Wall clock time and date at job start Tue Mar 31 2020 02:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 15 15 N 1.46497 * 109.47391 * 64.99897 * 14 2 1 16 16 C 1.34774 * 120.00109 * 179.97438 * 15 14 2 17 17 O 1.21349 * 120.00191 * 0.02562 * 16 15 14 18 18 C 1.49457 * 119.99703 * 180.02562 * 16 15 14 19 19 O 1.21349 * 120.00106 * 359.97438 * 18 16 15 20 20 N 1.34774 * 119.99703 * 179.97438 * 18 16 15 21 21 C 1.46497 * 120.00109 * 179.97438 * 20 18 16 22 22 C 1.53001 * 109.47391 * 180.02562 * 21 20 18 23 23 C 1.53002 * 117.49627 * 243.62564 * 22 21 20 24 24 C 1.53005 * 117.50012 * 175.00249 * 22 21 20 25 25 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 27 27 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 28 28 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 29 29 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 30 30 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 31 31 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47203 * 185.00287 * 14 2 1 33 33 H 1.08997 * 109.47065 * 304.99977 * 14 2 1 34 34 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 35 35 H 0.97005 * 120.00431 * 0.02562 * 20 18 16 36 36 H 1.09001 * 109.47266 * 300.00551 * 21 20 18 37 37 H 1.08997 * 109.46950 * 60.00209 * 21 20 18 38 38 H 1.08993 * 115.54868 * 29.33009 * 22 21 20 39 39 H 1.08996 * 117.50214 * 359.97438 * 23 22 21 40 40 H 1.08998 * 117.50104 * 145.02264 * 23 22 21 41 41 H 1.08994 * 117.49818 * 214.97757 * 24 22 21 42 42 H 1.09005 * 117.49720 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5628 -1.3378 3.7864 8 6 1.6395 0.2994 4.8157 9 7 0.9605 1.4201 4.6925 10 14 2.1168 -0.3218 6.5115 11 1 3.4421 0.2329 6.8870 12 1 1.0996 0.1127 7.5023 13 1 2.1881 -1.8050 6.4933 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6268 -1.4438 -3.7793 18 6 1.6015 0.3591 -4.8831 19 8 0.9708 1.3896 -4.7697 20 7 1.9460 -0.0890 -6.1065 21 6 1.5584 0.6676 -7.2997 22 6 2.0690 -0.0533 -8.5489 23 6 3.1031 0.6736 -9.4109 24 6 1.6648 0.5185 -9.9093 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1262 -0.7996 1.2055 29 1 1.6054 -1.7199 1.2951 30 1 1.1482 0.8590 2.3517 31 1 0.7075 1.9234 5.4823 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 1.1489 0.8595 -2.3517 35 1 2.4499 -0.9129 -6.1972 36 1 0.4721 0.7451 -7.3438 37 1 1.9923 1.6664 -7.2533 38 1 2.1561 -1.1365 -8.4640 39 1 3.4194 1.6655 -9.0884 40 1 3.8709 0.0687 -9.8933 41 1 1.4864 -0.1885 -10.7195 42 1 1.0349 1.4080 -9.9143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698772529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:46 Heat of formation + Delta-G solvation = -68.963727 kcal Electronic energy + Delta-G solvation = -21305.406570 eV Core-core repulsion = 17899.322957 eV Total energy + Delta-G solvation = -3406.083612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75908 -39.88779 -38.45058 -38.28329 -36.19396 -35.27476 -34.07221 -31.92427 -29.13149 -27.85643 -27.23751 -25.05999 -23.69047 -23.22776 -22.08168 -21.66066 -21.04412 -19.63489 -18.93323 -18.08567 -17.27242 -17.10240 -16.87332 -16.33011 -16.25273 -15.68419 -15.45005 -15.39964 -15.01830 -14.83729 -14.61555 -14.25311 -14.01386 -13.61441 -13.58184 -12.96473 -12.86266 -12.80201 -12.43906 -12.36531 -12.21168 -12.16451 -12.01755 -11.71138 -11.66802 -11.41597 -11.20813 -10.93327 -10.73250 -10.33605 -10.23945 -8.98332 -7.94421 -5.22774 0.29739 1.25658 1.48513 1.49961 1.58455 2.09580 2.52116 2.59740 2.88919 3.39400 3.39815 3.63698 3.67348 3.94351 3.97015 4.05652 4.07384 4.23148 4.33619 4.52375 4.58599 4.66132 4.68239 4.70571 4.82102 4.92712 5.02279 5.03077 5.05474 5.10156 5.16273 5.26803 5.28724 5.36205 5.45111 5.51184 5.87409 6.27761 6.30226 6.67598 6.89204 7.34808 8.10678 8.33898 9.29069 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.059239 B = 0.002190 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.548882 B =12781.153303 C =13006.983089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.077 0.923 4 C 0.157 3.843 5 N -0.743 5.743 6 C -0.245 4.245 7 H 0.076 0.924 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.288 1.288 12 H -0.296 1.296 13 H -0.270 1.270 14 C 0.135 3.865 15 N -0.686 5.686 16 C 0.506 3.494 17 O -0.544 6.544 18 C 0.510 3.490 19 O -0.543 6.543 20 N -0.686 5.686 21 C 0.148 3.852 22 C -0.178 4.178 23 C -0.178 4.178 24 C -0.164 4.164 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.376 0.624 31 H 0.251 0.749 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.418 0.582 35 H 0.421 0.579 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 -3.129 -29.850 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.095 0.905 4 C 0.030 3.970 5 N -0.386 5.386 6 C -0.377 4.377 7 H 0.094 0.906 8 C -0.269 4.269 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.215 1.215 12 H -0.222 1.222 13 H -0.195 1.195 14 C 0.011 3.989 15 N -0.339 5.339 16 C 0.287 3.713 17 O -0.421 6.421 18 C 0.290 3.710 19 O -0.421 6.421 20 N -0.339 5.339 21 C 0.025 3.975 22 C -0.196 4.196 23 C -0.215 4.215 24 C -0.201 4.201 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.208 0.792 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.256 0.744 35 H 0.258 0.742 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.756 -3.263 -29.745 29.975 hybrid contribution -0.015 0.219 1.263 1.281 sum 1.741 -3.044 -28.482 28.698 Atomic orbital electron populations 1.21748 0.94073 1.02163 1.01573 1.21364 0.97090 1.00186 0.92991 0.90493 1.20728 0.96774 0.94179 0.85270 1.42531 1.66787 1.27875 1.01419 1.19648 1.27820 1.05252 0.85009 0.90609 1.25565 1.01813 0.97881 1.01604 1.69811 1.45376 1.17664 1.29106 0.85133 0.76899 0.77986 0.79698 1.21467 1.22212 1.19456 1.21388 1.00539 0.95212 0.81733 1.45808 1.55236 1.27978 1.04858 1.20167 0.80639 0.85430 0.85074 1.90757 1.39983 1.24519 1.86890 1.20043 0.80546 0.85213 0.85194 1.90776 1.39885 1.24518 1.86925 1.45755 1.55414 1.28190 1.04526 1.21117 1.00376 0.94619 0.81386 1.22410 1.06117 1.00127 0.90987 1.23186 0.93040 1.02105 1.03176 1.23063 0.98005 1.03514 0.95565 0.92414 0.93802 0.91248 0.95785 0.95599 0.79176 0.94023 0.90571 0.90240 0.74443 0.74162 0.90602 0.91014 0.86085 0.88578 0.87677 0.87256 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.94 71.98 0.64 -3.38 16 2 C -0.10 -2.89 2.46 -10.79 -0.03 -2.92 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 4 C 0.16 6.06 5.65 86.38 0.49 6.55 16 5 N -0.74 -37.28 5.33 -343.46 -1.83 -39.11 16 6 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 7 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 8 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 9 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 10 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.13 3.39 5.06 86.38 0.44 3.83 16 15 N -0.69 -15.99 5.28 -464.41 -2.45 -18.44 16 16 C 0.51 12.23 7.89 87.27 0.69 12.92 16 17 O -0.54 -15.05 16.48 -3.24 -0.05 -15.10 16 18 C 0.51 11.26 7.89 87.27 0.69 11.95 16 19 O -0.54 -14.41 16.48 -3.24 -0.05 -14.46 16 20 N -0.69 -11.10 5.55 -464.41 -2.58 -13.67 16 21 C 0.15 1.92 5.96 86.38 0.51 2.44 16 22 C -0.18 -1.57 5.85 -10.79 -0.06 -1.63 16 23 C -0.18 -1.40 10.18 30.60 0.31 -1.09 16 24 C -0.16 -1.16 10.25 30.60 0.31 -0.84 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.04 1.53 7.18 -2.39 -0.02 1.52 16 27 H 0.07 1.66 7.18 -2.38 -0.02 1.64 16 28 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.38 19.94 6.85 -92.70 -0.63 19.30 16 31 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.42 9.14 7.13 -92.70 -0.66 8.48 16 35 H 0.42 5.75 7.87 -92.70 -0.73 5.02 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.01 7.88 -2.39 -0.02 0.99 16 38 H 0.12 0.89 8.04 -2.39 -0.02 0.88 16 39 H 0.10 0.80 8.03 -2.39 -0.02 0.78 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -68.32 356.37 -0.34 -68.66 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.98 Total: 31.81 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 5.30 Total: 11.03 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -6.58 Total: -130.22 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.11 Total: -29.56 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -68.32 -0.34 -68.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698772529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.302 kcal (2) G-P(sol) polarization free energy of solvation -68.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds