Wall clock time and date at job start Tue Mar 31 2020 02:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46951 * 89.99797 * 10 8 6 12 12 H 1.48500 * 109.47313 * 210.00112 * 10 8 6 13 13 H 1.48501 * 109.46991 * 330.00153 * 10 8 6 14 14 N 1.46503 * 109.46834 * 119.99503 * 2 1 3 15 15 C 1.46500 * 119.99754 * 60.00682 * 14 2 1 16 16 C 1.34780 * 119.99889 * 239.99883 * 14 2 1 17 17 O 1.21276 * 120.00389 * 0.02562 * 16 14 2 18 18 C 1.50700 * 119.99528 * 179.97438 * 16 14 2 19 19 C 1.53001 * 109.47089 * 180.02562 * 18 16 14 20 20 H 1.09003 * 110.21646 * 306.93355 * 19 18 16 21 21 C 1.54480 * 110.24822 * 185.00624 * 19 18 16 22 22 C 1.54633 * 101.76155 * 215.58429 * 21 19 18 23 23 C 1.51276 * 104.19810 * 24.79310 * 22 21 19 24 24 O 1.21280 * 124.94459 * 163.74503 * 23 22 21 25 25 N 1.34424 * 110.11644 * 343.74973 * 23 22 21 26 26 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 27 27 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 29 29 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 30 30 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 31 31 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 32 32 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.47332 * 90.00087 * 15 14 2 34 34 H 1.09008 * 109.46640 * 209.99942 * 15 14 2 35 35 H 1.08994 * 109.47047 * 329.98940 * 15 14 2 36 36 H 1.09000 * 109.47800 * 300.00464 * 18 16 14 37 37 H 1.09006 * 109.47185 * 60.01006 * 18 16 14 38 38 H 1.08995 * 110.96951 * 333.69683 * 21 19 18 39 39 H 1.08995 * 110.97162 * 97.46371 * 21 19 18 40 40 H 1.08997 * 110.48700 * 143.47201 * 22 21 19 41 41 H 1.09003 * 110.48329 * 265.98315 * 22 21 19 42 42 H 0.97004 * 124.34682 * 179.57073 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.1840 -1.4388 -2.2065 7 1 3.6469 -1.8441 -3.0514 8 6 5.5672 -1.5389 -2.1506 9 7 6.2217 -1.0455 -1.1208 10 14 6.5001 -2.3738 -3.5370 11 1 6.8629 -1.3667 -4.5663 12 1 7.7353 -2.9972 -2.9975 13 1 5.6438 -3.4211 -4.1495 14 7 2.0182 -0.6905 1.1963 15 6 1.6644 -2.0931 1.4281 16 6 2.7931 -0.0354 2.0834 17 8 3.0858 1.1257 1.8917 18 6 3.2949 -0.7457 3.3142 19 6 4.1445 0.2161 4.1473 20 1 4.9250 0.6607 3.5298 21 6 4.7710 -0.5269 5.3480 22 6 4.7387 0.5627 6.4447 23 6 3.6152 1.4827 6.0207 24 8 3.0775 2.2992 6.7384 25 7 3.2994 1.2636 4.7326 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.7517 -0.1584 -2.1369 30 1 1.6054 -1.7198 -1.2950 31 1 3.9824 -0.4627 -0.4314 32 1 7.1884 -1.1157 -1.0814 33 1 2.4157 -2.7376 0.9719 34 1 1.6237 -2.2851 2.5004 35 1 0.6904 -2.3001 0.9848 36 1 2.4469 -1.0879 3.9075 37 1 3.9004 -1.6023 3.0180 38 1 4.1650 -1.3864 5.6342 39 1 5.7950 -0.8292 5.1285 40 1 4.5225 0.1194 7.4167 41 1 5.6855 1.1021 6.4746 42 1 2.6023 1.7367 4.2518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698849015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:57 Heat of formation + Delta-G solvation = -62.700209 kcal Electronic energy + Delta-G solvation = -23190.157882 eV Core-core repulsion = 19784.345876 eV Total energy + Delta-G solvation = -3405.812006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57605 -39.47107 -36.87610 -36.07740 -34.05894 -32.29444 -31.29543 -30.71450 -29.91754 -26.72069 -25.77486 -25.32650 -22.69157 -21.75137 -20.76346 -20.41130 -18.73629 -17.38743 -17.11718 -16.73354 -16.59289 -15.75197 -15.37118 -14.74491 -14.69711 -13.89502 -13.76085 -13.71036 -13.48792 -13.24460 -12.94368 -12.69843 -12.66773 -12.45933 -12.32262 -12.10010 -11.97478 -11.69174 -11.52305 -11.40700 -11.14345 -10.88320 -10.79396 -10.48229 -10.07868 -9.85394 -9.73390 -9.47499 -9.05669 -8.90442 -8.30115 -6.93532 -5.77504 -3.06539 2.61903 2.91913 3.25072 3.41080 3.42809 3.46371 3.47654 4.25369 4.35714 4.55279 4.59201 4.76245 5.04772 5.06937 5.15059 5.26315 5.31464 5.36678 5.49157 5.52372 5.56707 5.58670 5.62265 5.67818 5.77458 5.92505 6.04326 6.05817 6.08429 6.15005 6.33547 6.44179 6.69847 6.84336 6.94195 7.11221 7.66672 7.68544 8.29118 8.40528 8.47123 9.52231 10.10494 10.46251 11.44761 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.004656 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.261971 B = 6012.506997 C = 7108.048918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.012 4.012 9 N -0.930 5.930 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.596 5.596 15 C 0.078 3.922 16 C 0.516 3.484 17 O -0.541 6.541 18 C -0.149 4.149 19 C 0.145 3.855 20 H 0.097 0.903 21 C -0.129 4.129 22 C -0.156 4.156 23 C 0.516 3.484 24 O -0.548 6.548 25 N -0.714 5.714 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.027 0.973 30 H 0.020 0.980 31 H 0.386 0.614 32 H 0.254 0.746 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 -3.332 11.826 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.118 0.882 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.208 4.208 9 N -0.579 5.579 10 Si 0.737 3.263 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.329 5.329 15 C -0.065 4.065 16 C 0.304 3.696 17 O -0.418 6.418 18 C -0.189 4.189 19 C 0.039 3.961 20 H 0.115 0.885 21 C -0.167 4.167 22 C -0.196 4.196 23 C 0.302 3.698 24 O -0.426 6.426 25 N -0.370 5.370 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.220 0.780 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.997 -2.453 11.992 14.621 hybrid contribution 0.465 -0.394 -1.026 1.193 sum -7.532 -2.847 10.967 13.605 Atomic orbital electron populations 1.22062 0.95272 1.01986 1.02075 1.21388 0.93165 0.98545 0.84761 0.88199 1.20993 0.87123 0.96706 0.93616 1.42286 0.99672 1.70127 1.25122 1.19213 0.89462 1.29360 0.99163 0.91327 1.24724 0.96396 1.01663 0.98030 1.69676 1.07133 1.50880 1.30169 0.86218 0.79515 0.79003 0.81595 1.21743 1.21791 1.20835 1.47674 1.50502 1.12228 1.22448 1.21750 1.01561 0.82279 1.00902 1.20443 0.77874 0.87000 0.84299 1.90703 1.57226 1.17100 1.76816 1.22089 1.01461 1.00222 0.95133 1.21492 0.92850 0.87508 0.94227 0.88528 1.22717 1.02953 0.97594 0.93440 1.22342 0.99291 0.97325 1.00655 1.20894 0.83754 0.83167 0.81988 1.90732 1.57389 1.37383 1.57073 1.46360 1.38315 1.40180 1.12102 0.91396 0.92384 0.92691 0.95550 0.96235 0.77978 0.93571 0.91530 0.91761 0.91259 0.88658 0.86878 0.89782 0.88643 0.88229 0.87763 0.74726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.17 37.16 0.34 -1.56 16 2 C 0.12 2.03 2.80 -67.93 -0.19 1.84 16 3 H 0.10 1.89 6.90 -51.93 -0.36 1.53 16 4 C 0.14 2.82 5.56 -4.04 -0.02 2.80 16 5 N -0.73 -18.21 5.43 -59.91 -0.33 -18.54 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.81 16 7 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 10 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 N -0.60 -8.95 2.24 -173.94 -0.39 -9.34 16 15 C 0.08 0.93 9.40 59.85 0.56 1.49 16 16 C 0.52 8.13 7.21 -10.98 -0.08 8.05 16 17 O -0.54 -10.45 14.36 5.56 0.08 -10.37 16 18 C -0.15 -1.69 3.85 -27.88 -0.11 -1.80 16 19 C 0.14 1.67 3.00 -67.01 -0.20 1.47 16 20 H 0.10 1.33 7.91 -51.93 -0.41 0.92 16 21 C -0.13 -1.06 6.69 -25.10 -0.17 -1.22 16 22 C -0.16 -1.44 6.86 -26.74 -0.18 -1.62 16 23 C 0.52 6.98 8.43 -10.86 -0.09 6.89 16 24 O -0.55 -9.63 18.03 5.56 0.10 -9.53 16 25 N -0.71 -9.24 5.62 -52.77 -0.30 -9.54 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.63 6.66 -51.93 -0.35 0.29 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.37 7.84 -51.93 -0.41 -0.03 16 31 H 0.39 10.40 7.06 -40.82 -0.29 10.12 16 32 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.56 6.44 -51.92 -0.33 0.23 16 35 H 0.07 0.72 6.43 -51.93 -0.33 0.38 16 36 H 0.10 0.86 7.40 -51.93 -0.38 0.47 16 37 H 0.11 1.22 8.11 -51.93 -0.42 0.80 16 38 H 0.08 0.56 7.91 -51.93 -0.41 0.14 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.41 5.78 8.12 -40.82 -0.33 5.45 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -34.93 342.00 -6.90 -41.82 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.53 Total: 11.22 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.39 Total: 9.09 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.29 Total: -64.49 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.18 Total: -19.90 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.93 -6.90 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698849015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.875 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds