Wall clock time and date at job start Tue Mar 31 2020 02:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21282 * 120.00250 * 2 1 4 4 N 1.34787 * 119.99793 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.62918 * 0.02562 * 4 2 1 6 6 C 1.53187 * 108.77227 * 233.33389 * 5 4 2 7 7 C 1.53038 * 109.31606 * 305.36475 * 6 5 4 8 8 C 1.53041 * 109.53768 * 61.36503 * 7 6 5 9 9 H 1.08994 * 109.49464 * 58.62048 * 8 7 6 10 10 C 1.53004 * 109.49852 * 178.68572 * 8 7 6 11 11 N 1.46892 * 109.46855 * 185.00003 * 10 8 7 12 12 C 1.46904 * 110.99819 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47267 * 179.97438 * 12 11 10 14 14 O 1.21288 * 119.99998 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99981 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99979 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00339 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00219 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00133 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00382 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47178 * 59.99633 * 20 18 16 22 22 H 1.48502 * 109.47361 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46713 * 299.99707 * 20 18 16 24 24 C 1.46924 * 120.63033 * 179.72182 * 4 2 1 25 25 H 1.08997 * 109.47248 * 240.00135 * 1 2 3 26 26 H 1.09004 * 109.46773 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47228 * 119.99592 * 1 2 3 28 28 H 1.09002 * 109.58798 * 353.11768 * 5 4 2 29 29 H 1.08996 * 109.58371 * 113.54749 * 5 4 2 30 30 H 1.08999 * 109.50002 * 65.31872 * 6 5 4 31 31 H 1.09001 * 109.49774 * 185.38216 * 6 5 4 32 32 H 1.09003 * 109.46482 * 181.38835 * 7 6 5 33 33 H 1.09007 * 109.46056 * 301.36333 * 7 6 5 34 34 H 1.08997 * 109.46964 * 305.00077 * 10 8 7 35 35 H 1.09002 * 109.46654 * 65.00132 * 10 8 7 36 36 H 1.00903 * 111.00739 * 303.95263 * 11 10 8 37 37 H 1.08998 * 109.47191 * 300.00063 * 12 11 10 38 38 H 1.09002 * 109.46742 * 60.00220 * 12 11 10 39 39 H 0.96994 * 119.99905 * 0.02562 * 15 13 12 40 40 H 0.96995 * 120.00040 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.58516 * 246.45674 * 24 4 2 42 42 H 1.09002 * 109.58479 * 6.87832 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4602 -2.4477 0.0005 6 6 1.9727 -3.3018 1.1643 7 6 3.4937 -3.4367 1.0619 8 6 4.1380 -2.0519 1.1588 9 1 3.8580 -1.5857 2.1034 10 6 5.6601 -2.1908 1.0891 11 7 6.2818 -0.8770 1.3019 12 6 7.7466 -0.9720 1.2424 13 6 8.3478 0.3920 1.4639 14 8 7.6271 1.3489 1.6533 15 7 9.6865 0.5484 1.4516 16 6 10.2335 1.7892 1.6537 17 1 9.5917 2.6414 1.8224 18 6 11.6135 1.9505 1.6415 19 7 12.3944 0.9136 1.4368 20 14 12.3589 3.6409 1.9176 21 1 11.9499 4.1505 3.2511 22 1 13.8396 3.5449 1.8578 23 1 11.8797 4.5712 0.8639 24 6 3.6500 -1.1835 -0.0056 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 0.3924 -2.2660 0.1231 29 1 1.6389 -2.9675 -0.9407 30 1 1.7127 -2.8237 2.1087 31 1 1.5156 -4.2903 1.1190 32 1 3.8583 -4.0645 1.8749 33 1 3.7544 -3.8921 0.1064 34 1 5.9975 -2.8819 1.8615 35 1 5.9455 -2.5734 0.1092 36 1 5.9357 -0.2011 0.6374 37 1 8.0982 -1.6545 2.0160 38 1 8.0468 -1.3464 0.2637 39 1 10.2628 -0.2168 1.2998 40 1 13.3578 1.0261 1.4287 41 1 4.0069 -1.6005 -0.9474 42 1 4.0271 -0.1677 0.1129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752792205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:32 Heat of formation + Delta-G solvation = -81.328256 kcal Electronic energy + Delta-G solvation = -22227.265845 eV Core-core repulsion = 18820.646067 eV Total energy + Delta-G solvation = -3406.619778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35480 -38.35334 -37.75252 -35.56889 -33.87018 -33.05446 -31.65235 -31.12960 -29.94053 -27.19825 -25.36963 -25.03346 -23.59669 -21.85859 -20.62861 -19.24775 -19.13231 -17.83742 -17.24510 -16.37646 -15.96873 -15.64502 -15.30435 -14.80266 -14.74988 -14.46334 -14.03185 -13.83499 -13.62654 -13.45262 -13.23411 -13.10253 -12.95296 -12.68461 -12.31465 -12.11957 -11.63031 -11.54464 -11.47589 -11.35506 -11.03304 -10.95120 -10.83899 -10.62171 -10.39850 -10.16193 -9.89902 -9.44892 -8.81307 -8.39982 -8.00360 -7.90450 -6.36838 -3.77374 2.50956 2.82196 3.24527 3.29287 3.34520 3.96783 4.10319 4.28508 4.36481 4.48250 4.58138 4.74920 4.78613 4.95124 5.00984 5.08536 5.09551 5.17607 5.26281 5.30229 5.41956 5.47880 5.49263 5.54425 5.59166 5.71630 5.78699 5.82278 5.88911 6.02172 6.05313 6.22077 6.32553 6.35997 7.23880 7.26815 7.60134 7.70301 8.05889 8.11661 8.67090 9.23238 9.59760 10.11930 10.81038 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.003005 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.993989 B = 9316.411467 C =10158.038340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.537 6.537 4 N -0.614 5.614 5 C 0.106 3.894 6 C -0.135 4.135 7 C -0.114 4.114 8 C -0.099 4.099 9 H 0.086 0.914 10 C 0.067 3.933 11 N -0.671 5.671 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.580 6.580 15 N -0.565 5.565 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.904 5.904 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.111 3.889 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.350 0.650 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.063 0.937 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.368 -13.959 -3.873 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.413 6.413 4 N -0.348 5.348 5 C -0.017 4.017 6 C -0.173 4.173 7 C -0.152 4.152 8 C -0.119 4.119 9 H 0.104 0.896 10 C -0.063 4.063 11 N -0.304 5.304 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.464 6.464 15 N -0.202 5.202 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.545 5.545 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.012 4.012 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.341 -12.771 -3.077 25.060 hybrid contribution 1.017 -0.014 -0.889 1.351 sum -20.324 -12.785 -3.967 24.336 Atomic orbital electron populations 1.21935 0.92010 1.05411 1.03830 1.20835 0.90585 0.83172 0.75831 1.90782 1.70597 1.30905 1.49052 1.48133 1.07016 1.05867 1.73827 1.21762 0.96662 0.84261 0.98974 1.21911 0.96539 0.99975 0.98869 1.21543 0.94601 0.96675 1.02406 1.21534 0.94756 0.95664 0.99908 0.89563 1.21953 0.92737 0.92054 0.99604 1.60092 1.04631 1.07435 1.58234 1.21670 0.88478 0.97579 1.00467 1.19836 0.83161 0.89808 0.84625 1.90542 1.60261 1.41315 1.54269 1.41850 1.04682 1.10750 1.62903 1.19670 0.90439 0.87058 1.45648 0.87976 1.25250 0.96058 0.99228 0.97423 1.69605 1.04932 1.30011 1.49998 0.85918 0.77419 0.81711 0.79178 1.19885 1.21009 1.19906 1.21738 0.79000 1.02733 0.97709 0.89496 0.89027 0.89593 0.89673 0.91355 0.91278 0.90623 0.91261 0.91750 0.90690 0.95436 0.83016 0.89597 0.93924 0.77491 0.91881 0.91864 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 8.67 36.00 0.31 -0.92 16 2 C 0.51 6.19 7.81 -10.98 -0.09 6.11 16 3 O -0.54 -9.49 16.50 5.56 0.09 -9.40 16 4 N -0.61 -6.35 2.97 -172.75 -0.51 -6.87 16 5 C 0.11 0.67 6.34 -3.71 -0.02 0.65 16 6 C -0.13 -0.82 6.08 -26.62 -0.16 -0.99 16 7 C -0.11 -0.87 5.17 -26.69 -0.14 -1.01 16 8 C -0.10 -1.08 2.55 -90.48 -0.23 -1.31 16 9 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 10 C 0.07 0.82 5.15 -3.83 -0.02 0.80 16 11 N -0.67 -11.45 6.12 -115.06 -0.70 -12.15 16 12 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 13 C 0.44 10.87 7.82 -10.98 -0.09 10.79 16 14 O -0.58 -16.61 15.78 5.55 0.09 -16.52 16 15 N -0.56 -14.81 5.29 -10.96 -0.06 -14.87 16 16 C -0.30 -8.60 9.68 -14.94 -0.14 -8.75 16 17 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -25.13 13.05 55.50 0.72 -24.40 16 20 Si 0.93 21.65 29.55 -169.99 -5.02 16.62 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.11 1.32 5.35 -3.69 -0.02 1.30 16 25 H 0.09 0.45 7.69 -51.93 -0.40 0.05 16 26 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 27 H 0.09 0.42 7.95 -51.93 -0.41 0.00 16 28 H 0.08 0.35 5.94 -51.93 -0.31 0.04 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.35 6.37 6.82 -39.29 -0.27 6.10 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.39 9.76 7.90 -40.82 -0.32 9.43 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.10 1.55 5.82 -51.93 -0.30 1.25 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -35.40 342.12 -7.56 -42.96 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.60 Total: 11.40 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.72 Total: 8.08 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.55 Total: -58.30 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.18 Total: -25.92 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.40 -7.56 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752792205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.368 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds