Wall clock time and date at job start Tue Mar 31 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47370 * 2 1 4 4 C 1.53004 * 109.47195 * 120.00039 * 2 1 3 5 5 N 1.46499 * 109.47198 * 174.99817 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 H 1.08994 * 109.67905 * 59.99565 * 8 6 5 10 10 C 1.53351 * 109.67258 * 180.49743 * 8 6 5 11 11 C 1.52921 * 108.67409 * 187.26290 * 10 8 6 12 12 N 1.45752 * 110.48831 * 309.24448 * 11 10 8 13 13 C 1.46498 * 117.94935 * 199.07741 * 12 11 10 14 14 C 1.33363 * 124.10732 * 19.09747 * 12 11 10 15 15 O 1.21277 * 118.24517 * 177.77893 * 14 12 11 16 16 C 1.50197 * 123.51644 * 357.77397 * 14 12 11 17 17 N 1.46506 * 109.47091 * 239.99845 * 2 1 3 18 18 C 1.36929 * 119.99909 * 85.00050 * 17 2 1 19 19 H 1.08006 * 120.00094 * 0.02562 * 18 17 2 20 20 C 1.38816 * 120.00176 * 180.02562 * 18 17 2 21 21 N 1.31615 * 119.99668 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47298 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47346 * 120.00091 * 22 20 18 25 25 H 1.48503 * 109.46960 * 239.99923 * 22 20 18 26 26 H 1.08998 * 109.47347 * 59.99643 * 1 2 3 27 27 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47386 * 300.00185 * 1 2 3 29 29 H 1.09009 * 109.46730 * 54.99604 * 4 2 1 30 30 H 1.08998 * 109.46846 * 295.00148 * 4 2 1 31 31 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 32 32 H 1.09000 * 109.59941 * 307.01432 * 10 8 6 33 33 H 1.09002 * 109.60311 * 67.34073 * 10 8 6 34 34 H 1.08993 * 109.29945 * 69.55866 * 11 10 8 35 35 H 1.09001 * 109.30149 * 189.14044 * 11 10 8 36 36 H 1.09001 * 109.47142 * 89.99478 * 13 12 11 37 37 H 1.08994 * 109.47399 * 210.00255 * 13 12 11 38 38 H 1.09007 * 109.46909 * 330.00025 * 13 12 11 39 39 H 1.09008 * 109.38715 * 257.43610 * 16 14 12 40 40 H 1.08995 * 109.42481 * 137.68640 * 16 14 12 41 41 H 0.97002 * 119.99781 * 265.00262 * 17 2 1 42 42 H 0.96996 * 119.99816 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1725 -1.4338 2.1883 7 8 3.5693 -1.8887 3.1371 8 6 5.6738 -1.5474 2.1249 9 1 6.1157 -0.5520 2.0805 10 6 6.1886 -2.2858 3.3665 11 6 7.7167 -2.2296 3.3711 12 7 8.2471 -2.6630 2.0846 13 6 9.6496 -3.0821 2.0261 14 6 7.5357 -2.7017 0.9572 15 8 8.0957 -3.0418 -0.0634 16 6 6.0782 -2.3466 0.8836 17 7 2.0183 -0.6907 -1.1962 18 6 2.1491 -0.0076 -2.3757 19 1 1.8926 1.0405 -2.4241 20 6 2.6113 -0.6621 -3.5093 21 7 2.9233 -1.9394 -3.4504 22 14 2.7903 0.2700 -5.1182 23 1 2.3764 1.6824 -4.9208 24 1 4.2072 0.2261 -5.5607 25 1 1.9291 -0.3578 -6.1524 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6052 -1.7199 1.2952 30 1 1.7516 -0.1583 2.1370 31 1 3.9823 -0.4629 0.4315 32 1 5.8022 -1.8041 4.2647 33 1 5.8584 -3.3242 3.3375 34 1 8.0390 -1.2071 3.5677 35 1 8.0990 -2.8846 4.1541 36 1 9.7175 -4.1523 2.2218 37 1 10.0520 -2.8675 1.0362 38 1 10.2229 -2.5384 2.7771 39 1 5.4854 -3.2599 0.8320 40 1 5.8958 -1.7471 -0.0083 41 1 2.2490 -1.6319 -1.1526 42 1 3.2466 -2.3966 -4.2424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752882194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:28 Heat of formation + Delta-G solvation = -92.853151 kcal Electronic energy + Delta-G solvation = -22924.332940 eV Core-core repulsion = 19517.213404 eV Total energy + Delta-G solvation = -3407.119535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81537 -40.51661 -38.03491 -37.33017 -35.27082 -35.03180 -33.53393 -30.85471 -30.47905 -28.64119 -27.07425 -25.74803 -25.42082 -23.69263 -21.70597 -21.08670 -19.73251 -19.35439 -18.28237 -17.68590 -17.29441 -17.04182 -16.81258 -16.53629 -16.14895 -15.63750 -15.26566 -15.24986 -14.84950 -14.50397 -14.30615 -13.87435 -13.68926 -13.58823 -13.35136 -13.25116 -13.07735 -12.82847 -12.76517 -12.61363 -12.48556 -12.13533 -12.04673 -12.00170 -11.69100 -11.62685 -11.33141 -10.98646 -10.57541 -9.98695 -9.75139 -9.01346 -7.91427 -5.19782 1.48716 1.49962 1.50125 1.58766 1.61085 2.00831 2.27458 2.57985 3.41084 3.44825 3.59968 3.68089 3.71164 3.91493 4.00749 4.19148 4.20245 4.36746 4.42817 4.46920 4.60595 4.63511 4.66401 4.75005 4.76291 4.80449 4.91146 4.96477 5.00794 5.08003 5.21543 5.28200 5.41251 5.43814 5.57952 5.62102 6.29414 6.36052 6.60025 7.06141 7.24033 7.37337 8.10541 8.33992 9.31320 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.004916 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.381964 B = 5694.421742 C = 7309.561432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.061 0.939 4 C 0.123 3.877 5 N -0.712 5.712 6 C 0.517 3.483 7 O -0.577 6.577 8 C -0.099 4.099 9 H 0.127 0.873 10 C -0.111 4.111 11 C 0.114 3.886 12 N -0.604 5.604 13 C 0.073 3.927 14 C 0.516 3.484 15 O -0.600 6.600 16 C -0.120 4.120 17 N -0.732 5.732 18 C -0.231 4.231 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.966 5.966 22 Si 0.962 3.038 23 H -0.264 1.264 24 H -0.299 1.299 25 H -0.300 1.300 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.409 0.591 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.372 0.628 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 2.961 18.024 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.079 0.921 4 C -0.002 4.002 5 N -0.362 5.362 6 C 0.304 3.696 7 O -0.457 6.457 8 C -0.120 4.120 9 H 0.145 0.855 10 C -0.149 4.149 11 C -0.007 4.007 12 N -0.336 5.336 13 C -0.069 4.069 14 C 0.305 3.695 15 O -0.482 6.482 16 C -0.160 4.160 17 N -0.373 5.373 18 C -0.363 4.363 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.617 5.617 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.227 1.227 25 H -0.228 1.228 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.245 0.755 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.204 0.796 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.008 2.660 18.088 20.381 hybrid contribution 0.051 -0.179 -1.907 1.916 sum 9.058 2.481 16.180 18.709 Atomic orbital electron populations 1.22241 0.96915 1.01083 1.01355 1.20702 0.93529 0.95716 0.85097 0.92142 1.21577 0.79914 1.00377 0.98324 1.46072 1.08174 1.58405 1.23572 1.20771 0.90310 0.76791 0.81695 1.90656 1.70956 1.49458 1.34662 1.21431 0.91319 1.02810 0.96435 0.85493 1.21712 0.94484 1.01333 0.97362 1.21748 0.92920 1.02525 0.83518 1.47411 1.12675 1.64482 1.09035 1.21846 0.80649 1.00776 1.03648 1.20145 0.89366 0.76939 0.83027 1.90714 1.71473 1.50657 1.35348 1.21525 0.92247 1.02579 0.99649 1.42618 1.78297 1.10306 1.06075 1.19594 1.34504 0.94150 0.88068 0.90313 1.25416 1.03208 0.96611 1.01003 1.69806 1.52621 1.10132 1.29118 0.85229 0.76439 0.78441 0.80581 1.18805 1.22653 1.22799 0.93794 0.94026 0.90707 0.93218 0.89729 0.75463 0.87437 0.91574 0.88710 0.87292 0.92086 0.92492 0.87497 0.88919 0.88572 0.79561 0.94358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.49 71.98 0.68 -4.31 16 2 C 0.16 5.53 3.05 44.99 0.14 5.67 16 3 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 4 C 0.12 3.83 5.23 86.38 0.45 4.28 16 5 N -0.71 -21.57 5.30 -463.05 -2.45 -24.02 16 6 C 0.52 14.78 7.13 87.66 0.63 15.41 16 7 O -0.58 -19.47 15.90 -3.04 -0.05 -19.52 16 8 C -0.10 -2.15 2.60 -11.40 -0.03 -2.17 16 9 H 0.13 2.19 8.13 -2.39 -0.02 2.17 16 10 C -0.11 -1.87 4.71 30.69 0.14 -1.73 16 11 C 0.11 1.37 6.32 86.49 0.55 1.92 16 12 N -0.60 -12.10 3.21 -851.59 -2.73 -14.83 16 13 C 0.07 1.20 10.24 127.77 1.31 2.51 16 14 C 0.52 15.04 7.47 87.72 0.66 15.70 16 15 O -0.60 -23.37 16.18 -3.02 -0.05 -23.41 16 16 C -0.12 -3.32 5.20 29.71 0.15 -3.17 16 17 N -0.73 -33.57 4.56 -322.94 -1.47 -35.04 16 18 C -0.23 -11.93 9.93 84.04 0.83 -11.09 16 19 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 20 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 21 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 22 Si 0.96 45.29 29.55 68.60 2.03 47.31 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.41 12.91 7.86 -92.71 -0.73 12.19 16 32 H 0.11 1.62 7.89 -2.39 -0.02 1.60 16 33 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.78 8.10 -2.39 -0.02 0.76 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.25 7.13 -2.39 -0.02 1.23 16 38 H 0.11 0.94 8.02 -2.38 -0.02 0.92 16 39 H 0.09 2.81 8.09 -2.38 -0.02 2.79 16 40 H 0.10 3.01 7.94 -2.39 -0.02 2.99 16 41 H 0.37 18.95 7.80 -92.71 -0.72 18.23 16 42 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -72.38 346.26 1.10 -71.28 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.43 Total: 36.24 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 5.98 Total: 19.62 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -6.38 Total: -131.52 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.10 Total: -42.93 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.38 1.10 -71.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752882194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.572 kcal (2) G-P(sol) polarization free energy of solvation -72.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds