660 0.92459 0.89869 0.85730 0.77394 0.91069 0.91052 0.88597 0.89812 0.93606 0.92165 0.89447 0.92465 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.39 71.24 0.74 -1.67 16 2 C 0.50 13.38 7.94 87.66 0.70 14.08 16 3 O -0.60 -24.30 16.75 -3.02 -0.05 -24.36 16 4 N -0.71 -15.76 4.92 -436.84 -2.15 -17.91 16 5 C 0.15 4.15 2.85 46.20 0.13 4.28 16 6 H 0.07 2.43 7.27 -2.39 -0.02 2.41 16 7 C 0.04 1.36 4.99 86.65 0.43 1.80 16 8 N -0.52 -16.65 5.26 -887.58 -4.67 -21.32 16 9 C 0.05 1.51 5.52 85.56 0.47 1.98 16 10 C 0.44 21.02 7.49 87.66 0.66 21.67 16 11 O -0.61 -35.70 13.09 -3.07 -0.04 -35.74 16 12 N -0.59 -28.58 5.09 -306.98 -1.56 -30.15 16 13 C -0.33 -19.96 10.16 84.04 0.85 -19.10 16 14 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 15 C -0.01 -0.84 5.50 84.93 0.47 -0.38 16 16 N -0.94 -57.53 13.96 21.66 0.30 -57.22 16 17 Si 0.97 39.12 27.74 68.60 1.90 41.02 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 21 C 0.04 0.86 6.03 86.45 0.52 1.38 16 22 C -0.07 -1.32 0.95 -51.30 -0.05 -1.37 16 23 C -0.13 -2.02 8.22 71.98 0.59 -1.43 16 24 C -0.14 -1.57 7.05 71.98 0.51 -1.06 16 25 H 0.11 0.79 7.91 -2.38 -0.02 0.77 16 26 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.42 5.81 5.77 -92.71 -0.54 5.28 16 29 H 0.04 1.24 8.02 -2.39 -0.02 1.23 16 30 H 0.06 2.86 5.96 -2.39 -0.01 2.85 16 31 H 0.08 2.14 7.81 -2.39 -0.02 2.13 16 32 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.39 15.50 5.76 -92.71 -0.53 14.97 16 34 H 0.28 15.66 8.31 -92.70 -0.77 14.89 16 35 H 0.07 1.15 7.11 -2.39 -0.02 1.13 16 36 H 0.10 1.74 7.68 -2.38 -0.02 1.72 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.04 0.88 8.13 -2.39 -0.02 0.86 16 39 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.68 8.01 -2.39 -0.02 0.66 16 42 H 0.08 0.61 6.90 -2.39 -0.02 0.59 16 Total: -1.00 -90.03 335.49 -0.34 -90.37 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.09 Total: 35.12 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 6.02 Total: 20.18 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -8.08 Total: -126.60 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -0.09 Total: -60.09 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.02 kcal Total: -90.03 -0.34 -90.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675425981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.723 kcal (2) G-P(sol) polarization free energy of solvation -90.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds