Wall clock time and date at job start Tue Mar 31 2020 03:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 119.99971 * 2 1 4 4 C 1.53000 * 109.47339 * 269.99925 * 3 2 1 5 5 C 1.52999 * 109.47167 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46960 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99728 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00405 * 359.97438 * 7 6 5 9 9 C 1.38816 * 119.99859 * 179.97438 * 7 6 5 10 10 N 1.31617 * 119.99865 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99873 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47485 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46945 * 120.00707 * 11 9 7 14 14 H 1.48508 * 109.47186 * 239.99990 * 11 9 7 15 15 C 1.34773 * 119.99862 * 179.97438 * 2 1 3 16 16 O 1.21280 * 120.00278 * 179.97438 * 15 2 1 17 17 C 1.50700 * 119.99954 * 0.02562 * 15 2 1 18 18 N 1.46498 * 109.47501 * 179.97438 * 17 15 2 19 19 C 1.46768 * 124.34879 * 89.99466 * 18 17 15 20 20 C 1.54480 * 105.55098 * 197.08340 * 19 18 17 21 21 C 1.54631 * 101.76472 * 334.54015 * 20 19 18 22 22 C 1.34621 * 124.47196 * 270.02709 * 18 17 15 23 23 O 1.21286 * 124.90539 * 359.55259 * 22 18 17 24 24 H 1.09005 * 109.47278 * 270.00197 * 1 2 3 25 25 H 1.09009 * 109.46949 * 29.99612 * 1 2 3 26 26 H 1.08998 * 109.47443 * 150.00032 * 1 2 3 27 27 H 1.08997 * 109.47379 * 30.00399 * 3 2 1 28 28 H 1.09003 * 109.47056 * 149.99683 * 3 2 1 29 29 H 1.09004 * 109.46946 * 300.00290 * 4 3 2 30 30 H 1.09000 * 109.46942 * 60.00285 * 4 3 2 31 31 H 1.09004 * 109.47024 * 299.99752 * 5 4 3 32 32 H 1.08991 * 109.47598 * 59.99955 * 5 4 3 33 33 H 0.97000 * 120.00014 * 359.97438 * 6 5 4 34 34 H 0.97002 * 120.00026 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47506 * 59.99693 * 17 15 2 36 36 H 1.08998 * 109.47494 * 299.99513 * 17 15 2 37 37 H 1.09002 * 110.24468 * 78.03845 * 19 18 17 38 38 H 1.09002 * 110.24463 * 316.12602 * 19 18 17 39 39 H 1.08995 * 110.97082 * 92.66028 * 20 19 18 40 40 H 1.09001 * 110.96924 * 216.42557 * 20 19 18 41 41 H 1.09000 * 110.48694 * 143.47575 * 21 20 19 42 42 H 1.08994 * 110.49106 * 266.12244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4424 6 7 3.4617 3.4583 -2.8236 7 6 4.1348 4.6243 -3.0738 8 1 4.4857 5.2322 -2.2529 9 6 4.3661 5.0251 -4.3825 10 7 3.9381 4.2846 -5.3829 11 14 5.2836 6.6160 -4.7238 12 1 5.6549 7.2590 -3.4378 13 1 6.5132 6.3210 -5.5024 14 1 4.4126 7.5325 -5.5027 15 6 2.1388 -1.1672 0.0005 16 8 3.3517 -1.1673 0.0001 17 6 1.3853 -2.4723 0.0005 18 7 2.3372 -3.5859 0.0005 19 6 2.8753 -4.2153 1.2123 20 6 4.1226 -5.0017 0.7515 21 6 3.7938 -5.2715 -0.7351 22 6 2.8327 -4.1647 -1.1093 23 8 2.5496 -3.8447 -2.2444 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.0416 0.9507 -1.9563 30 1 1.5001 1.8408 -1.9563 31 1 2.6293 3.7950 -0.9285 32 1 4.1704 2.9044 -0.9288 33 1 3.1463 2.9126 -3.5609 34 1 4.0994 4.5648 -6.2975 35 1 0.7589 -2.5302 -0.8897 36 1 0.7584 -2.5299 0.8903 37 1 2.1394 -4.8941 1.6434 38 1 3.1570 -3.4538 1.9396 39 1 5.0234 -4.3957 0.8480 40 1 4.2214 -5.9356 1.3049 41 1 4.6972 -5.2137 -1.3423 42 1 3.3176 -6.2452 -0.8499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699494905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:07 Heat of formation + Delta-G solvation = -51.722223 kcal Electronic energy + Delta-G solvation = -22268.633383 eV Core-core repulsion = 18863.297418 eV Total energy + Delta-G solvation = -3405.335964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78799 -39.48187 -36.57814 -36.08323 -34.79717 -33.24323 -32.12777 -29.93664 -27.87818 -27.75043 -26.95590 -24.89098 -22.77569 -22.18125 -20.95856 -20.13914 -19.03711 -17.56698 -17.03281 -16.99185 -16.60254 -15.84506 -15.77888 -15.06172 -14.50933 -14.44614 -13.98865 -13.80865 -13.73239 -13.37884 -13.19704 -13.15023 -12.95358 -12.78284 -12.56148 -12.32831 -11.89729 -11.81063 -11.71079 -11.30486 -10.88549 -10.82186 -10.69291 -10.35541 -10.12482 -9.98219 -9.96129 -9.67146 -8.90211 -8.81431 -8.67997 -6.85255 -5.69625 -2.98493 2.30270 2.55299 2.66147 3.10074 3.47852 3.52736 3.55652 4.08658 4.19029 4.36512 4.54290 4.65142 4.70784 4.80811 4.87106 5.02799 5.13342 5.15425 5.23731 5.27029 5.42144 5.44621 5.51273 5.53737 5.62594 5.71641 5.73167 5.94489 6.09921 6.16017 6.35327 6.44505 6.54608 6.84578 6.92000 6.94369 7.29684 7.75988 7.97714 8.13104 8.49051 9.59745 10.18897 10.53527 11.53516 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022625 B = 0.003090 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.276186 B = 9059.026980 C = 9633.174463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.615 5.615 3 C 0.120 3.880 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C 0.492 3.508 16 O -0.524 6.524 17 C 0.110 3.890 18 N -0.608 5.608 19 C 0.106 3.894 20 C -0.130 4.130 21 C -0.152 4.152 22 C 0.521 3.479 23 O -0.525 6.525 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 -20.783 18.510 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.349 5.349 3 C -0.002 4.002 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.278 3.722 16 O -0.399 6.399 17 C -0.016 4.016 18 N -0.342 5.342 19 C -0.017 4.017 20 C -0.168 4.168 21 C -0.192 4.192 22 C 0.309 3.691 23 O -0.400 6.400 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.058 -20.407 17.940 28.341 hybrid contribution 0.256 0.884 -0.507 1.051 sum -7.802 -19.523 17.433 27.312 Atomic orbital electron populations 1.21854 0.79525 1.03787 1.01705 1.47927 1.07025 1.06330 1.73663 1.21489 0.97396 0.83328 0.98030 1.22057 1.01116 0.98989 0.95679 1.20529 0.95971 0.91850 0.88730 1.42373 1.68321 1.25965 1.01126 1.19295 1.27742 0.98088 0.91825 0.91109 1.24769 1.01792 0.99091 0.95571 1.69684 1.51567 1.38848 0.98124 0.86096 0.79181 0.83076 0.77730 1.20550 1.21860 1.21883 1.21158 0.88681 0.85685 0.76725 1.90727 1.13718 1.87027 1.48398 1.21227 0.91171 0.83912 1.05258 1.47878 1.45607 1.32833 1.07893 1.22075 0.95503 0.96821 0.87317 1.22578 0.98186 1.01070 0.94971 1.22294 1.00443 0.98534 0.97953 1.21021 0.80809 0.83058 0.84194 1.90762 1.61614 1.66572 1.21052 0.92402 0.90313 0.91203 0.90441 0.89878 0.91619 0.91982 0.96431 0.96303 0.78289 0.93580 0.87042 0.87458 0.90966 0.90309 0.89629 0.89147 0.87813 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.24 59.85 0.61 1.19 16 2 N -0.61 -7.53 2.87 -181.57 -0.52 -8.05 16 3 C 0.12 1.71 5.41 -4.04 -0.02 1.69 16 4 C -0.14 -2.54 5.65 -26.73 -0.15 -2.69 16 5 C 0.16 3.43 6.26 -4.04 -0.03 3.40 16 6 N -0.73 -20.17 5.60 -59.91 -0.34 -20.51 16 7 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16 8 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 9 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 10 N -0.93 -29.72 13.06 55.49 0.72 -29.00 16 11 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 14 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 15 C 0.49 6.79 7.74 -10.99 -0.09 6.70 16 16 O -0.52 -9.55 16.01 5.56 0.09 -9.46 16 17 C 0.11 1.09 4.97 -5.19 -0.03 1.06 16 18 N -0.61 -6.48 2.43 -173.72 -0.42 -6.90 16 19 C 0.11 0.72 7.34 -3.12 -0.02 0.70 16 20 C -0.13 -0.80 7.18 -25.10 -0.18 -0.98 16 21 C -0.15 -1.26 6.86 -26.74 -0.18 -1.45 16 22 C 0.52 6.82 8.03 -10.77 -0.09 6.73 16 23 O -0.52 -9.40 17.60 5.55 0.10 -9.31 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.62 8.07 -51.92 -0.42 0.20 16 26 H 0.07 0.43 6.44 -51.93 -0.33 0.10 16 27 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.38 11.14 7.67 -40.82 -0.31 10.83 16 34 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.11 1.10 7.19 -51.93 -0.37 0.73 16 36 H 0.11 0.62 8.11 -51.93 -0.42 0.20 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -39.68 352.30 -7.36 -47.04 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.86 Total: 4.04 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.42 Total: 8.54 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.55 Total: -64.45 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.19 Total: -18.77 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -39.68 -7.36 -47.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699494905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.686 kcal (2) G-P(sol) polarization free energy of solvation -39.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds