Wall clock time and date at job start Tue Mar 31 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 15 15 N 1.46497 * 109.47391 * 64.99897 * 14 2 1 16 16 C 1.34774 * 120.00109 * 179.97438 * 15 14 2 17 17 O 1.21349 * 120.00191 * 0.02562 * 16 15 14 18 18 C 1.49457 * 119.99703 * 180.02562 * 16 15 14 19 19 O 1.21349 * 120.00106 * 359.97438 * 18 16 15 20 20 N 1.34774 * 119.99703 * 179.97438 * 18 16 15 21 21 C 1.46497 * 120.00109 * 179.97438 * 20 18 16 22 22 C 1.53001 * 109.47391 * 180.02562 * 21 20 18 23 23 C 1.53002 * 117.49627 * 243.62564 * 22 21 20 24 24 C 1.53005 * 117.50012 * 175.00249 * 22 21 20 25 25 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 27 27 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 28 28 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 29 29 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 30 30 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 31 31 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47203 * 185.00287 * 14 2 1 33 33 H 1.08997 * 109.47065 * 304.99977 * 14 2 1 34 34 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 35 35 H 0.97005 * 120.00431 * 0.02562 * 20 18 16 36 36 H 1.09001 * 109.47266 * 300.00551 * 21 20 18 37 37 H 1.08997 * 109.46950 * 60.00209 * 21 20 18 38 38 H 1.08993 * 115.54868 * 29.33009 * 22 21 20 39 39 H 1.08996 * 117.50214 * 359.97438 * 23 22 21 40 40 H 1.08998 * 117.50104 * 145.02264 * 23 22 21 41 41 H 1.08994 * 117.49818 * 214.97757 * 24 22 21 42 42 H 1.09005 * 117.49720 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5628 -1.3378 3.7864 8 6 1.6395 0.2994 4.8157 9 7 0.9605 1.4201 4.6925 10 14 2.1168 -0.3218 6.5115 11 1 3.4421 0.2329 6.8870 12 1 1.0996 0.1127 7.5023 13 1 2.1881 -1.8050 6.4933 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6268 -1.4438 -3.7793 18 6 1.6015 0.3591 -4.8831 19 8 0.9708 1.3896 -4.7697 20 7 1.9460 -0.0890 -6.1065 21 6 1.5584 0.6676 -7.2997 22 6 2.0690 -0.0533 -8.5489 23 6 3.1031 0.6736 -9.4109 24 6 1.6648 0.5185 -9.9093 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1262 -0.7996 1.2055 29 1 1.6054 -1.7199 1.2951 30 1 1.1482 0.8590 2.3517 31 1 0.7075 1.9234 5.4823 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 1.1489 0.8595 -2.3517 35 1 2.4499 -0.9129 -6.1972 36 1 0.4721 0.7451 -7.3438 37 1 1.9923 1.6664 -7.2533 38 1 2.1561 -1.1365 -8.4640 39 1 3.4194 1.6655 -9.0884 40 1 3.8709 0.0687 -9.8933 41 1 1.4864 -0.1885 -10.7195 42 1 1.0349 1.4080 -9.9143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698772529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:47 Heat of formation + Delta-G solvation = -45.313018 kcal Electronic energy + Delta-G solvation = -21304.380998 eV Core-core repulsion = 17899.322957 eV Total energy + Delta-G solvation = -3405.058041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.79830 -38.96520 -37.89247 -36.94041 -34.92539 -34.16868 -32.48033 -30.09160 -28.34877 -26.74299 -25.58793 -23.67539 -22.89938 -22.18430 -21.53235 -20.56811 -19.90820 -18.56413 -17.18738 -17.03800 -16.44968 -16.19029 -15.69338 -15.29929 -14.82330 -14.69246 -14.38124 -14.21887 -13.87960 -13.64356 -13.34517 -13.04907 -12.63933 -12.34059 -12.08397 -12.04830 -11.98319 -11.83712 -11.07553 -11.01535 -10.92487 -10.75500 -10.73831 -10.58399 -10.42118 -10.06114 -9.78256 -9.64389 -9.54823 -9.23908 -8.87697 -6.92388 -5.76631 -3.05294 1.26573 2.15439 3.06028 3.19707 3.44298 3.48915 3.50809 3.51858 4.08439 4.29856 4.36889 4.46366 4.59041 4.68327 4.97381 5.08740 5.14780 5.16626 5.21835 5.36159 5.37754 5.57506 5.58829 5.59556 5.75490 5.88189 5.90182 5.92406 6.06480 6.18333 6.30516 6.39442 6.64596 6.74722 6.76755 6.84944 7.20978 7.56101 7.70508 7.85412 8.42273 9.53561 10.10746 10.45432 11.46267 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.059239 B = 0.002190 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.548882 B =12781.153303 C =13006.983089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 H 0.079 0.921 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.124 3.876 15 N -0.691 5.691 16 C 0.504 3.496 17 O -0.525 6.525 18 C 0.508 3.492 19 O -0.519 6.519 20 N -0.700 5.700 21 C 0.148 3.852 22 C -0.174 4.174 23 C -0.176 4.176 24 C -0.169 4.169 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.021 0.979 29 H 0.023 0.977 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.413 0.587 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 -2.224 -28.432 28.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 H 0.097 0.903 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.000 4.000 15 N -0.343 5.343 16 C 0.284 3.716 17 O -0.402 6.402 18 C 0.288 3.712 19 O -0.394 6.394 20 N -0.354 5.354 21 C 0.025 3.975 22 C -0.193 4.193 23 C -0.213 4.213 24 C -0.206 4.206 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.250 0.750 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.282 -2.319 -28.273 28.397 hybrid contribution 0.101 -0.029 0.929 0.935 sum 1.383 -2.348 -27.344 27.480 Atomic orbital electron populations 1.21816 0.94484 1.02027 1.01790 1.21581 0.96929 1.00677 0.93908 0.90254 1.20568 0.96624 0.94209 0.85304 1.42336 1.66910 1.27736 1.00554 1.19234 1.28807 1.05381 0.83651 0.91133 1.24745 1.01051 0.97362 0.97887 1.69657 1.43724 1.16326 1.28525 0.86172 0.77582 0.77991 0.84341 1.21740 1.21783 1.20761 1.21606 1.00593 0.95376 0.82379 1.45897 1.55350 1.27946 1.05128 1.19988 0.81160 0.85701 0.84772 1.90764 1.39099 1.23701 1.86613 1.20257 0.80500 0.85592 0.84841 1.90781 1.38441 1.23549 1.86659 1.45728 1.56623 1.28200 1.04897 1.21012 1.00409 0.94674 0.81366 1.22457 1.05376 0.99885 0.91535 1.23120 0.92645 1.02151 1.03376 1.22972 0.98288 1.03341 0.96024 0.92737 0.90966 0.93715 0.96071 0.95916 0.78152 0.93513 0.90656 0.90657 0.74996 0.74965 0.90429 0.90674 0.86857 0.88361 0.88429 0.88282 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.94 37.16 0.33 -1.82 16 2 C -0.11 -1.72 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 5 N -0.73 -18.26 5.33 -59.91 -0.32 -18.58 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 10 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.12 1.65 5.06 -4.04 -0.02 1.63 16 15 N -0.69 -8.57 5.28 -60.73 -0.32 -8.89 16 16 C 0.50 6.43 7.89 -11.58 -0.09 6.34 16 17 O -0.53 -7.65 16.48 5.50 0.09 -7.56 16 18 C 0.51 5.91 7.89 -11.58 -0.09 5.82 16 19 O -0.52 -7.13 16.48 5.50 0.09 -7.04 16 20 N -0.70 -6.14 5.55 -60.73 -0.34 -6.48 16 21 C 0.15 1.06 5.96 -4.04 -0.02 1.04 16 22 C -0.17 -0.92 5.85 -90.62 -0.53 -1.45 16 23 C -0.18 -0.84 10.18 -26.73 -0.27 -1.11 16 24 C -0.17 -0.75 10.25 -26.73 -0.27 -1.02 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.26 7.18 -51.93 -0.37 0.89 16 27 H 0.04 0.57 7.18 -51.93 -0.37 0.20 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.38 10.03 6.85 -40.82 -0.28 9.75 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.41 4.83 7.13 -40.82 -0.29 4.54 16 35 H 0.41 3.15 7.87 -40.82 -0.32 2.83 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 38 H 0.11 0.53 8.04 -51.93 -0.42 0.12 16 39 H 0.10 0.47 8.03 -51.93 -0.42 0.05 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -32.47 356.37 -7.84 -40.31 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.65 Total: 9.64 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.46 Total: 3.25 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.25 Total: -61.41 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.18 Total: -14.60 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.47 -7.84 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698772529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.002 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds