Wall clock time and date at job start Tue Mar 31 2020 02:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47212 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.60033 * 305.00145 * 9 8 6 11 11 C 1.53345 * 109.60632 * 184.67923 * 9 8 6 12 12 C 1.53010 * 108.46536 * 172.88593 * 11 9 8 13 13 C 1.50180 * 110.00485 * 48.63034 * 12 11 9 14 14 O 1.21277 * 118.24128 * 162.50456 * 13 12 11 15 15 N 1.33349 * 123.50706 * 342.53252 * 13 12 11 16 16 C 1.45753 * 124.11004 * 2.24188 * 15 13 12 17 17 N 1.46503 * 109.46834 * 119.99503 * 2 1 3 18 18 C 1.36938 * 120.00424 * 275.00132 * 17 2 1 19 19 H 1.08006 * 119.99738 * 0.02562 * 18 17 2 20 20 C 1.38810 * 120.00380 * 179.97438 * 18 17 2 21 21 N 1.31620 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47098 * 89.99882 * 22 20 18 24 24 H 1.48494 * 109.47250 * 210.00385 * 22 20 18 25 25 H 1.48501 * 109.47141 * 330.00224 * 22 20 18 26 26 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 27 27 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 28 28 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 30 30 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 31 31 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 32 32 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 33 33 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 34 34 H 1.09001 * 109.67265 * 292.44320 * 11 9 8 35 35 H 1.08996 * 109.67558 * 52.97437 * 11 9 8 36 36 H 1.09000 * 109.25175 * 288.52559 * 12 11 9 37 37 H 1.08998 * 109.36609 * 168.80727 * 12 11 9 38 38 H 0.97006 * 117.94637 * 182.22071 * 15 13 12 39 39 H 1.09001 * 109.30288 * 220.59234 * 16 15 13 40 40 H 1.09001 * 109.13356 * 101.11030 * 16 15 13 41 41 H 0.97007 * 119.99919 * 95.00541 * 17 2 1 42 42 H 0.97003 * 119.99850 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8843 -3.1393 8 6 5.6750 -1.5368 -2.1303 9 6 6.1851 -2.2581 -3.3794 10 1 5.6850 -3.2219 -3.4749 11 6 7.6993 -2.4731 -3.2672 12 6 8.1525 -3.3484 -4.4375 13 6 7.5925 -2.8152 -5.7249 14 8 8.0985 -3.1793 -6.7653 15 7 6.5690 -1.9626 -5.7853 16 6 5.8983 -1.4066 -4.6168 17 7 2.0182 -0.6905 1.1963 18 6 2.1490 -0.0074 2.3759 19 1 1.8918 1.0405 2.4244 20 6 2.6111 -0.6618 3.5094 21 7 2.9241 -1.9389 3.4504 22 14 2.7888 0.2700 5.1187 23 1 1.5207 0.1788 5.8861 24 1 3.8930 -0.3232 5.9149 25 1 3.0939 1.6952 4.8344 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.7517 -0.1584 -2.1369 30 1 1.6054 -1.7198 -1.2950 31 1 3.9824 -0.4627 -0.4314 32 1 6.1094 -0.5380 -2.0852 33 1 5.9637 -2.0990 -1.2423 34 1 8.2107 -1.5116 -3.3123 35 1 7.9307 -2.9685 -2.3243 36 1 7.7976 -4.3674 -4.2828 37 1 9.2413 -3.3481 -4.4886 38 1 6.2511 -1.6953 -6.6619 39 1 4.8234 -1.3820 -4.7960 40 1 6.2585 -0.3919 -4.4472 41 1 2.2490 -1.6317 1.1528 42 1 3.2474 -2.3961 4.2424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752879926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:55 Heat of formation + Delta-G solvation = -107.973299 kcal Electronic energy + Delta-G solvation = -22324.214367 eV Core-core repulsion = 18916.439173 eV Total energy + Delta-G solvation = -3407.775194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46587 -40.51256 -38.15661 -37.43546 -35.10498 -34.38512 -33.56943 -32.27891 -30.54108 -28.41666 -26.55288 -25.61272 -25.15333 -22.99587 -21.67067 -21.05682 -19.99095 -19.31553 -18.20377 -17.94326 -17.09072 -17.03748 -16.79410 -16.37838 -16.14086 -15.69842 -15.40804 -15.05696 -14.83469 -14.44812 -14.27344 -13.97736 -13.78747 -13.60442 -13.49806 -13.07063 -12.94525 -12.77598 -12.48234 -12.46565 -12.19375 -12.14501 -11.92307 -11.74596 -11.67158 -11.60934 -10.97106 -10.83889 -10.64335 -10.07533 -9.87219 -8.99341 -7.89107 -5.17626 1.52072 1.53896 1.60894 1.60928 1.78153 2.35492 2.40956 2.60430 3.45362 3.58260 3.71030 3.76977 3.84851 3.92931 4.03061 4.14048 4.40879 4.43929 4.49242 4.55946 4.67491 4.68571 4.77206 4.81041 4.82747 4.92486 4.97551 5.00801 5.08485 5.20316 5.29152 5.38167 5.48106 5.59611 5.67635 5.79179 6.31962 6.34947 6.72724 7.18601 7.38361 7.39698 8.12211 8.36620 9.33437 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.003257 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.501818 B = 8594.177578 C = 9470.220135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.060 0.940 4 C 0.124 3.876 5 N -0.714 5.714 6 C 0.504 3.496 7 O -0.584 6.584 8 C -0.126 4.126 9 C -0.084 4.084 10 H 0.070 0.930 11 C -0.112 4.112 12 C -0.132 4.132 13 C 0.511 3.489 14 O -0.616 6.616 15 N -0.711 5.711 16 C 0.110 3.890 17 N -0.731 5.731 18 C -0.233 4.233 19 H 0.077 0.923 20 C -0.069 4.069 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.296 1.296 24 H -0.299 1.299 25 H -0.268 1.268 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.411 0.589 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.399 0.601 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.373 0.627 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.518 3.606 -12.099 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.051 3.949 3 H 0.078 0.922 4 C -0.001 4.001 5 N -0.365 5.365 6 C 0.293 3.707 7 O -0.466 6.466 8 C -0.166 4.166 9 C -0.104 4.104 10 H 0.088 0.912 11 C -0.149 4.149 12 C -0.171 4.171 13 C 0.300 3.700 14 O -0.499 6.499 15 N -0.360 5.360 16 C -0.014 4.014 17 N -0.372 5.372 18 C -0.364 4.364 19 H 0.095 0.905 20 C -0.262 4.262 21 N -0.616 5.616 22 Si 0.795 3.205 23 H -0.224 1.224 24 H -0.226 1.226 25 H -0.193 1.193 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.247 0.753 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.234 0.766 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.205 0.795 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.407 3.226 -12.923 15.240 hybrid contribution -0.295 0.046 1.088 1.128 sum 7.113 3.272 -11.835 14.190 Atomic orbital electron populations 1.22261 0.97238 1.01002 1.01256 1.20676 0.93300 0.95734 0.85233 0.92170 1.21493 0.80518 1.00048 0.98016 1.46052 1.07814 1.58862 1.23745 1.21266 0.91483 0.76532 0.81456 1.90632 1.71557 1.49632 1.34754 1.21697 0.89661 1.05079 1.00178 1.21142 0.96878 0.99399 0.92937 0.91197 1.21731 0.93311 1.01244 0.98659 1.21655 1.03289 1.01629 0.90541 1.20830 0.79146 0.77797 0.92192 1.90720 1.61157 1.60886 1.37186 1.45537 1.33369 1.45944 1.11103 1.21710 0.98097 0.97084 0.84468 1.42604 1.78279 1.10328 1.06010 1.19552 1.34599 0.94142 0.88147 0.90516 1.25409 1.03189 0.96670 1.00913 1.69803 1.52597 1.10047 1.29186 0.85273 0.76442 0.78313 0.80480 1.22418 1.22605 1.19276 0.93828 0.90897 0.94102 0.90237 0.93561 0.75272 0.85798 0.86772 0.89527 0.88150 0.87586 0.86938 0.76585 0.90025 0.90023 0.79479 0.94236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 9.49 71.98 0.68 -4.24 16 2 C 0.16 5.34 3.05 44.99 0.14 5.48 16 3 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 4 C 0.12 3.70 5.23 86.38 0.45 4.15 16 5 N -0.71 -19.68 5.39 -463.06 -2.50 -22.17 16 6 C 0.50 12.88 7.58 87.66 0.66 13.55 16 7 O -0.58 -18.42 14.03 -3.03 -0.04 -18.46 16 8 C -0.13 -2.08 5.18 29.85 0.15 -1.92 16 9 C -0.08 -1.38 1.89 -10.71 -0.02 -1.40 16 10 H 0.07 1.46 7.94 -2.39 -0.02 1.44 16 11 C -0.11 -1.33 5.33 30.71 0.16 -1.17 16 12 C -0.13 -2.05 6.03 29.69 0.18 -1.87 16 13 C 0.51 11.78 7.72 87.72 0.68 12.46 16 14 O -0.62 -19.66 17.78 -3.02 -0.05 -19.71 16 15 N -0.71 -13.96 5.45 -467.33 -2.55 -16.51 16 16 C 0.11 1.90 6.11 86.49 0.53 2.43 16 17 N -0.73 -32.06 4.56 -322.94 -1.47 -33.53 16 18 C -0.23 -11.49 9.93 84.03 0.83 -10.66 16 19 H 0.08 3.65 7.83 -2.91 -0.02 3.62 16 20 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 21 N -0.97 -54.75 13.06 21.65 0.28 -54.47 16 22 Si 0.96 42.91 29.55 68.60 2.03 44.94 16 23 H -0.30 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.41 11.47 8.14 -92.71 -0.75 10.72 16 32 H 0.12 1.40 8.11 -2.39 -0.02 1.38 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 0.84 8.13 -2.39 -0.02 0.82 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.40 7.48 8.80 -92.70 -0.82 6.66 16 39 H 0.08 1.76 6.19 -2.39 -0.01 1.75 16 40 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 41 H 0.37 18.12 7.80 -92.70 -0.72 17.40 16 42 H 0.25 13.90 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -67.84 344.89 -0.63 -68.48 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -1.25 Total: 37.81 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 4.92 Total: 13.63 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -6.23 Total: -126.68 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.10 Total: -38.17 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -67.84 -0.63 -68.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752879926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.498 kcal (2) G-P(sol) polarization free energy of solvation -67.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds