Wall clock time and date at job start Tue Mar 31 2020 02:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46499 * 109.47378 * 174.99686 * 4 2 1 6 6 C 1.36935 * 120.00152 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99846 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99978 * 180.02562 * 6 5 4 9 9 N 1.31623 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00084 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46943 * 59.99923 * 10 8 6 12 12 H 1.48500 * 109.47183 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47093 * 300.00371 * 10 8 6 14 14 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 15 15 C 1.34777 * 119.99873 * 85.00531 * 14 2 1 16 16 O 1.21284 * 119.99754 * 359.97438 * 15 14 2 17 17 C 1.50696 * 120.00137 * 179.97438 * 15 14 2 18 18 N 1.46500 * 109.47324 * 179.97438 * 17 15 14 19 19 C 1.45756 * 117.94607 * 269.73980 * 18 17 15 20 20 C 1.53101 * 110.38522 * 160.74637 * 19 18 17 21 21 C 1.53345 * 108.53149 * 51.10980 * 20 19 18 22 22 C 1.53071 * 108.42464 * 292.31267 * 21 20 19 23 23 C 1.33351 * 117.94356 * 89.99816 * 18 17 15 24 24 O 1.21275 * 118.24813 * 2.24926 * 23 18 17 25 25 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 26 26 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 28 28 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 29 29 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 30 30 H 0.97002 * 119.99569 * 0.02562 * 5 4 2 31 31 H 0.96991 * 120.00015 * 179.97438 * 9 8 6 32 32 H 0.96995 * 120.00050 * 264.72646 * 14 2 1 33 33 H 1.09004 * 109.47043 * 299.99732 * 17 15 14 34 34 H 1.09000 * 109.46978 * 59.99653 * 17 15 14 35 35 H 1.09007 * 109.30012 * 281.23505 * 19 18 17 36 36 H 1.08997 * 109.30276 * 40.60891 * 19 18 17 37 37 H 1.09000 * 109.80262 * 291.31813 * 20 19 18 38 38 H 1.08999 * 109.67849 * 170.83042 * 20 19 18 39 39 H 1.09002 * 109.66998 * 172.57363 * 21 20 19 40 40 H 1.09003 * 109.70060 * 52.06660 * 21 20 19 41 41 H 1.08997 * 109.39869 * 288.77120 * 22 21 20 42 42 H 1.09002 * 109.32520 * 168.98675 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8266 1.1905 6 6 4.1838 -1.4383 2.2070 7 1 3.6468 -1.8427 3.0522 8 6 5.5673 -1.5375 2.1517 9 7 6.2219 -1.0432 1.1223 10 14 6.5002 -2.3712 3.5388 11 1 6.0443 -3.7788 3.6658 12 1 7.9550 -2.3464 3.2419 13 1 6.2427 -1.6508 4.8116 14 7 2.0182 -0.6906 -1.1963 15 6 2.1470 -0.0182 -2.3572 16 8 1.8582 1.1585 -2.4116 17 6 2.6498 -0.7284 -3.5875 18 7 2.6985 0.2129 -4.7091 19 6 1.5141 0.3357 -5.5497 20 6 1.5518 1.6490 -6.3357 21 6 2.9085 1.7551 -7.0425 22 6 3.9956 1.9301 -5.9792 23 6 3.8255 0.8996 -4.9001 24 8 4.7633 0.6800 -4.1632 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7516 -0.1585 2.1369 29 1 1.6053 -1.7199 1.2950 30 1 3.9823 -0.4623 0.4318 31 1 7.1885 -1.1122 1.0838 32 1 2.2527 -1.6308 -1.1518 33 1 3.6492 -1.1202 -3.3980 34 1 1.9776 -1.5506 -3.8326 35 1 1.4769 -0.5033 -6.2446 36 1 0.6233 0.3190 -4.9217 37 1 1.4274 2.4908 -5.6545 38 1 0.7520 1.6567 -7.0762 39 1 2.9074 2.6157 -7.7115 40 1 3.0971 0.8464 -7.6142 41 1 3.9191 2.9264 -5.5438 42 1 4.9753 1.8115 -6.4420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699411333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:40 Heat of formation + Delta-G solvation = -92.279213 kcal Electronic energy + Delta-G solvation = -22993.791646 eV Core-core repulsion = 19586.696998 eV Total energy + Delta-G solvation = -3407.094648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79861 -40.39944 -37.78344 -37.41453 -35.46949 -34.99121 -33.11647 -31.69632 -30.61560 -28.71928 -27.43277 -25.33814 -24.56744 -23.52185 -22.29124 -21.44344 -19.59221 -19.25736 -18.37508 -17.89067 -17.57971 -16.98295 -16.72525 -16.35015 -15.93278 -15.44760 -15.26478 -15.11642 -15.02025 -14.68285 -14.30190 -14.12435 -13.95553 -13.67777 -13.64753 -13.12597 -13.02360 -12.75623 -12.71715 -12.62361 -12.22224 -12.21434 -11.91535 -11.85374 -11.81422 -11.72593 -11.14311 -10.96082 -10.73995 -10.05535 -9.75429 -9.04491 -7.94965 -5.26807 1.45790 1.46941 1.49828 1.56230 1.64453 1.90367 2.42490 2.55265 3.38411 3.59768 3.69990 3.83707 3.89521 3.93295 3.94309 4.04373 4.16926 4.28429 4.39753 4.49562 4.52511 4.57160 4.64210 4.78935 4.85096 4.85631 4.91524 4.94640 5.05486 5.09656 5.13703 5.29125 5.31271 5.39832 5.47691 5.58013 6.23644 6.41817 6.55931 7.12554 7.24965 7.30412 8.04792 8.27661 9.27577 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020288 B = 0.004191 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.808566 B = 6678.644276 C = 7755.119501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.140 3.860 3 H 0.048 0.952 4 C 0.145 3.855 5 N -0.746 5.746 6 C -0.249 4.249 7 H 0.082 0.918 8 C -0.076 4.076 9 N -0.971 5.971 10 Si 0.978 3.022 11 H -0.271 1.271 12 H -0.300 1.300 13 H -0.278 1.278 14 N -0.706 5.706 15 C 0.497 3.503 16 O -0.579 6.579 17 C 0.088 3.912 18 N -0.583 5.583 19 C 0.108 3.892 20 C -0.133 4.133 21 C -0.113 4.113 22 C -0.130 4.130 23 C 0.503 3.497 24 O -0.609 6.609 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.371 0.629 31 H 0.249 0.751 32 H 0.410 0.590 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.546 0.808 -18.551 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 H 0.067 0.933 4 C 0.019 3.981 5 N -0.389 5.389 6 C -0.380 4.380 7 H 0.100 0.900 8 C -0.269 4.269 9 N -0.621 5.621 10 Si 0.806 3.194 11 H -0.197 1.197 12 H -0.226 1.226 13 H -0.204 1.204 14 N -0.357 5.357 15 C 0.283 3.717 16 O -0.459 6.459 17 C -0.039 4.039 18 N -0.314 5.314 19 C -0.013 4.013 20 C -0.170 4.170 21 C -0.150 4.150 22 C -0.170 4.170 23 C 0.293 3.707 24 O -0.491 6.491 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.203 0.797 31 H 0.058 0.942 32 H 0.246 0.754 33 H 0.115 0.885 34 H 0.171 0.829 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.303 1.459 -18.080 23.731 hybrid contribution 1.389 -0.395 0.997 1.755 sum -13.914 1.064 -17.082 22.057 Atomic orbital electron populations 1.21960 0.92084 1.03328 1.02569 1.21082 0.95685 0.95672 0.84087 0.93344 1.21151 0.83908 0.98162 0.94909 1.42590 1.02011 1.70019 1.24330 1.19641 0.89927 1.28689 0.99755 0.89982 1.25658 0.97628 1.02976 1.00591 1.69874 1.07023 1.52672 1.32564 0.85158 0.76887 0.78724 0.78630 1.19719 1.22607 1.20421 1.45943 1.66196 1.14704 1.08907 1.21563 0.76724 0.87409 0.85981 1.90622 1.52109 1.17299 1.85890 1.21426 1.04810 0.93120 0.84591 1.47074 1.14698 1.40961 1.28648 1.21802 0.85725 1.00241 0.93544 1.21926 0.99303 0.96019 0.99796 1.21668 0.92217 1.04700 0.96411 1.21694 1.03278 0.97098 0.94909 1.21079 0.81563 0.82083 0.85943 1.90775 1.41256 1.67561 1.49538 0.92823 0.90407 0.90390 0.94610 0.93707 0.79713 0.94189 0.75436 0.88542 0.82939 0.88346 0.90664 0.92656 0.86473 0.88177 0.89751 0.88600 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.48 71.98 0.68 -2.94 16 2 C 0.14 4.88 2.73 44.99 0.12 5.01 16 3 H 0.05 2.04 7.58 -2.39 -0.02 2.03 16 4 C 0.15 5.73 5.82 86.38 0.50 6.23 16 5 N -0.75 -38.97 5.43 -343.46 -1.87 -40.84 16 6 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 7 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 8 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 9 N -0.97 -62.76 13.06 21.65 0.28 -62.48 16 10 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 N -0.71 -23.51 4.52 -442.53 -2.00 -25.51 16 15 C 0.50 17.27 7.85 87.66 0.69 17.96 16 16 O -0.58 -24.03 16.08 -3.04 -0.05 -24.08 16 17 C 0.09 2.42 5.70 85.63 0.49 2.90 16 18 N -0.58 -15.19 2.30 -830.63 -1.91 -17.10 16 19 C 0.11 1.69 6.32 86.55 0.55 2.24 16 20 C -0.13 -1.67 6.03 30.74 0.19 -1.48 16 21 C -0.11 -1.36 6.03 30.73 0.19 -1.18 16 22 C -0.13 -2.80 6.03 29.71 0.18 -2.62 16 23 C 0.50 16.11 7.44 87.71 0.65 16.76 16 24 O -0.61 -27.16 16.18 -3.01 -0.05 -27.21 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.37 21.55 7.33 -92.71 -0.68 20.87 16 31 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.41 12.59 8.60 -92.71 -0.80 11.79 16 33 H 0.10 3.21 7.13 -2.38 -0.02 3.19 16 34 H 0.15 2.58 8.01 -2.39 -0.02 2.56 16 35 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.05 0.95 8.12 -2.39 -0.02 0.93 16 38 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.83 8.13 -2.39 -0.02 0.81 16 41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -84.76 347.95 1.52 -83.24 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.46 Total: 39.16 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 5.54 Total: 25.56 kcal Atomic # 7 Polarization: -140.43 SS G_CDS: -5.50 Total: -145.93 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.10 Total: -51.29 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -84.76 1.52 -83.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699411333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.036 kcal (2) G-P(sol) polarization free energy of solvation -84.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds