Wall clock time and date at job start Tue Mar 31 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 119.99971 * 2 1 4 4 C 1.53000 * 109.47339 * 269.99925 * 3 2 1 5 5 C 1.52999 * 109.47167 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46960 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99728 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00405 * 359.97438 * 7 6 5 9 9 C 1.38816 * 119.99859 * 179.97438 * 7 6 5 10 10 N 1.31617 * 119.99865 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99873 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47485 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46945 * 120.00707 * 11 9 7 14 14 H 1.48508 * 109.47186 * 239.99990 * 11 9 7 15 15 C 1.34773 * 119.99862 * 179.97438 * 2 1 3 16 16 O 1.21280 * 120.00278 * 179.97438 * 15 2 1 17 17 C 1.50700 * 119.99954 * 0.02562 * 15 2 1 18 18 N 1.46498 * 109.47501 * 179.97438 * 17 15 2 19 19 C 1.46768 * 124.34879 * 89.99466 * 18 17 15 20 20 C 1.54480 * 105.55098 * 197.08340 * 19 18 17 21 21 C 1.54631 * 101.76472 * 334.54015 * 20 19 18 22 22 C 1.34621 * 124.47196 * 270.02709 * 18 17 15 23 23 O 1.21286 * 124.90539 * 359.55259 * 22 18 17 24 24 H 1.09005 * 109.47278 * 270.00197 * 1 2 3 25 25 H 1.09009 * 109.46949 * 29.99612 * 1 2 3 26 26 H 1.08998 * 109.47443 * 150.00032 * 1 2 3 27 27 H 1.08997 * 109.47379 * 30.00399 * 3 2 1 28 28 H 1.09003 * 109.47056 * 149.99683 * 3 2 1 29 29 H 1.09004 * 109.46946 * 300.00290 * 4 3 2 30 30 H 1.09000 * 109.46942 * 60.00285 * 4 3 2 31 31 H 1.09004 * 109.47024 * 299.99752 * 5 4 3 32 32 H 1.08991 * 109.47598 * 59.99955 * 5 4 3 33 33 H 0.97000 * 120.00014 * 359.97438 * 6 5 4 34 34 H 0.97002 * 120.00026 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47506 * 59.99693 * 17 15 2 36 36 H 1.08998 * 109.47494 * 299.99513 * 17 15 2 37 37 H 1.09002 * 110.24468 * 78.03845 * 19 18 17 38 38 H 1.09002 * 110.24463 * 316.12602 * 19 18 17 39 39 H 1.08995 * 110.97082 * 92.66028 * 20 19 18 40 40 H 1.09001 * 110.96924 * 216.42557 * 20 19 18 41 41 H 1.09000 * 110.48694 * 143.47575 * 21 20 19 42 42 H 1.08994 * 110.49106 * 266.12244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4424 6 7 3.4617 3.4583 -2.8236 7 6 4.1348 4.6243 -3.0738 8 1 4.4857 5.2322 -2.2529 9 6 4.3661 5.0251 -4.3825 10 7 3.9381 4.2846 -5.3829 11 14 5.2836 6.6160 -4.7238 12 1 5.6549 7.2590 -3.4378 13 1 6.5132 6.3210 -5.5024 14 1 4.4126 7.5325 -5.5027 15 6 2.1388 -1.1672 0.0005 16 8 3.3517 -1.1673 0.0001 17 6 1.3853 -2.4723 0.0005 18 7 2.3372 -3.5859 0.0005 19 6 2.8753 -4.2153 1.2123 20 6 4.1226 -5.0017 0.7515 21 6 3.7938 -5.2715 -0.7351 22 6 2.8327 -4.1647 -1.1093 23 8 2.5496 -3.8447 -2.2444 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.0416 0.9507 -1.9563 30 1 1.5001 1.8408 -1.9563 31 1 2.6293 3.7950 -0.9285 32 1 4.1704 2.9044 -0.9288 33 1 3.1463 2.9126 -3.5609 34 1 4.0994 4.5648 -6.2975 35 1 0.7589 -2.5302 -0.8897 36 1 0.7584 -2.5299 0.8903 37 1 2.1394 -4.8941 1.6434 38 1 3.1570 -3.4538 1.9396 39 1 5.0234 -4.3957 0.8480 40 1 4.2214 -5.9356 1.3049 41 1 4.6972 -5.2137 -1.3423 42 1 3.3176 -6.2452 -0.8499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699494905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:06 Heat of formation + Delta-G solvation = -81.313653 kcal Electronic energy + Delta-G solvation = -22269.916564 eV Core-core repulsion = 18863.297418 eV Total energy + Delta-G solvation = -3406.619145 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68201 -40.50043 -37.68430 -37.36108 -36.43102 -34.35052 -33.67976 -31.69843 -28.84901 -28.47402 -27.92646 -26.47079 -24.54274 -22.80413 -22.62705 -21.11958 -19.97774 -19.20400 -18.48795 -17.93806 -17.44131 -16.94425 -16.75606 -16.45148 -16.04394 -15.89814 -15.38433 -15.11100 -14.78808 -14.64677 -14.52259 -14.09821 -13.80234 -13.59113 -13.46006 -13.37602 -13.21666 -13.00032 -12.81732 -12.70873 -12.44565 -12.31303 -12.07210 -11.91808 -11.89173 -11.83504 -11.16754 -11.00574 -10.94851 -9.77509 -9.71254 -9.08429 -8.00141 -5.31390 1.35716 1.43623 1.46338 1.52390 1.56653 1.86340 2.21638 2.52698 3.33143 3.40500 3.49912 3.62884 3.81211 3.97805 4.04885 4.11141 4.16688 4.21208 4.24414 4.34813 4.48094 4.54397 4.65273 4.66414 4.69989 4.72429 4.83927 4.86917 4.94686 5.06616 5.21306 5.22860 5.23195 5.40144 5.43371 5.51869 6.03525 6.21322 6.32879 7.03186 7.12865 7.26263 8.00686 8.24568 9.24127 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022625 B = 0.003090 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.276186 B = 9059.026980 C = 9633.174463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.614 5.614 3 C 0.129 3.871 4 C -0.122 4.122 5 C 0.156 3.844 6 N -0.751 5.751 7 C -0.250 4.250 8 H 0.080 0.920 9 C -0.081 4.081 10 N -0.973 5.973 11 Si 0.982 3.018 12 H -0.262 1.262 13 H -0.293 1.293 14 H -0.288 1.288 15 C 0.481 3.519 16 O -0.581 6.581 17 C 0.111 3.889 18 N -0.609 5.609 19 C 0.100 3.900 20 C -0.122 4.122 21 C -0.148 4.148 22 C 0.500 3.500 23 O -0.591 6.591 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.013 0.987 33 H 0.370 0.630 34 H 0.252 0.748 35 H 0.110 0.890 36 H 0.159 0.841 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 -21.252 21.267 31.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.346 5.346 3 C 0.005 3.995 4 C -0.161 4.161 5 C 0.029 3.971 6 N -0.394 5.394 7 C -0.382 4.382 8 H 0.098 0.902 9 C -0.273 4.273 10 N -0.624 5.624 11 Si 0.810 3.190 12 H -0.186 1.186 13 H -0.220 1.220 14 H -0.215 1.215 15 C 0.269 3.731 16 O -0.460 6.460 17 C -0.015 4.015 18 N -0.341 5.341 19 C -0.021 4.021 20 C -0.160 4.160 21 C -0.188 4.188 22 C 0.290 3.710 23 O -0.472 6.472 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.201 0.799 34 H 0.061 0.939 35 H 0.128 0.872 36 H 0.176 0.824 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.148 0.852 41 H 0.113 0.887 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.383 -20.880 20.802 30.931 hybrid contribution 0.616 1.016 -1.294 1.757 sum -8.767 -19.864 19.508 29.189 Atomic orbital electron populations 1.22200 0.76371 1.04725 1.04224 1.48046 1.08927 1.05129 1.72535 1.21291 0.97925 0.85319 0.94930 1.21872 0.99880 0.96026 0.98368 1.20699 0.96390 0.93950 0.86020 1.42653 1.68292 1.25491 1.02954 1.19745 1.27403 0.98723 0.92310 0.90244 1.25730 1.03209 1.02945 0.95376 1.69859 1.53240 1.40939 0.98362 0.84950 0.77379 0.78643 0.78020 1.18649 1.22043 1.21505 1.21979 0.88327 0.87275 0.75522 1.90698 1.16260 1.87926 1.51126 1.21434 0.90917 0.81599 1.07508 1.48165 1.45007 1.32316 1.08642 1.22414 0.96681 0.97306 0.85728 1.22636 0.97236 1.02513 0.93570 1.22365 0.99044 0.98113 0.99283 1.21954 0.81100 0.84067 0.83834 1.90710 1.63987 1.68856 1.23600 0.88960 0.90305 0.89505 0.86991 0.91602 0.95541 0.91546 0.94375 0.96917 0.79851 0.93895 0.87198 0.82382 0.87053 0.90481 0.91276 0.85212 0.88721 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 10.24 127.77 1.31 2.14 16 2 N -0.61 -14.26 2.87 -846.75 -2.43 -16.69 16 3 C 0.13 3.58 5.41 86.38 0.47 4.04 16 4 C -0.12 -4.55 5.65 30.59 0.17 -4.38 16 5 C 0.16 6.86 6.26 86.38 0.54 7.40 16 6 N -0.75 -42.26 5.60 -343.45 -1.92 -44.19 16 7 C -0.25 -14.98 9.99 84.03 0.84 -14.14 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 10 N -0.97 -63.36 13.06 21.65 0.28 -63.08 16 11 Si 0.98 48.24 29.55 68.60 2.03 50.26 16 12 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 14 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 15 C 0.48 13.18 7.74 87.66 0.68 13.85 16 16 O -0.58 -22.05 16.01 -3.03 -0.05 -22.10 16 17 C 0.11 2.02 4.97 85.63 0.43 2.44 16 18 N -0.61 -12.34 2.43 -822.00 -2.00 -14.34 16 19 C 0.10 1.10 7.34 86.83 0.64 1.74 16 20 C -0.12 -1.23 7.18 31.65 0.23 -1.00 16 21 C -0.15 -2.34 6.86 30.59 0.21 -2.13 16 22 C 0.50 13.36 8.03 87.87 0.71 14.07 16 23 O -0.59 -22.52 17.60 -3.05 -0.05 -22.57 16 24 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.08 1.03 8.07 -2.38 -0.02 1.01 16 26 H 0.09 0.82 6.44 -2.39 -0.02 0.80 16 27 H 0.11 2.35 8.07 -2.39 -0.02 2.33 16 28 H 0.07 2.08 7.42 -2.39 -0.02 2.06 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.37 22.36 7.67 -92.71 -0.71 21.65 16 34 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.11 2.07 7.19 -2.39 -0.02 2.05 16 36 H 0.16 1.18 8.11 -2.39 -0.02 1.16 16 37 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 40 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -91.96 352.30 2.83 -89.13 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.29 Total: 23.99 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 6.68 Total: 19.58 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -6.07 Total: -138.29 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.10 Total: -44.67 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.26 kcal Total: -91.96 2.83 -89.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699494905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.820 kcal (2) G-P(sol) polarization free energy of solvation -91.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds