Wall clock time and date at job start Tue Mar 31 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99532 * 2 1 4 4 N 1.34773 * 119.99640 * 179.97438 * 2 1 3 5 5 C 1.46919 * 120.63573 * 355.02239 * 4 2 1 6 6 C 1.53199 * 108.76614 * 126.39978 * 5 4 2 7 7 C 1.53043 * 109.31011 * 54.66040 * 6 5 4 8 8 C 1.53039 * 109.52414 * 298.61176 * 7 6 5 9 9 H 1.08998 * 109.50125 * 301.42126 * 8 7 6 10 10 C 1.52999 * 109.49633 * 181.32459 * 8 7 6 11 11 N 1.46898 * 109.47070 * 175.00248 * 10 8 7 12 12 C 1.46904 * 111.00112 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47267 * 179.97438 * 12 11 10 14 14 O 1.21293 * 120.00078 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00149 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00543 * 179.97438 * 15 13 12 17 17 H 1.08000 * 119.99412 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00521 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99814 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00134 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47059 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47296 * 120.00002 * 20 18 16 23 23 H 1.48499 * 109.46897 * 240.00101 * 20 18 16 24 24 C 1.46929 * 120.62605 * 175.03869 * 4 2 1 25 25 H 1.08997 * 109.47510 * 185.38844 * 1 2 3 26 26 H 1.08996 * 109.46966 * 305.38533 * 1 2 3 27 27 H 1.09001 * 109.47032 * 65.38854 * 1 2 3 28 28 H 1.08992 * 109.58976 * 246.19930 * 5 4 2 29 29 H 1.09009 * 109.58459 * 6.62551 * 5 4 2 30 30 H 1.08992 * 109.51144 * 294.69795 * 6 5 4 31 31 H 1.09004 * 109.48488 * 174.60023 * 6 5 4 32 32 H 1.08998 * 109.46126 * 178.59748 * 7 6 5 33 33 H 1.09002 * 109.46007 * 58.62419 * 7 6 5 34 34 H 1.09008 * 109.46799 * 294.99825 * 10 8 7 35 35 H 1.08998 * 109.47259 * 54.99571 * 10 8 7 36 36 H 1.00905 * 111.00161 * 303.95261 * 11 10 8 37 37 H 1.09006 * 109.47060 * 299.99825 * 12 11 10 38 38 H 1.08995 * 109.47255 * 59.99766 * 12 11 10 39 39 H 0.97006 * 119.99730 * 0.02562 * 15 13 12 40 40 H 0.96998 * 120.00465 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.58174 * 113.80297 * 24 4 2 42 42 H 1.08996 * 109.59146 * 353.37918 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4645 -2.4452 0.1108 6 6 1.8851 -3.3480 -1.0532 7 6 3.4097 -3.4814 -1.0648 8 6 4.0422 -2.1030 -1.2700 9 1 3.6877 -1.6760 -2.2082 10 6 5.5652 -2.2416 -1.3146 11 7 6.1664 -0.9390 -1.6304 12 6 7.6314 -1.0340 -1.6823 13 6 8.2112 0.3182 -2.0086 14 8 7.4764 1.2677 -2.1805 15 7 9.5464 0.4726 -2.1084 16 6 10.0740 1.7026 -2.4057 17 1 9.4196 2.5479 -2.5596 18 6 11.4504 1.8617 -2.5091 19 7 12.2466 0.8331 -2.3224 20 14 12.1692 3.5378 -2.9136 21 1 11.0691 4.5220 -3.0761 22 1 13.0636 3.9721 -1.8107 23 1 12.9461 3.4516 -4.1762 24 6 3.6460 -1.1858 -0.1088 25 1 -0.3634 -1.0231 0.0965 26 1 -0.3633 0.5951 0.8378 27 1 -0.3633 0.4280 -0.9343 28 1 1.7173 -2.9255 1.0559 29 1 0.3900 -2.2669 0.0650 30 1 1.5511 -2.9093 -1.9934 31 1 1.4347 -4.3330 -0.9305 32 1 3.7101 -4.1434 -1.8770 33 1 3.7451 -3.8971 -0.1146 34 1 5.9275 -2.5834 -0.3449 35 1 5.8420 -2.9651 -2.0814 36 1 5.7975 -0.5704 -2.4942 37 1 8.0084 -1.3676 -0.7154 38 1 7.9222 -1.7489 -2.4520 39 1 10.1341 -0.2867 -1.9705 40 1 13.2075 0.9440 -2.3949 41 1 4.0768 -1.5634 0.8186 42 1 4.0110 -0.1766 -0.2994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752792204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:29 Heat of formation + Delta-G solvation = -103.075549 kcal Electronic energy + Delta-G solvation = -22218.106793 eV Core-core repulsion = 18810.543981 eV Total energy + Delta-G solvation = -3407.562812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18859 -40.17991 -38.79494 -36.78963 -35.89741 -34.05862 -33.28294 -32.42290 -30.69716 -28.62244 -26.60496 -26.07125 -24.88079 -22.74602 -21.64601 -20.97792 -19.93922 -19.87859 -18.17920 -17.79673 -17.23622 -16.80491 -16.45319 -16.33475 -16.03817 -15.61158 -15.41430 -15.28624 -14.80883 -14.49875 -14.24742 -14.09773 -13.89893 -13.56654 -13.51331 -13.13603 -13.11951 -12.97734 -12.86979 -12.46109 -12.42298 -12.13792 -11.96930 -11.80249 -11.58540 -11.54031 -11.39968 -10.75898 -10.37505 -10.03911 -9.63090 -9.30020 -8.49291 -5.98116 1.34521 1.39564 1.54324 1.62587 2.02717 2.10128 2.27654 2.91111 3.17708 3.48917 3.69122 3.78090 3.88355 4.01535 4.12933 4.20374 4.30694 4.39279 4.41098 4.50668 4.58650 4.61724 4.66822 4.71127 4.76299 4.78391 4.92791 4.96932 5.11119 5.15416 5.18184 5.32677 5.38682 5.48206 5.58571 5.87903 6.10416 6.35523 6.48733 6.58129 7.10526 7.21119 7.53527 8.09985 8.68472 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.003005 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.795334 B = 9316.934537 C =10154.141146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.492 3.508 3 O -0.611 6.611 4 N -0.613 5.613 5 C 0.093 3.907 6 C -0.130 4.130 7 C -0.110 4.110 8 C -0.087 4.087 9 H 0.056 0.944 10 C 0.068 3.932 11 N -0.688 5.688 12 C 0.067 3.933 13 C 0.435 3.565 14 O -0.626 6.626 15 N -0.573 5.573 16 C -0.335 4.335 17 H 0.075 0.925 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.993 3.007 21 H -0.276 1.276 22 H -0.269 1.269 23 H -0.268 1.268 24 C 0.122 3.878 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.340 0.660 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.068 0.932 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 -16.794 4.359 28.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.283 3.717 3 O -0.493 6.493 4 N -0.345 5.345 5 C -0.028 4.028 6 C -0.168 4.168 7 C -0.148 4.148 8 C -0.107 4.107 9 H 0.075 0.925 10 C -0.061 4.061 11 N -0.321 5.321 12 C -0.065 4.065 13 C 0.222 3.778 14 O -0.513 6.513 15 N -0.210 5.210 16 C -0.465 4.465 17 H 0.093 0.907 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.817 3.183 21 H -0.201 1.201 22 H -0.194 1.194 23 H -0.193 1.193 24 C -0.001 4.001 25 H 0.136 0.864 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.158 0.842 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.090 -15.445 4.905 27.397 hybrid contribution 1.345 0.424 -1.018 1.739 sum -20.745 -15.021 3.887 25.906 Atomic orbital electron populations 1.22054 0.87951 1.06818 1.05859 1.21823 0.92637 0.82683 0.74528 1.90749 1.72253 1.33557 1.52704 1.48419 1.07261 1.07231 1.71634 1.22281 0.98469 0.82148 0.99869 1.21923 0.95511 1.01077 0.98305 1.21556 0.95668 0.94181 1.03426 1.21419 0.94324 0.97210 0.97773 0.92507 1.22086 0.93482 0.88753 1.01816 1.60084 1.03585 1.26790 1.41602 1.21523 0.89357 0.92655 1.02973 1.20989 0.82410 0.91832 0.82542 1.90513 1.60121 1.43889 1.56762 1.41926 1.05662 1.11117 1.62293 1.19689 0.91357 0.88673 1.46782 0.90692 1.26035 0.95648 1.02876 0.96609 1.69669 1.05022 1.31714 1.49633 0.84875 0.77914 0.77137 0.78421 1.20090 1.19426 1.19272 1.21428 0.79688 1.00610 0.98347 0.86411 0.88288 0.88174 0.89776 0.86417 0.92080 0.87531 0.90385 0.90399 0.89855 0.93199 0.84230 0.87678 0.91279 0.76864 0.91204 0.91371 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.12 71.24 0.72 -1.51 16 2 C 0.49 12.73 7.80 87.66 0.68 13.42 16 3 O -0.61 -24.13 16.53 -3.03 -0.05 -24.18 16 4 N -0.61 -12.91 2.97 -818.89 -2.43 -15.34 16 5 C 0.09 0.91 6.36 86.37 0.55 1.46 16 6 C -0.13 -1.10 6.08 30.68 0.19 -0.92 16 7 C -0.11 -1.33 5.17 30.62 0.16 -1.18 16 8 C -0.09 -1.81 2.48 -10.72 -0.03 -1.84 16 9 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 10 C 0.07 1.55 5.08 86.30 0.44 1.99 16 11 N -0.69 -23.30 5.70 -517.93 -2.95 -26.25 16 12 C 0.07 2.41 6.17 85.55 0.53 2.94 16 13 C 0.43 21.94 7.82 87.66 0.69 22.63 16 14 O -0.63 -37.42 15.78 -3.07 -0.05 -37.47 16 15 N -0.57 -30.68 5.29 -306.99 -1.62 -32.31 16 16 C -0.34 -19.90 9.68 84.04 0.81 -19.08 16 17 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 18 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 19 N -0.92 -50.70 13.05 21.66 0.28 -50.42 16 20 Si 0.99 44.43 29.55 68.60 2.03 46.46 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 C 0.12 3.20 5.52 86.36 0.48 3.68 16 25 H 0.12 0.61 5.10 -2.39 -0.01 0.60 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.12 0.48 5.04 -2.38 -0.01 0.47 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.34 12.49 8.43 -89.69 -0.76 11.73 16 37 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.40 19.98 7.90 -92.70 -0.73 19.25 16 40 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.05 2.06 6.82 -2.39 -0.02 2.04 16 Total: -1.00 -82.78 342.57 0.43 -82.34 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.45 Total: 35.77 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 5.68 Total: 21.40 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -6.73 Total: -124.32 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -0.10 Total: -61.64 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -82.78 0.43 -82.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752792204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.732 kcal (2) G-P(sol) polarization free energy of solvation -82.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds