Wall clock time and date at job start Tue Mar 31 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46958 * 2 1 4 4 C 1.52998 * 109.47122 * 119.99911 * 2 1 3 5 5 N 1.46503 * 109.47409 * 295.00214 * 4 2 1 6 6 C 1.36936 * 119.99979 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00121 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99846 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99798 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00157 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47213 * 89.99607 * 10 8 6 12 12 H 1.48503 * 109.47336 * 209.99931 * 10 8 6 13 13 H 1.48501 * 109.47207 * 329.99967 * 10 8 6 14 14 C 1.53003 * 109.47521 * 240.00157 * 2 1 3 15 15 N 1.46502 * 109.47019 * 64.99771 * 14 2 1 16 16 C 1.34772 * 120.00082 * 179.97438 * 15 14 2 17 17 O 1.21280 * 119.99903 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99964 * 179.97438 * 16 15 14 19 19 C 1.52997 * 110.43672 * 300.70362 * 18 16 15 20 20 C 1.54632 * 110.59439 * 178.08422 * 18 16 15 21 21 C 1.54478 * 101.76469 * 266.06535 * 20 18 16 22 22 N 1.46759 * 105.47318 * 334.58566 * 21 20 18 23 23 C 1.34420 * 111.30341 * 17.02075 * 22 21 20 24 24 O 1.21276 * 124.94039 * 179.62983 * 23 22 21 25 25 H 1.09002 * 109.47356 * 300.00133 * 1 2 3 26 26 H 1.08999 * 109.46919 * 59.99918 * 1 2 3 27 27 H 1.08995 * 109.46818 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46624 * 55.00370 * 4 2 1 29 29 H 1.09002 * 109.47349 * 174.99799 * 4 2 1 30 30 H 0.97001 * 119.99530 * 359.97438 * 5 4 2 31 31 H 0.97001 * 119.99841 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46995 * 305.00515 * 14 2 1 33 33 H 1.08994 * 109.47325 * 184.99624 * 14 2 1 34 34 H 0.97006 * 119.99775 * 0.02562 * 15 14 2 35 35 H 1.09002 * 109.47153 * 181.08678 * 19 18 16 36 36 H 1.09001 * 109.46832 * 61.08869 * 19 18 16 37 37 H 1.09004 * 109.47261 * 301.08850 * 19 18 16 38 38 H 1.08997 * 110.97420 * 24.18912 * 20 18 16 39 39 H 1.09010 * 110.96625 * 147.94806 * 20 18 16 40 40 H 1.08999 * 110.24668 * 215.58797 * 21 20 18 41 41 H 1.08992 * 110.31883 * 93.62821 * 21 20 18 42 42 H 0.97006 * 124.34989 * 196.98904 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 0.0353 2.4424 6 6 2.0019 -0.4203 3.6855 7 1 2.5630 -1.3376 3.7864 8 6 1.6342 0.2963 4.8161 9 7 0.9500 1.4139 4.6931 10 14 2.1104 -0.3256 6.5119 11 1 3.4326 0.2340 6.8911 12 1 1.0892 0.1032 7.5012 13 1 2.1879 -1.8084 6.4917 14 6 2.0401 -0.7212 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9966 -0.4129 -3.6659 17 8 2.6266 -1.4430 -3.7792 18 6 1.5973 0.3651 -4.8933 19 6 0.0753 0.5021 -4.9674 20 6 2.1423 -0.3159 -6.1701 21 6 3.4754 0.4349 -6.3831 22 7 3.2966 1.7410 -5.7381 23 6 2.2523 1.7288 -4.8918 24 8 1.8877 2.6738 -4.2249 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6053 -1.7198 1.2950 29 1 3.1263 -0.7995 1.2056 30 1 1.1488 0.8594 2.3517 31 1 0.6928 1.9145 5.4832 32 1 1.6054 -1.7198 -1.2952 33 1 3.1264 -0.7993 -1.2056 34 1 1.1489 0.8595 -2.3517 35 1 -0.1967 1.0498 -5.8696 36 1 -0.2838 1.0429 -4.0918 37 1 -0.3778 -0.4890 -4.9934 38 1 2.3158 -1.3787 -6.0017 39 1 1.4684 -0.1610 -7.0128 40 1 3.6700 0.5636 -7.4478 41 1 4.2951 -0.1086 -5.9134 42 1 3.8599 2.5137 -5.9011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698768105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:13 Heat of formation + Delta-G solvation = -99.638592 kcal Electronic energy + Delta-G solvation = -22618.194999 eV Core-core repulsion = 19210.781225 eV Total energy + Delta-G solvation = -3407.413774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.29443 -40.10919 -38.34784 -37.39331 -35.98782 -34.55423 -33.78036 -31.87056 -29.74540 -27.86308 -27.24875 -26.36716 -24.59906 -23.12979 -22.59037 -21.54311 -20.40389 -19.19312 -18.57667 -18.33603 -17.33341 -16.77854 -16.58169 -16.15764 -16.06719 -15.54380 -15.39704 -15.13887 -14.90884 -14.71955 -14.56298 -14.13953 -13.78490 -13.59686 -13.49233 -13.37863 -13.20688 -12.96439 -12.81314 -12.35297 -12.19771 -12.17928 -12.14429 -12.02366 -11.74831 -11.68224 -11.16488 -10.95461 -10.83520 -10.18572 -10.15490 -9.00996 -7.96014 -5.24998 1.14264 1.46933 1.48903 1.51503 1.57455 2.08731 2.35576 2.56152 3.14490 3.34932 3.37561 3.58051 3.68027 3.88127 3.92127 4.04401 4.08204 4.32006 4.39045 4.50282 4.66578 4.67146 4.68440 4.73769 4.76558 4.90423 5.00284 5.01515 5.09016 5.10554 5.14713 5.27630 5.35562 5.43592 5.48749 5.69489 5.89590 6.26104 6.37044 7.01784 7.10434 7.32730 8.07735 8.31806 9.27618 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.034268 B = 0.003004 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.894448 B = 9319.462537 C = 9455.205548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 H 0.068 0.932 4 C 0.159 3.841 5 N -0.743 5.743 6 C -0.248 4.248 7 H 0.075 0.925 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.269 1.269 14 C 0.138 3.862 15 N -0.713 5.713 16 C 0.530 3.470 17 O -0.559 6.559 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.113 4.113 21 C 0.096 3.904 22 N -0.718 5.718 23 C 0.522 3.478 24 O -0.559 6.559 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.027 0.973 29 H 0.019 0.981 30 H 0.375 0.625 31 H 0.252 0.748 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 -2.802 -28.590 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 H 0.086 0.914 4 C 0.032 3.968 5 N -0.386 5.386 6 C -0.379 4.379 7 H 0.093 0.907 8 C -0.268 4.268 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.194 1.194 14 C 0.014 3.986 15 N -0.364 5.364 16 C 0.315 3.685 17 O -0.438 6.438 18 C -0.125 4.125 19 C -0.187 4.187 20 C -0.150 4.150 21 C -0.027 4.027 22 N -0.373 5.373 23 C 0.307 3.693 24 O -0.437 6.437 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.208 0.792 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 1.416 -3.287 -28.183 28.410 hybrid contribution 0.190 0.983 1.399 1.720 sum 1.607 -2.304 -26.785 26.931 Atomic orbital electron populations 1.21709 0.93738 1.02204 1.01518 1.21346 0.97375 0.99703 0.93195 0.91377 1.20710 0.96492 0.94221 0.85381 1.42533 1.66810 1.27818 1.01433 1.19650 1.27890 1.05417 0.84980 0.90663 1.25584 1.01637 0.97886 1.01670 1.69821 1.45033 1.17980 1.29168 0.85115 0.76925 0.78030 0.79536 1.21438 1.22059 1.19376 1.21210 0.99606 0.95229 0.82566 1.46043 1.56964 1.27849 1.05525 1.20170 0.78734 0.85124 0.84490 1.90681 1.40943 1.25465 1.86710 1.21693 1.00750 0.94047 0.95986 1.21744 0.88374 1.04207 1.04343 1.22800 0.96437 1.01523 0.94263 1.22355 0.98198 0.81840 1.00344 1.46225 1.31201 1.15843 1.44011 1.20627 0.81054 0.88795 0.78857 1.90770 1.67180 1.40855 1.44883 0.93897 0.91185 0.92218 0.95533 0.96277 0.79222 0.93955 0.90623 0.92046 0.75359 0.89164 0.91954 0.89559 0.87865 0.86107 0.86084 0.91130 0.73886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 8.94 71.98 0.64 -3.45 16 2 C -0.10 -3.14 2.46 -10.79 -0.03 -3.17 16 3 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 4 C 0.16 6.48 5.65 86.38 0.49 6.97 16 5 N -0.74 -38.57 5.33 -343.44 -1.83 -40.40 16 6 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 7 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 8 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 9 N -0.97 -60.23 13.06 21.65 0.28 -59.94 16 10 Si 0.98 46.86 29.55 68.60 2.03 48.88 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 14 C 0.14 3.87 5.07 86.38 0.44 4.31 16 15 N -0.71 -17.89 5.15 -463.06 -2.38 -20.27 16 16 C 0.53 12.84 6.55 87.66 0.57 13.41 16 17 O -0.56 -16.27 15.47 -3.03 -0.05 -16.32 16 18 C -0.12 -2.05 0.75 -52.93 -0.04 -2.09 16 19 C -0.13 -1.77 8.30 71.98 0.60 -1.18 16 20 C -0.11 -1.21 6.04 31.65 0.19 -1.02 16 21 C 0.10 0.90 7.78 86.83 0.68 1.57 16 22 N -0.72 -10.18 6.24 -459.83 -2.87 -13.04 16 23 C 0.52 10.93 7.13 87.90 0.63 11.56 16 24 O -0.56 -16.02 17.83 -3.02 -0.05 -16.08 16 25 H 0.04 1.56 7.18 -2.39 -0.02 1.54 16 26 H 0.07 1.74 7.18 -2.39 -0.02 1.72 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.38 20.60 6.85 -92.71 -0.64 19.96 16 31 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.41 9.92 7.08 -92.70 -0.66 9.26 16 35 H 0.09 0.92 8.13 -2.39 -0.02 0.90 16 36 H 0.06 1.01 7.64 -2.39 -0.02 0.99 16 37 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.10 1.34 6.94 -2.39 -0.02 1.32 16 39 H 0.12 0.59 7.90 -2.38 -0.02 0.57 16 40 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.42 4.68 8.96 -92.70 -0.83 3.85 16 Total: -1.00 -74.51 345.40 -0.48 -74.98 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -1.08 Total: 32.55 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 5.47 Total: 9.64 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -6.80 Total: -133.66 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.10 Total: -32.39 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -74.51 -0.48 -74.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698768105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.655 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds