Wall clock time and date at job start Tue Mar 31 2020 02:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47212 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.60033 * 305.00145 * 9 8 6 11 11 C 1.53345 * 109.60632 * 184.67923 * 9 8 6 12 12 C 1.53010 * 108.46536 * 172.88593 * 11 9 8 13 13 C 1.50180 * 110.00485 * 48.63034 * 12 11 9 14 14 O 1.21277 * 118.24128 * 162.50456 * 13 12 11 15 15 N 1.33349 * 123.50706 * 342.53252 * 13 12 11 16 16 C 1.45753 * 124.11004 * 2.24188 * 15 13 12 17 17 N 1.46503 * 109.46834 * 119.99503 * 2 1 3 18 18 C 1.36938 * 120.00424 * 275.00132 * 17 2 1 19 19 H 1.08006 * 119.99738 * 0.02562 * 18 17 2 20 20 C 1.38810 * 120.00380 * 179.97438 * 18 17 2 21 21 N 1.31620 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47098 * 89.99882 * 22 20 18 24 24 H 1.48494 * 109.47250 * 210.00385 * 22 20 18 25 25 H 1.48501 * 109.47141 * 330.00224 * 22 20 18 26 26 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 27 27 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 28 28 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 30 30 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 31 31 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 32 32 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 33 33 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 34 34 H 1.09001 * 109.67265 * 292.44320 * 11 9 8 35 35 H 1.08996 * 109.67558 * 52.97437 * 11 9 8 36 36 H 1.09000 * 109.25175 * 288.52559 * 12 11 9 37 37 H 1.08998 * 109.36609 * 168.80727 * 12 11 9 38 38 H 0.97006 * 117.94637 * 182.22071 * 15 13 12 39 39 H 1.09001 * 109.30288 * 220.59234 * 16 15 13 40 40 H 1.09001 * 109.13356 * 101.11030 * 16 15 13 41 41 H 0.97007 * 119.99919 * 95.00541 * 17 2 1 42 42 H 0.97003 * 119.99850 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8843 -3.1393 8 6 5.6750 -1.5368 -2.1303 9 6 6.1851 -2.2581 -3.3794 10 1 5.6850 -3.2219 -3.4749 11 6 7.6993 -2.4731 -3.2672 12 6 8.1525 -3.3484 -4.4375 13 6 7.5925 -2.8152 -5.7249 14 8 8.0985 -3.1793 -6.7653 15 7 6.5690 -1.9626 -5.7853 16 6 5.8983 -1.4066 -4.6168 17 7 2.0182 -0.6905 1.1963 18 6 2.1490 -0.0074 2.3759 19 1 1.8918 1.0405 2.4244 20 6 2.6111 -0.6618 3.5094 21 7 2.9241 -1.9389 3.4504 22 14 2.7888 0.2700 5.1187 23 1 1.5207 0.1788 5.8861 24 1 3.8930 -0.3232 5.9149 25 1 3.0939 1.6952 4.8344 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.7517 -0.1584 -2.1369 30 1 1.6054 -1.7198 -1.2950 31 1 3.9824 -0.4627 -0.4314 32 1 6.1094 -0.5380 -2.0852 33 1 5.9637 -2.0990 -1.2423 34 1 8.2107 -1.5116 -3.3123 35 1 7.9307 -2.9685 -2.3243 36 1 7.7976 -4.3674 -4.2828 37 1 9.2413 -3.3481 -4.4886 38 1 6.2511 -1.6953 -6.6619 39 1 4.8234 -1.3820 -4.7960 40 1 6.2585 -0.3919 -4.4472 41 1 2.2490 -1.6317 1.1528 42 1 3.2474 -2.3961 4.2424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752879926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:56 Heat of formation + Delta-G solvation = -84.425410 kcal Electronic energy + Delta-G solvation = -22323.193254 eV Core-core repulsion = 18916.439173 eV Total energy + Delta-G solvation = -3406.754081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57212 -39.42542 -37.00781 -36.18956 -33.63677 -33.53055 -32.01085 -31.40414 -28.84322 -27.41502 -25.41009 -24.50565 -23.67201 -22.14364 -20.29224 -19.92161 -19.22808 -17.54016 -17.28555 -16.84369 -16.12386 -15.92446 -15.50301 -15.34950 -14.81373 -14.51965 -14.19074 -13.82723 -13.70743 -13.41296 -13.27351 -12.87918 -12.58284 -12.22858 -12.16741 -11.91051 -11.72244 -11.51047 -11.34057 -11.16869 -11.04991 -10.94161 -10.81650 -10.42581 -10.08707 -9.90260 -9.79191 -9.60031 -9.17103 -9.05497 -8.69327 -7.12145 -5.89100 -3.19574 2.51564 2.84056 3.17314 3.34703 3.40607 3.42153 3.46430 4.34867 4.44066 4.47682 4.51552 4.59006 4.96073 5.09950 5.20249 5.27989 5.36684 5.40811 5.41552 5.47130 5.51145 5.57045 5.59822 5.66256 5.86980 5.88814 6.02024 6.07781 6.12065 6.26034 6.49316 6.61896 6.68352 6.77041 6.97327 7.20069 7.58750 7.85492 8.07297 8.28413 8.48086 9.40460 9.94880 10.30507 11.32733 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.003257 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.501818 B = 8594.177578 C = 9470.220135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.115 3.885 5 N -0.711 5.711 6 C 0.508 3.492 7 O -0.556 6.556 8 C -0.136 4.136 9 C -0.087 4.087 10 H 0.090 0.910 11 C -0.122 4.122 12 C -0.134 4.134 13 C 0.518 3.482 14 O -0.568 6.568 15 N -0.716 5.716 16 C 0.107 3.893 17 N -0.724 5.724 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.411 0.589 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.398 0.602 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.385 0.615 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 2.108 -12.285 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.362 5.362 6 C 0.294 3.706 7 O -0.436 6.436 8 C -0.176 4.176 9 C -0.106 4.106 10 H 0.108 0.892 11 C -0.159 4.159 12 C -0.174 4.174 13 C 0.306 3.694 14 O -0.448 6.448 15 N -0.366 5.366 16 C -0.016 4.016 17 N -0.367 5.367 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.247 0.753 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.233 0.767 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.219 0.781 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.761 1.669 -13.097 14.833 hybrid contribution 0.017 0.469 1.245 1.330 sum 6.778 2.138 -11.852 13.820 Atomic orbital electron populations 1.22369 0.98349 1.01284 1.00376 1.20509 0.92675 0.95725 0.86194 0.92902 1.21684 0.79639 1.01094 0.98583 1.46025 1.08314 1.58451 1.23397 1.20568 0.89864 0.77715 0.82447 1.90635 1.70531 1.48651 1.33740 1.21679 0.92878 1.03266 0.99776 1.21184 0.95605 1.00528 0.93266 0.89173 1.21760 0.95036 1.00570 0.98559 1.21615 1.02684 1.01292 0.91827 1.20225 0.79348 0.78234 0.91642 1.90744 1.59547 1.59156 1.35366 1.45490 1.33967 1.46625 1.10564 1.21693 0.99203 0.96028 0.84718 1.42479 1.78091 1.10826 1.05255 1.19217 1.37012 0.93896 0.87350 0.91131 1.24744 1.01961 0.95916 0.98019 1.69661 1.50510 1.08633 1.28977 0.86214 0.77345 0.78780 0.83945 1.21736 1.21780 1.20747 0.92333 0.94200 0.93213 0.91881 0.91866 0.75253 0.88594 0.87784 0.90962 0.89922 0.88119 0.88134 0.76700 0.88253 0.92079 0.78094 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 2 C 0.16 2.79 3.05 -67.93 -0.21 2.59 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 C 0.11 1.78 5.23 -4.04 -0.02 1.76 16 5 N -0.71 -10.31 5.39 -60.29 -0.32 -10.63 16 6 C 0.51 6.86 7.58 -10.99 -0.08 6.78 16 7 O -0.56 -8.96 14.03 5.56 0.08 -8.88 16 8 C -0.14 -1.29 5.18 -27.88 -0.14 -1.44 16 9 C -0.09 -0.80 1.89 -90.49 -0.17 -0.97 16 10 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 11 C -0.12 -0.91 5.33 -26.55 -0.14 -1.05 16 12 C -0.13 -1.17 6.03 -28.13 -0.17 -1.34 16 13 C 0.52 6.15 7.72 -11.87 -0.09 6.06 16 14 O -0.57 -9.00 17.78 5.56 0.10 -8.90 16 15 N -0.72 -7.32 5.45 -61.39 -0.33 -7.65 16 16 C 0.11 1.02 6.11 -4.49 -0.03 0.99 16 17 N -0.72 -16.12 4.56 -53.42 -0.24 -16.36 16 18 C -0.24 -6.14 9.93 -15.06 -0.15 -6.29 16 19 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -26.19 13.06 55.49 0.72 -25.46 16 22 Si 0.91 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.41 6.07 8.14 -40.82 -0.33 5.73 16 32 H 0.10 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.40 3.77 8.80 -40.82 -0.36 3.41 16 39 H 0.10 1.11 6.19 -51.93 -0.32 0.79 16 40 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 41 H 0.39 9.33 7.80 -40.82 -0.32 9.01 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -31.39 344.89 -7.56 -38.95 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -6.78 Total: 13.38 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -0.95 Total: 4.39 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.18 Total: -60.11 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.18 Total: -17.79 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.39 -7.56 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752879926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.478 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds