Wall clock time and date at job start Tue Mar 31 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99532 * 2 1 4 4 N 1.34773 * 119.99640 * 179.97438 * 2 1 3 5 5 C 1.46919 * 120.63573 * 355.02239 * 4 2 1 6 6 C 1.53199 * 108.76614 * 126.39978 * 5 4 2 7 7 C 1.53043 * 109.31011 * 54.66040 * 6 5 4 8 8 C 1.53039 * 109.52414 * 298.61176 * 7 6 5 9 9 H 1.08998 * 109.50125 * 301.42126 * 8 7 6 10 10 C 1.52999 * 109.49633 * 181.32459 * 8 7 6 11 11 N 1.46898 * 109.47070 * 175.00248 * 10 8 7 12 12 C 1.46904 * 111.00112 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47267 * 179.97438 * 12 11 10 14 14 O 1.21293 * 120.00078 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00149 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00543 * 179.97438 * 15 13 12 17 17 H 1.08000 * 119.99412 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00521 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99814 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00134 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47059 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47296 * 120.00002 * 20 18 16 23 23 H 1.48499 * 109.46897 * 240.00101 * 20 18 16 24 24 C 1.46929 * 120.62605 * 175.03869 * 4 2 1 25 25 H 1.08997 * 109.47510 * 185.38844 * 1 2 3 26 26 H 1.08996 * 109.46966 * 305.38533 * 1 2 3 27 27 H 1.09001 * 109.47032 * 65.38854 * 1 2 3 28 28 H 1.08992 * 109.58976 * 246.19930 * 5 4 2 29 29 H 1.09009 * 109.58459 * 6.62551 * 5 4 2 30 30 H 1.08992 * 109.51144 * 294.69795 * 6 5 4 31 31 H 1.09004 * 109.48488 * 174.60023 * 6 5 4 32 32 H 1.08998 * 109.46126 * 178.59748 * 7 6 5 33 33 H 1.09002 * 109.46007 * 58.62419 * 7 6 5 34 34 H 1.09008 * 109.46799 * 294.99825 * 10 8 7 35 35 H 1.08998 * 109.47259 * 54.99571 * 10 8 7 36 36 H 1.00905 * 111.00161 * 303.95261 * 11 10 8 37 37 H 1.09006 * 109.47060 * 299.99825 * 12 11 10 38 38 H 1.08995 * 109.47255 * 59.99766 * 12 11 10 39 39 H 0.97006 * 119.99730 * 0.02562 * 15 13 12 40 40 H 0.96998 * 120.00465 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.58174 * 113.80297 * 24 4 2 42 42 H 1.08996 * 109.59146 * 353.37918 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4645 -2.4452 0.1108 6 6 1.8851 -3.3480 -1.0532 7 6 3.4097 -3.4814 -1.0648 8 6 4.0422 -2.1030 -1.2700 9 1 3.6877 -1.6760 -2.2082 10 6 5.5652 -2.2416 -1.3146 11 7 6.1664 -0.9390 -1.6304 12 6 7.6314 -1.0340 -1.6823 13 6 8.2112 0.3182 -2.0086 14 8 7.4764 1.2677 -2.1805 15 7 9.5464 0.4726 -2.1084 16 6 10.0740 1.7026 -2.4057 17 1 9.4196 2.5479 -2.5596 18 6 11.4504 1.8617 -2.5091 19 7 12.2466 0.8331 -2.3224 20 14 12.1692 3.5378 -2.9136 21 1 11.0691 4.5220 -3.0761 22 1 13.0636 3.9721 -1.8107 23 1 12.9461 3.4516 -4.1762 24 6 3.6460 -1.1858 -0.1088 25 1 -0.3634 -1.0231 0.0965 26 1 -0.3633 0.5951 0.8378 27 1 -0.3633 0.4280 -0.9343 28 1 1.7173 -2.9255 1.0559 29 1 0.3900 -2.2669 0.0650 30 1 1.5511 -2.9093 -1.9934 31 1 1.4347 -4.3330 -0.9305 32 1 3.7101 -4.1434 -1.8770 33 1 3.7451 -3.8971 -0.1146 34 1 5.9275 -2.5834 -0.3449 35 1 5.8420 -2.9651 -2.0814 36 1 5.7975 -0.5704 -2.4942 37 1 8.0084 -1.3676 -0.7154 38 1 7.9222 -1.7489 -2.4520 39 1 10.1341 -0.2867 -1.9705 40 1 13.2075 0.9440 -2.3949 41 1 4.0768 -1.5634 0.8186 42 1 4.0110 -0.1766 -0.2994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752792204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:30 Heat of formation + Delta-G solvation = -75.367290 kcal Electronic energy + Delta-G solvation = -22216.905273 eV Core-core repulsion = 18810.543981 eV Total energy + Delta-G solvation = -3406.361292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.29157 -38.33565 -37.71398 -35.55419 -33.87346 -33.03112 -31.65370 -31.13900 -29.88451 -27.20077 -25.32866 -24.93274 -23.53287 -21.91708 -20.68109 -19.15269 -19.08113 -17.83399 -17.28617 -16.27621 -16.01287 -15.58571 -15.24471 -14.89416 -14.66848 -14.45644 -14.07278 -13.83451 -13.61496 -13.46250 -13.35790 -13.03344 -12.71802 -12.58032 -12.19583 -12.02730 -11.78212 -11.47240 -11.42677 -11.31606 -11.05982 -10.97146 -10.79433 -10.59252 -10.30166 -10.17665 -9.78681 -9.47273 -8.74074 -8.40079 -7.99864 -7.90754 -6.37443 -3.77851 2.57831 2.91173 3.20018 3.30225 3.38374 3.96335 4.09557 4.28422 4.41836 4.44903 4.58724 4.73766 4.81429 4.88956 5.06466 5.16459 5.19911 5.20535 5.30062 5.34124 5.41955 5.48113 5.57190 5.63356 5.66402 5.70460 5.80428 5.82885 5.91502 6.02448 6.18987 6.25799 6.32205 6.43912 7.25772 7.33156 7.60083 7.69924 8.11710 8.13739 8.66513 9.23035 9.59464 10.11436 10.80583 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.003005 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.795334 B = 9316.934537 C =10154.141146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.507 3.493 3 O -0.537 6.537 4 N -0.616 5.616 5 C 0.100 3.900 6 C -0.134 4.134 7 C -0.115 4.115 8 C -0.097 4.097 9 H 0.073 0.927 10 C 0.066 3.934 11 N -0.669 5.669 12 C 0.051 3.949 13 C 0.441 3.559 14 O -0.580 6.580 15 N -0.566 5.566 16 C -0.297 4.297 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.903 5.903 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.122 3.878 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.349 0.651 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.392 0.608 40 H 0.270 0.730 41 H 0.064 0.936 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.019 -14.023 4.082 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.296 3.704 3 O -0.414 6.414 4 N -0.350 5.350 5 C -0.023 4.023 6 C -0.173 4.173 7 C -0.153 4.153 8 C -0.117 4.117 9 H 0.092 0.908 10 C -0.064 4.064 11 N -0.301 5.301 12 C -0.081 4.081 13 C 0.226 3.774 14 O -0.464 6.464 15 N -0.203 5.203 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.545 5.545 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.000 4.000 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.169 0.831 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.996 -12.574 4.614 24.904 hybrid contribution 1.026 -0.382 -0.957 1.454 sum -19.970 -12.956 3.658 24.084 Atomic orbital electron populations 1.22042 0.92353 1.04228 1.05246 1.20781 0.90457 0.83307 0.75890 1.90785 1.70471 1.30917 1.49189 1.48247 1.07900 1.05786 1.73101 1.21896 0.97307 0.84293 0.98776 1.21912 0.96682 0.99701 0.98957 1.21557 0.94689 0.96712 1.02369 1.21497 0.95018 0.95511 0.99654 0.90817 1.21961 0.92908 0.90722 1.00850 1.60074 1.04400 1.23663 1.41962 1.21663 0.88574 0.96583 1.01317 1.19836 0.83192 0.89818 0.84523 1.90545 1.59191 1.41459 1.55158 1.41871 1.04845 1.11670 1.61890 1.19767 0.90733 0.88093 1.44062 0.87875 1.25254 0.96001 0.99188 0.97589 1.69620 1.04447 1.30255 1.50200 0.85803 0.78938 0.81775 0.77865 1.19186 1.20755 1.20818 1.21639 0.77985 1.03117 0.97271 0.90073 0.88954 0.88826 0.91321 0.89229 0.91419 0.90701 0.91569 0.91540 0.90916 0.95177 0.83133 0.89625 0.93963 0.77507 0.91991 0.91804 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 10.12 36.01 0.36 -0.98 16 2 C 0.51 6.42 7.80 -10.98 -0.09 6.34 16 3 O -0.54 -9.81 16.53 5.56 0.09 -9.72 16 4 N -0.62 -6.66 2.97 -172.76 -0.51 -7.17 16 5 C 0.10 0.66 6.36 -3.71 -0.02 0.63 16 6 C -0.13 -0.83 6.08 -26.61 -0.16 -0.99 16 7 C -0.12 -0.88 5.17 -26.69 -0.14 -1.02 16 8 C -0.10 -1.04 2.48 -90.50 -0.22 -1.27 16 9 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 10 C 0.07 0.80 5.08 -3.83 -0.02 0.78 16 11 N -0.67 -11.12 5.70 -115.06 -0.66 -11.78 16 12 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 13 C 0.44 10.79 7.82 -10.99 -0.09 10.70 16 14 O -0.58 -16.45 15.78 5.55 0.09 -16.36 16 15 N -0.57 -14.76 5.29 -10.97 -0.06 -14.82 16 16 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 17 H 0.10 3.12 7.16 -52.49 -0.38 2.75 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -25.08 13.05 55.50 0.72 -24.36 16 20 Si 0.93 21.60 29.55 -169.99 -5.02 16.57 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.12 1.55 5.52 -3.71 -0.02 1.53 16 25 H 0.08 0.37 5.10 -51.93 -0.27 0.11 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.39 5.04 -51.92 -0.26 0.13 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.35 6.13 8.43 -39.29 -0.33 5.80 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.11 1.86 6.82 -51.93 -0.35 1.50 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -35.26 342.57 -7.39 -42.65 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.54 Total: 11.39 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -0.67 Total: 8.43 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.50 Total: -58.13 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.18 Total: -26.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.26 -7.39 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752792204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.715 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds