Wall clock time and date at job start Tue Mar 31 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21279 * 120.00204 * 2 1 4 4 N 1.34770 * 119.99773 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99870 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47050 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00245 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00198 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00161 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47220 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.49048 * 305.06143 * 10 9 8 12 12 C 1.53036 * 109.50129 * 184.99989 * 10 9 8 13 13 C 1.53035 * 109.54123 * 178.67801 * 12 10 9 14 14 C 1.53194 * 109.31116 * 61.36709 * 13 12 10 15 15 N 1.46931 * 108.77286 * 305.36582 * 14 13 12 16 16 C 1.36937 * 120.62783 * 233.60972 * 15 14 13 17 17 H 1.08003 * 120.00037 * 151.82871 * 16 15 14 18 18 C 1.38811 * 120.00168 * 331.82473 * 16 15 14 19 19 N 1.31622 * 120.00017 * 343.08298 * 18 16 15 20 20 Si 1.86801 * 120.00107 * 163.07481 * 18 16 15 21 21 H 1.48506 * 109.47001 * 90.00505 * 20 18 16 22 22 H 1.48501 * 109.47147 * 210.00133 * 20 18 16 23 23 H 1.48501 * 109.47298 * 330.00528 * 20 18 16 24 24 C 1.46919 * 118.73997 * 53.60965 * 15 14 13 25 25 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47457 * 300.00537 * 1 2 3 27 27 H 1.09007 * 109.47101 * 59.99955 * 1 2 3 28 28 H 0.97001 * 120.00141 * 359.97438 * 4 2 1 29 29 H 1.08998 * 109.46990 * 59.99415 * 5 4 2 30 30 H 1.09000 * 109.47244 * 299.99330 * 5 4 2 31 31 H 0.96998 * 119.99813 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47406 * 60.00207 * 9 8 6 33 33 H 1.09003 * 109.47577 * 299.99884 * 9 8 6 34 34 H 1.09006 * 109.45931 * 298.70592 * 12 10 9 35 35 H 1.09005 * 109.45998 * 58.67055 * 12 10 9 36 36 H 1.09005 * 109.49636 * 181.31719 * 13 12 10 37 37 H 1.08998 * 109.49723 * 301.41767 * 13 12 10 38 38 H 1.08999 * 109.58471 * 65.15065 * 14 13 12 39 39 H 1.09002 * 109.58809 * 185.57951 * 14 13 12 40 40 H 0.97004 * 120.00103 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.59059 * 186.60786 * 24 15 14 42 42 H 1.08997 * 109.59071 * 66.17797 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 6 4.1481 -2.5880 -0.0010 7 8 3.3600 -3.5098 -0.0009 8 7 5.4732 -2.8344 -0.0019 9 6 5.9614 -4.2155 -0.0024 10 6 7.4915 -4.2156 -0.0029 11 1 7.8550 -3.6252 -0.8439 12 6 8.0023 -5.6527 -0.1291 13 6 9.5322 -5.6511 -0.1628 14 6 10.0672 -5.0610 1.1459 15 7 9.4665 -3.7353 1.3472 16 6 10.2556 -2.6381 1.5676 17 1 9.9120 -1.6577 1.2723 18 6 11.4972 -2.7858 2.1705 19 7 11.7835 -3.8912 2.8252 20 14 12.7618 -1.4160 2.0526 21 1 12.5928 -0.4864 3.1983 22 1 14.1273 -1.9988 2.0853 23 1 12.5705 -0.6739 0.7806 24 6 8.0033 -3.6093 1.3076 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.6958 -2.0072 -0.0005 29 1 4.0095 -0.6535 0.8888 30 1 4.0088 -0.6533 -0.8911 31 1 6.1035 -2.0971 -0.0024 32 1 5.5975 -4.7293 -0.8921 33 1 5.5988 -4.7295 0.8878 34 1 7.6584 -6.2366 0.7248 35 1 7.6194 -6.0947 -1.0490 36 1 9.8947 -6.6728 -0.2762 37 1 9.8770 -5.0469 -1.0020 38 1 9.7997 -5.7134 1.9771 39 1 11.1515 -4.9659 1.0875 40 1 12.6512 -3.9946 3.2463 41 1 7.7257 -2.5563 1.3558 42 1 7.5675 -4.1432 2.1520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690371684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:12 Heat of formation + Delta-G solvation = -91.865020 kcal Electronic energy + Delta-G solvation = -22247.875714 eV Core-core repulsion = 18840.799027 eV Total energy + Delta-G solvation = -3407.076687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26670 -40.24915 -39.31505 -36.37733 -35.48138 -34.70381 -32.31995 -32.18626 -31.20444 -28.46263 -27.23264 -26.12856 -23.82656 -22.58535 -21.69241 -21.63419 -20.61882 -18.84882 -18.50736 -17.67298 -17.12085 -17.08822 -16.78270 -16.27444 -16.20707 -15.76240 -15.47540 -15.04450 -14.79505 -14.52166 -14.14821 -14.13402 -14.00907 -13.74598 -13.41851 -13.29046 -13.00807 -12.90425 -12.87570 -12.49758 -12.27410 -11.98064 -11.81621 -11.57441 -11.39667 -11.13130 -11.09254 -10.97749 -10.53188 -10.30904 -10.09519 -8.67004 -7.86996 -5.32668 1.45136 1.46827 1.48721 1.57781 1.60529 1.81535 2.50232 2.51374 3.28237 3.56269 3.63281 3.95639 3.99515 4.01980 4.07980 4.28618 4.36162 4.41942 4.53281 4.58046 4.61955 4.68632 4.77419 4.89079 4.91329 5.01106 5.06422 5.11716 5.21488 5.27259 5.33953 5.37417 5.46258 5.57825 5.67481 5.79168 6.38600 6.42024 6.48782 7.05914 7.15432 7.17439 7.87121 8.38600 9.19219 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.003379 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.730450 B = 8284.842147 C = 9474.338815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.598 6.598 4 N -0.714 5.714 5 C 0.098 3.902 6 C 0.514 3.486 7 O -0.572 6.572 8 N -0.713 5.713 9 C 0.138 3.862 10 C -0.102 4.102 11 H 0.077 0.923 12 C -0.097 4.097 13 C -0.131 4.131 14 C 0.172 3.828 15 N -0.610 5.610 16 C -0.261 4.261 17 H 0.071 0.929 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.965 3.035 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.268 1.268 24 C 0.151 3.849 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.418 0.582 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.414 0.586 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.053 0.947 38 H -0.008 1.008 39 H 0.050 0.950 40 H 0.249 0.751 41 H 0.057 0.943 42 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.876 1.437 -8.585 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.297 3.703 3 O -0.479 6.479 4 N -0.370 5.370 5 C -0.030 4.030 6 C 0.300 3.700 7 O -0.453 6.453 8 N -0.364 5.364 9 C 0.014 3.986 10 C -0.122 4.122 11 H 0.096 0.904 12 C -0.135 4.135 13 C -0.170 4.170 14 C 0.046 3.954 15 N -0.333 5.333 16 C -0.391 4.391 17 H 0.088 0.912 18 C -0.248 4.248 19 N -0.583 5.583 20 Si 0.793 3.207 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.193 1.193 24 C 0.025 3.975 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.257 0.743 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.251 0.749 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.010 0.990 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -18.845 1.466 -8.498 20.725 hybrid contribution 1.383 0.406 0.536 1.538 sum -17.462 1.872 -7.962 19.282 Atomic orbital electron populations 1.21871 0.87710 1.06299 1.06279 1.21620 0.92430 0.82222 0.74077 1.90722 1.72011 1.32953 1.52203 1.45933 1.05942 1.10228 1.74876 1.21089 0.82850 0.93282 1.05743 1.20645 0.82661 0.91212 0.75470 1.90670 1.55869 1.46921 1.51797 1.45940 1.06726 1.10053 1.73696 1.21309 0.92882 0.82219 1.02163 1.21732 0.92873 0.98272 0.99314 0.90416 1.21335 0.94958 0.95113 1.02078 1.22000 0.96390 1.00166 0.98395 1.20637 0.97473 0.84712 0.92541 1.44308 1.00975 1.04953 1.83059 1.19534 0.99005 0.88672 1.31909 0.91156 1.25803 1.01910 0.99527 0.97531 1.70196 1.22212 1.29020 1.36852 0.85318 0.78339 0.78887 0.78142 1.21299 1.22163 1.19283 1.21048 0.83756 0.98455 0.94198 0.88079 0.87698 0.87537 0.74311 0.87839 0.87288 0.74931 0.90480 0.92169 0.92622 0.90029 0.91312 0.92842 0.98968 0.93162 0.94221 0.92421 0.97600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.39 71.24 0.74 -0.81 16 2 C 0.51 9.71 7.94 87.66 0.70 10.41 16 3 O -0.60 -16.98 17.10 -3.03 -0.05 -17.03 16 4 N -0.71 -12.72 5.53 -466.80 -2.58 -15.30 16 5 C 0.10 1.83 6.15 85.63 0.53 2.35 16 6 C 0.51 11.35 7.90 87.66 0.69 12.04 16 7 O -0.57 -15.73 15.67 -3.03 -0.05 -15.78 16 8 N -0.71 -15.31 5.33 -463.06 -2.47 -17.78 16 9 C 0.14 3.33 5.07 86.38 0.44 3.77 16 10 C -0.10 -2.91 2.37 -10.72 -0.03 -2.94 16 11 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 12 C -0.10 -2.78 5.17 30.62 0.16 -2.63 16 13 C -0.13 -4.58 6.08 30.67 0.19 -4.39 16 14 C 0.17 8.11 5.30 86.36 0.46 8.57 16 15 N -0.61 -29.40 2.99 -699.10 -2.09 -31.49 16 16 C -0.26 -13.90 9.58 84.03 0.81 -13.10 16 17 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 18 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 19 N -0.94 -55.19 11.20 21.65 0.24 -54.95 16 20 Si 0.96 44.22 29.59 68.60 2.03 46.24 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.15 5.71 5.60 86.36 0.48 6.20 16 25 H 0.10 0.49 7.91 -2.39 -0.02 0.47 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.42 6.60 7.27 -92.71 -0.67 5.92 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.41 7.87 7.71 -92.71 -0.71 7.16 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.05 2.71 6.06 -2.39 -0.01 2.70 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.06 2.06 7.14 -2.39 -0.02 2.04 16 42 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -72.01 343.34 0.24 -71.77 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -0.36 Total: 17.31 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 5.58 Total: 17.01 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -6.90 Total: -119.52 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.10 Total: -32.81 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -72.01 0.24 -71.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690371684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.100 kcal (2) G-P(sol) polarization free energy of solvation -72.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds