Wall clock time and date at job start Tue Mar 31 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47332 * 2 1 4 4 C 1.53006 * 109.46926 * 239.99690 * 2 1 3 5 5 N 1.46494 * 109.46940 * 184.99928 * 4 2 1 6 6 C 1.34783 * 120.00156 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99572 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00024 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.67274 * 60.49757 * 8 6 5 10 10 C 1.53349 * 109.70147 * 181.01258 * 8 6 5 11 11 C 1.52737 * 108.81878 * 187.12096 * 10 8 6 12 12 N 1.45750 * 110.59037 * 309.60823 * 11 10 8 13 13 C 1.46499 * 117.95088 * 198.89408 * 12 11 10 14 14 C 1.33355 * 124.10424 * 18.61475 * 12 11 10 15 15 O 1.21281 * 118.25052 * 178.07416 * 14 12 11 16 16 C 1.50179 * 123.50917 * 358.05613 * 14 12 11 17 17 N 1.46497 * 109.47099 * 120.00105 * 2 1 3 18 18 C 1.36938 * 119.99921 * 275.00021 * 17 2 1 19 19 H 1.07997 * 119.99726 * 359.97438 * 18 17 2 20 20 C 1.38811 * 120.00051 * 180.02562 * 18 17 2 21 21 N 1.31620 * 120.00117 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00172 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47275 * 90.00032 * 22 20 18 24 24 H 1.48499 * 109.47287 * 209.99864 * 22 20 18 25 25 H 1.48499 * 109.47028 * 330.00384 * 22 20 18 26 26 H 1.09001 * 109.47186 * 60.00398 * 1 2 3 27 27 H 1.08998 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47037 * 299.99968 * 1 2 3 29 29 H 1.09003 * 109.47027 * 65.00326 * 4 2 1 30 30 H 1.08991 * 109.47304 * 305.00404 * 4 2 1 31 31 H 0.97003 * 120.00132 * 0.02562 * 5 4 2 32 32 H 1.08997 * 109.60315 * 307.04062 * 10 8 6 33 33 H 1.09005 * 109.60311 * 67.35800 * 10 8 6 34 34 H 1.09004 * 109.39480 * 189.17262 * 11 10 8 35 35 H 1.08999 * 109.10578 * 69.86066 * 11 10 8 36 36 H 1.09002 * 109.47391 * 179.73884 * 13 12 11 37 37 H 1.09001 * 109.46813 * 59.73940 * 13 12 11 38 38 H 1.09004 * 109.47041 * 299.74067 * 13 12 11 39 39 H 1.09006 * 109.40161 * 137.70758 * 16 14 12 40 40 H 1.08997 * 109.40126 * 257.45483 * 16 14 12 41 41 H 0.97001 * 120.00204 * 94.99678 * 17 2 1 42 42 H 0.96994 * 120.00466 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.1731 -1.4284 -2.1912 7 8 3.5699 -1.8835 -3.1399 8 6 5.6749 -1.5370 -2.1305 9 1 5.9662 -2.1077 -1.2488 10 6 6.1941 -2.2363 -3.3928 11 6 7.6908 -2.4953 -3.2323 12 7 8.3806 -1.2782 -2.8233 13 6 9.8301 -1.2099 -3.0245 14 6 7.7743 -0.2209 -2.2824 15 8 8.4574 0.7239 -1.9482 16 6 6.2906 -0.1372 -2.0651 17 7 2.0184 -0.6906 1.1961 18 6 2.1491 -0.0075 2.3757 19 1 1.8927 1.0405 2.4241 20 6 2.6123 -0.6617 3.5090 21 7 2.7385 -0.0050 4.6427 22 14 3.0566 -2.4742 3.4252 23 1 4.4892 -2.6164 3.0607 24 1 2.8177 -3.1041 4.7485 25 1 2.2163 -3.1429 2.3995 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -0.1584 -2.1370 30 1 1.6054 -1.7198 -1.2952 31 1 3.9824 -0.4628 -0.4316 32 1 5.6705 -3.1826 -3.5281 33 1 6.0255 -1.5979 -4.2601 34 1 8.1020 -2.8411 -4.1807 35 1 7.8404 -3.2657 -2.4759 36 1 10.2001 -0.2452 -2.6774 37 1 10.0556 -1.3254 -4.0847 38 1 10.3131 -2.0084 -2.4612 39 1 6.0921 0.3003 -1.0866 40 1 5.8464 0.4903 -2.8377 41 1 2.2490 -1.6318 1.1526 42 1 3.0618 -0.4622 5.4346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752882196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:34 Heat of formation + Delta-G solvation = -64.980223 kcal Electronic energy + Delta-G solvation = -22884.627002 eV Core-core repulsion = 19478.716127 eV Total energy + Delta-G solvation = -3405.910875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92211 -39.46373 -36.83596 -36.30190 -34.31420 -33.66974 -31.93260 -30.03193 -29.41012 -27.79942 -25.98422 -24.74948 -23.48999 -22.73646 -20.37774 -19.99933 -18.92865 -17.97942 -17.17299 -16.84766 -16.45936 -15.95932 -15.59600 -15.43210 -14.89649 -14.49914 -14.19134 -13.84207 -13.64574 -13.53426 -12.96333 -12.86775 -12.60827 -12.49740 -12.32433 -12.17458 -12.02775 -11.85993 -11.67315 -11.24767 -11.23107 -10.99840 -10.86895 -10.46028 -10.27290 -10.13413 -9.67677 -9.53775 -9.06062 -8.99403 -8.85620 -7.40531 -5.85852 -3.23286 2.44081 2.66037 2.76762 3.26808 3.30204 3.32702 3.39011 4.24772 4.34272 4.48516 4.49955 4.50136 4.95087 4.98805 5.00754 5.14574 5.15449 5.23917 5.25447 5.33515 5.43792 5.44648 5.54373 5.64310 5.70247 5.72374 5.88735 5.92839 6.04354 6.10303 6.14349 6.34175 6.60015 6.65668 6.90082 7.17383 7.69112 7.89304 7.94389 8.31311 8.32952 9.10027 9.82106 10.00943 11.32092 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.004676 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.812206 B = 5987.046758 C = 6789.785841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.164 3.836 3 H 0.063 0.937 4 C 0.111 3.889 5 N -0.714 5.714 6 C 0.517 3.483 7 O -0.548 6.548 8 C -0.114 4.114 9 H 0.107 0.893 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.610 5.610 13 C 0.069 3.931 14 C 0.522 3.478 15 O -0.550 6.550 16 C -0.126 4.126 17 N -0.748 5.748 18 C -0.249 4.249 19 H 0.092 0.908 20 C 0.009 3.991 21 N -0.930 5.930 22 Si 0.881 3.119 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.411 0.589 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.362 0.638 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.766 -5.224 -17.494 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.055 3.945 3 H 0.081 0.919 4 C -0.013 4.013 5 N -0.366 5.366 6 C 0.302 3.698 7 O -0.426 6.426 8 C -0.135 4.135 9 H 0.125 0.875 10 C -0.153 4.153 11 C -0.009 4.009 12 N -0.343 5.343 13 C -0.074 4.074 14 C 0.311 3.689 15 O -0.429 6.429 16 C -0.166 4.166 17 N -0.392 5.392 18 C -0.378 4.378 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.577 5.577 22 Si 0.711 3.289 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.195 0.805 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.661 -4.864 -17.782 20.369 hybrid contribution 0.415 -1.325 0.573 1.502 sum 9.075 -6.188 -17.209 20.416 Atomic orbital electron populations 1.22335 0.97777 1.01289 1.00957 1.20491 0.92893 0.96087 0.85067 0.91879 1.21770 0.79324 1.01208 0.99032 1.46077 1.08456 1.58599 1.23429 1.20298 0.89083 0.77923 0.82492 1.90679 1.70130 1.48275 1.33562 1.21466 0.92889 0.97685 1.01502 0.87525 1.21671 0.93462 1.03053 0.97070 1.21425 0.92543 0.86157 1.00802 1.47223 1.08912 1.16281 1.61905 1.21774 0.80102 1.04390 1.01095 1.20016 0.90508 0.81873 0.76541 1.90721 1.64947 1.36259 1.50934 1.21670 0.91367 0.97200 1.06341 1.42847 1.79774 1.09439 1.07157 1.19056 1.37471 0.95557 0.85734 0.89039 1.24661 1.01259 0.97266 0.95523 1.69689 1.52135 1.35601 1.00282 0.86621 0.78386 0.86923 0.76988 1.21057 1.21692 1.20376 0.93834 0.93334 0.91818 0.91303 0.91795 0.75267 0.88536 0.90243 0.90152 0.91335 0.88970 0.92239 0.92162 0.86992 0.87572 0.80549 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.49 37.16 0.35 -2.27 16 2 C 0.16 2.83 3.05 -67.93 -0.21 2.62 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C 0.11 1.67 5.23 -4.04 -0.02 1.65 16 5 N -0.71 -10.24 5.30 -60.30 -0.32 -10.56 16 6 C 0.52 7.08 7.14 -10.98 -0.08 7.00 16 7 O -0.55 -8.99 15.90 5.56 0.09 -8.90 16 8 C -0.11 -1.21 2.61 -91.56 -0.24 -1.45 16 9 H 0.11 1.08 8.13 -51.93 -0.42 0.66 16 10 C -0.11 -1.02 4.70 -26.69 -0.13 -1.14 16 11 C 0.11 0.84 6.40 -4.58 -0.03 0.81 16 12 N -0.61 -6.07 3.21 -182.97 -0.59 -6.65 16 13 C 0.07 0.58 10.48 59.85 0.63 1.21 16 14 C 0.52 6.59 7.47 -11.87 -0.09 6.50 16 15 O -0.55 -8.99 15.95 5.56 0.09 -8.91 16 16 C -0.13 -1.39 5.19 -28.10 -0.15 -1.54 16 17 N -0.75 -16.02 4.36 -53.42 -0.23 -16.26 16 18 C -0.25 -6.51 10.41 -15.06 -0.16 -6.67 16 19 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -28.15 13.97 55.49 0.78 -27.38 16 22 Si 0.88 21.13 27.74 -169.99 -4.71 16.42 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.41 5.98 7.83 -40.82 -0.32 5.66 16 32 H 0.10 0.86 7.89 -51.93 -0.41 0.45 16 33 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.96 6.59 -51.93 -0.34 0.61 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.11 1.27 7.92 -51.93 -0.41 0.86 16 40 H 0.11 1.11 8.09 -51.93 -0.42 0.69 16 41 H 0.36 7.79 5.66 -40.82 -0.23 7.56 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -33.28 342.73 -6.74 -40.01 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.79 Total: 10.17 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.21 Total: 6.88 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.36 Total: -60.84 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.18 Total: -17.80 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.42 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.28 -6.74 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752882196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.967 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds