Wall clock time and date at job start Tue Mar 31 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 120.00263 * 2 1 4 4 N 1.34777 * 119.99758 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99853 * 180.02562 * 4 2 1 6 6 H 1.09006 * 110.78242 * 36.79014 * 5 4 2 7 7 C 1.54935 * 110.72040 * 273.54143 * 5 4 2 8 8 N 1.48529 * 103.37525 * 204.30908 * 7 5 4 9 9 C 1.46904 * 111.00232 * 159.63573 * 8 7 5 10 10 C 1.50695 * 109.47539 * 183.58590 * 9 8 7 11 11 O 1.21297 * 119.99923 * 354.03827 * 10 9 8 12 12 N 1.34777 * 120.00358 * 174.03979 * 10 9 8 13 13 C 1.37092 * 120.00025 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00389 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99577 * 179.97438 * 13 12 10 16 16 N 1.31409 * 120.00578 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99751 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47546 * 90.00058 * 17 15 13 19 19 H 1.48499 * 109.47036 * 209.99899 * 17 15 13 20 20 H 1.48498 * 109.47265 * 329.99871 * 17 15 13 21 21 C 1.47900 * 105.82023 * 39.12528 * 8 7 5 22 22 C 1.53993 * 107.05989 * 334.66790 * 21 8 7 23 23 C 1.53003 * 110.30794 * 120.13799 * 22 21 8 24 24 C 1.52993 * 110.31159 * 242.21062 * 22 21 8 25 25 H 1.08997 * 109.47440 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47124 * 300.00027 * 1 2 3 27 27 H 1.09007 * 109.47167 * 59.99894 * 1 2 3 28 28 H 0.96997 * 120.00166 * 359.97438 * 4 2 1 29 29 H 1.09002 * 110.66686 * 85.79346 * 7 5 4 30 30 H 1.08999 * 110.66868 * 322.83232 * 7 5 4 31 31 H 1.08996 * 109.47017 * 303.58932 * 9 8 7 32 32 H 1.09007 * 109.46542 * 63.58589 * 9 8 7 33 33 H 0.97006 * 119.99525 * 0.02562 * 12 10 9 34 34 H 0.96998 * 120.00848 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.91976 * 94.02274 * 21 8 7 36 36 H 1.09006 * 109.92028 * 215.11469 * 21 8 7 37 37 H 1.08999 * 109.46869 * 61.45971 * 23 22 21 38 38 H 1.09004 * 109.46649 * 181.45614 * 23 22 21 39 39 H 1.09003 * 109.47257 * 301.45387 * 23 22 21 40 40 H 1.09007 * 109.47317 * 58.54277 * 24 22 21 41 41 H 1.09004 * 109.47453 * 178.54360 * 24 22 21 42 42 H 1.08999 * 109.46999 * 298.54471 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 0.0000 6 1 4.0324 -0.3515 0.6111 7 6 4.1946 -1.0768 -1.4460 8 7 5.5478 -1.6795 -1.3384 9 6 6.0333 -2.1217 -2.6525 10 6 7.3666 -2.8053 -2.4915 11 8 7.9145 -2.8187 -1.4095 12 7 7.9503 -3.4017 -3.5499 13 6 9.1630 -4.0240 -3.4033 14 1 9.6509 -4.0360 -2.4399 15 6 9.7645 -4.6393 -4.4943 16 7 9.1708 -4.6251 -5.6665 17 14 11.4166 -5.4879 -4.2944 18 1 11.2012 -6.9103 -3.9262 19 1 12.1679 -5.4160 -5.5733 20 1 12.1941 -4.8120 -3.2249 21 6 5.4068 -2.8245 -0.4128 22 6 4.1972 -2.5270 0.4927 23 6 3.1341 -3.6158 0.3333 24 6 4.6395 -2.4276 1.9539 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6958 -2.0073 -0.0005 29 1 4.2609 -0.0375 -1.7681 30 1 3.5708 -1.6513 -2.1309 31 1 5.3178 -2.8189 -3.0884 32 1 6.1446 -1.2579 -3.3081 33 1 7.5123 -3.3905 -4.4153 34 1 9.5904 -5.0550 -6.4281 35 1 5.2311 -3.7397 -0.9783 36 1 6.3091 -2.9281 0.1900 37 1 3.5501 -4.5768 0.6360 38 1 2.2744 -3.3785 0.9600 39 1 2.8206 -3.6677 -0.7093 40 1 5.3878 -1.6414 2.0544 41 1 3.7782 -2.1915 2.5790 42 1 5.0675 -3.3791 2.2695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675425982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:04 Heat of formation + Delta-G solvation = -67.707570 kcal Electronic energy + Delta-G solvation = -22968.789923 eV Core-core repulsion = 19562.760782 eV Total energy + Delta-G solvation = -3406.029141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.49997 -38.93850 -37.78508 -34.77888 -33.80430 -33.34260 -31.22491 -30.53676 -28.67528 -27.51097 -26.84861 -25.17041 -23.73878 -21.57441 -20.39184 -19.31828 -19.10195 -17.86601 -17.10893 -16.40154 -15.85738 -15.50313 -15.25107 -14.69011 -14.54367 -14.20550 -13.98498 -13.67038 -13.51169 -13.35224 -13.05784 -12.83438 -12.69457 -12.46407 -12.30166 -11.96966 -11.84324 -11.63428 -11.49669 -11.24310 -11.04686 -10.80540 -10.72659 -10.49016 -10.38906 -10.21685 -10.02079 -9.48684 -9.18042 -8.42483 -7.99605 -7.91340 -6.41297 -3.82029 2.48904 3.02619 3.17746 3.26525 3.32715 3.91470 4.10713 4.30628 4.37338 4.58870 4.68059 4.79522 4.89738 5.02315 5.11891 5.20229 5.24180 5.25424 5.34721 5.46441 5.50997 5.64690 5.71711 5.75822 5.80636 5.86731 5.92685 5.99681 6.05548 6.14003 6.25790 6.29060 6.39822 6.56289 7.20459 7.23665 7.35772 7.55548 8.06551 8.08069 8.62262 9.18515 9.54822 10.06617 10.76537 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.003434 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.876156 B = 8151.500380 C = 8505.316036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.545 6.545 4 N -0.723 5.723 5 C 0.149 3.851 6 H 0.103 0.897 7 C 0.025 3.975 8 N -0.489 5.489 9 C 0.038 3.962 10 C 0.443 3.557 11 O -0.578 6.578 12 N -0.564 5.564 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.056 3.944 22 C -0.085 4.085 23 C -0.147 4.147 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.401 0.599 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.392 0.608 34 H 0.271 0.729 35 H 0.043 0.957 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.266 2.657 9.028 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.422 6.422 4 N -0.378 5.378 5 C 0.044 3.956 6 H 0.121 0.879 7 C -0.104 4.104 8 N -0.213 5.213 9 C -0.094 4.094 10 C 0.228 3.772 11 O -0.461 6.461 12 N -0.201 5.201 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.072 4.072 22 C -0.086 4.086 23 C -0.204 4.204 24 C -0.191 4.191 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.238 0.762 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.002 3.692 9.761 19.949 hybrid contribution -0.282 -1.513 -1.103 1.893 sum -17.283 2.179 8.658 19.453 Atomic orbital electron populations 1.21851 0.91925 1.04024 1.05269 1.20836 0.90525 0.83694 0.75549 1.90745 1.70672 1.31406 1.49347 1.46381 1.07236 1.08856 1.75301 1.21939 0.78745 0.98266 0.96641 0.87879 1.23612 0.89822 1.00917 0.96096 1.64513 1.20966 1.26771 1.09065 1.22096 0.96341 0.99650 0.91316 1.19704 0.87501 0.84321 0.85631 1.90506 1.65741 1.63558 1.26341 1.41861 1.19742 1.48393 1.10116 1.19695 0.95715 1.29858 0.97486 0.87907 1.25257 0.99911 0.98050 0.94738 1.69609 1.39632 1.44768 1.00378 0.85864 0.81407 0.79375 0.77689 1.20460 1.20930 1.19382 1.23008 0.97463 0.92059 0.94623 1.21756 0.95915 0.93867 0.97050 1.21926 0.98221 0.98836 1.01428 1.21826 1.01052 1.02611 0.93621 0.90771 0.88828 0.88759 0.76156 0.89664 0.93860 0.93540 0.89089 0.77514 0.91889 0.93848 0.88012 0.91441 0.92391 0.92433 0.91665 0.92995 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.39 36.00 0.37 -0.68 16 2 C 0.51 5.46 7.94 -10.99 -0.09 5.37 16 3 O -0.54 -8.50 16.83 5.56 0.09 -8.40 16 4 N -0.72 -6.98 5.00 -51.91 -0.26 -7.24 16 5 C 0.15 1.87 2.77 -65.97 -0.18 1.68 16 6 H 0.10 1.50 7.43 -51.93 -0.39 1.12 16 7 C 0.02 0.35 6.23 -1.90 -0.01 0.34 16 8 N -0.49 -8.46 5.12 -231.89 -1.19 -9.64 16 9 C 0.04 0.70 5.30 -4.98 -0.03 0.67 16 10 C 0.44 10.53 7.39 -10.99 -0.08 10.45 16 11 O -0.58 -15.51 14.10 5.54 0.08 -15.43 16 12 N -0.56 -14.37 5.29 -10.97 -0.06 -14.43 16 13 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 14 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 17 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.06 0.91 4.71 -2.76 -0.01 0.90 16 22 C -0.08 -1.01 0.95 -153.05 -0.15 -1.15 16 23 C -0.15 -1.34 7.02 37.16 0.26 -1.08 16 24 C -0.13 -1.49 8.24 37.15 0.31 -1.19 16 25 H 0.07 0.27 7.91 -51.93 -0.41 -0.14 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.54 8.14 -51.92 -0.42 0.11 16 28 H 0.40 2.81 5.65 -40.82 -0.23 2.58 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.04 0.57 7.95 -51.93 -0.41 0.16 16 31 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 32 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 33 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.04 0.73 7.25 -51.93 -0.38 0.35 16 36 H 0.10 1.94 6.57 -51.93 -0.34 1.60 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.40 6.90 -51.93 -0.36 0.04 16 39 H 0.06 0.52 8.01 -51.93 -0.42 0.10 16 40 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -33.21 340.56 -6.91 -40.12 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.56 Total: 10.38 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 0.15 Total: 7.35 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.78 Total: -55.22 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.21 -6.91 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675425982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.588 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds