Wall clock time and date at job start Tue Mar 31 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47332 * 2 1 4 4 C 1.53006 * 109.46926 * 239.99690 * 2 1 3 5 5 N 1.46494 * 109.46940 * 184.99928 * 4 2 1 6 6 C 1.34783 * 120.00156 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99572 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00024 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.67274 * 60.49757 * 8 6 5 10 10 C 1.53349 * 109.70147 * 181.01258 * 8 6 5 11 11 C 1.52737 * 108.81878 * 187.12096 * 10 8 6 12 12 N 1.45750 * 110.59037 * 309.60823 * 11 10 8 13 13 C 1.46499 * 117.95088 * 198.89408 * 12 11 10 14 14 C 1.33355 * 124.10424 * 18.61475 * 12 11 10 15 15 O 1.21281 * 118.25052 * 178.07416 * 14 12 11 16 16 C 1.50179 * 123.50917 * 358.05613 * 14 12 11 17 17 N 1.46497 * 109.47099 * 120.00105 * 2 1 3 18 18 C 1.36938 * 119.99921 * 275.00021 * 17 2 1 19 19 H 1.07997 * 119.99726 * 359.97438 * 18 17 2 20 20 C 1.38811 * 120.00051 * 180.02562 * 18 17 2 21 21 N 1.31620 * 120.00117 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00172 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47275 * 90.00032 * 22 20 18 24 24 H 1.48499 * 109.47287 * 209.99864 * 22 20 18 25 25 H 1.48499 * 109.47028 * 330.00384 * 22 20 18 26 26 H 1.09001 * 109.47186 * 60.00398 * 1 2 3 27 27 H 1.08998 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47037 * 299.99968 * 1 2 3 29 29 H 1.09003 * 109.47027 * 65.00326 * 4 2 1 30 30 H 1.08991 * 109.47304 * 305.00404 * 4 2 1 31 31 H 0.97003 * 120.00132 * 0.02562 * 5 4 2 32 32 H 1.08997 * 109.60315 * 307.04062 * 10 8 6 33 33 H 1.09005 * 109.60311 * 67.35800 * 10 8 6 34 34 H 1.09004 * 109.39480 * 189.17262 * 11 10 8 35 35 H 1.08999 * 109.10578 * 69.86066 * 11 10 8 36 36 H 1.09002 * 109.47391 * 179.73884 * 13 12 11 37 37 H 1.09001 * 109.46813 * 59.73940 * 13 12 11 38 38 H 1.09004 * 109.47041 * 299.74067 * 13 12 11 39 39 H 1.09006 * 109.40161 * 137.70758 * 16 14 12 40 40 H 1.08997 * 109.40126 * 257.45483 * 16 14 12 41 41 H 0.97001 * 120.00204 * 94.99678 * 17 2 1 42 42 H 0.96994 * 120.00466 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.1731 -1.4284 -2.1912 7 8 3.5699 -1.8835 -3.1399 8 6 5.6749 -1.5370 -2.1305 9 1 5.9662 -2.1077 -1.2488 10 6 6.1941 -2.2363 -3.3928 11 6 7.6908 -2.4953 -3.2323 12 7 8.3806 -1.2782 -2.8233 13 6 9.8301 -1.2099 -3.0245 14 6 7.7743 -0.2209 -2.2824 15 8 8.4574 0.7239 -1.9482 16 6 6.2906 -0.1372 -2.0651 17 7 2.0184 -0.6906 1.1961 18 6 2.1491 -0.0075 2.3757 19 1 1.8927 1.0405 2.4241 20 6 2.6123 -0.6617 3.5090 21 7 2.7385 -0.0050 4.6427 22 14 3.0566 -2.4742 3.4252 23 1 4.4892 -2.6164 3.0607 24 1 2.8177 -3.1041 4.7485 25 1 2.2163 -3.1429 2.3995 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -0.1584 -2.1370 30 1 1.6054 -1.7198 -1.2952 31 1 3.9824 -0.4628 -0.4316 32 1 5.6705 -3.1826 -3.5281 33 1 6.0255 -1.5979 -4.2601 34 1 8.1020 -2.8411 -4.1807 35 1 7.8404 -3.2657 -2.4759 36 1 10.2001 -0.2452 -2.6774 37 1 10.0556 -1.3254 -4.0847 38 1 10.3131 -2.0084 -2.4612 39 1 6.0921 0.3003 -1.0866 40 1 5.8464 0.4903 -2.8377 41 1 2.2490 -1.6318 1.1526 42 1 3.0618 -0.4622 5.4346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752882196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:34 Heat of formation + Delta-G solvation = -89.500614 kcal Electronic energy + Delta-G solvation = -22885.690285 eV Core-core repulsion = 19478.716127 eV Total energy + Delta-G solvation = -3406.974158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84263 -40.55883 -38.17546 -37.36138 -35.31763 -35.05605 -33.67948 -31.26361 -30.72266 -28.67197 -27.09394 -25.64309 -25.25594 -23.68972 -21.80443 -21.16466 -19.85476 -19.70127 -18.30502 -17.74924 -17.34993 -16.97347 -16.94872 -16.62524 -16.16476 -15.76493 -15.29854 -15.10788 -14.81686 -14.59354 -14.40957 -14.20918 -13.78919 -13.62567 -13.41618 -13.26968 -13.20121 -12.86364 -12.77930 -12.67508 -12.47539 -12.13360 -12.03645 -12.00153 -11.79768 -11.68074 -11.34393 -11.01459 -10.59630 -10.04066 -9.76545 -9.34062 -7.99782 -5.33776 1.38461 1.41048 1.48385 1.48971 1.58864 2.00262 2.21272 2.49381 3.31971 3.38419 3.54471 3.57962 3.67145 3.70497 3.93553 4.17892 4.19945 4.34869 4.35957 4.46822 4.59651 4.61246 4.64002 4.70343 4.73884 4.77391 4.87822 4.97428 4.99237 5.01594 5.18668 5.24986 5.38203 5.39602 5.57914 5.81597 6.23313 6.34770 6.55003 7.04324 7.09646 7.19942 7.84167 8.03118 9.21603 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.004676 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.812206 B = 5987.046758 C = 6789.785841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.058 0.942 4 C 0.121 3.879 5 N -0.718 5.718 6 C 0.520 3.480 7 O -0.572 6.572 8 C -0.106 4.106 9 H 0.116 0.884 10 C -0.110 4.110 11 C 0.113 3.887 12 N -0.605 5.605 13 C 0.065 3.935 14 C 0.516 3.484 15 O -0.598 6.598 16 C -0.120 4.120 17 N -0.747 5.747 18 C -0.224 4.224 19 H 0.060 0.940 20 C -0.059 4.059 21 N -0.983 5.983 22 Si 0.948 3.052 23 H -0.274 1.274 24 H -0.303 1.303 25 H -0.257 1.257 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.410 0.590 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.364 0.636 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 -7.447 -19.810 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.076 0.924 4 C -0.004 4.004 5 N -0.369 5.369 6 C 0.307 3.693 7 O -0.452 6.452 8 C -0.127 4.127 9 H 0.134 0.866 10 C -0.148 4.148 11 C -0.008 4.008 12 N -0.337 5.337 13 C -0.077 4.077 14 C 0.305 3.695 15 O -0.480 6.480 16 C -0.160 4.160 17 N -0.392 5.392 18 C -0.355 4.355 19 H 0.078 0.922 20 C -0.250 4.250 21 N -0.634 5.634 22 Si 0.776 3.224 23 H -0.199 1.199 24 H -0.230 1.230 25 H -0.182 1.182 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.246 0.754 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.198 0.802 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.102 -7.126 -20.183 23.259 hybrid contribution 0.225 -0.560 1.197 1.341 sum 9.327 -7.686 -18.986 22.506 Atomic orbital electron populations 1.22225 0.96458 1.01645 1.01395 1.20666 0.93721 0.95786 0.84461 0.92351 1.21619 0.79796 1.00923 0.98017 1.46129 1.08244 1.58794 1.23697 1.20707 0.90122 0.76885 0.81606 1.90670 1.70927 1.49277 1.34363 1.21459 0.90559 0.97656 1.03066 0.86567 1.21659 0.94517 1.02867 0.95741 1.21631 0.91275 0.85125 1.02783 1.47377 1.09746 1.16217 1.60381 1.21903 0.79165 1.03714 1.02895 1.20224 0.90810 0.82019 0.76452 1.90702 1.65880 1.38160 1.53308 1.21589 0.90735 0.97613 1.06102 1.42796 1.79981 1.09470 1.06918 1.18986 1.34817 0.94405 0.87258 0.92187 1.25399 1.02533 1.01899 0.95214 1.69872 1.54697 1.37614 1.01209 0.85527 0.78805 0.81392 0.76705 1.19946 1.23043 1.18152 0.90570 0.92999 0.94232 0.89678 0.91927 0.75396 0.88034 0.90691 0.87293 0.89730 0.91477 0.89810 0.90284 0.87713 0.87227 0.80222 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.49 71.98 0.68 -4.09 16 2 C 0.16 5.32 3.05 45.00 0.14 5.46 16 3 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 4 C 0.12 3.35 5.23 86.38 0.45 3.80 16 5 N -0.72 -19.20 5.30 -463.06 -2.45 -21.65 16 6 C 0.52 13.13 7.14 87.66 0.63 13.75 16 7 O -0.57 -17.43 15.90 -3.04 -0.05 -17.48 16 8 C -0.11 -2.03 2.61 -11.40 -0.03 -2.06 16 9 H 0.12 2.05 8.13 -2.39 -0.02 2.03 16 10 C -0.11 -1.63 4.70 30.62 0.14 -1.49 16 11 C 0.11 1.26 6.40 86.43 0.55 1.82 16 12 N -0.61 -10.69 3.21 -851.96 -2.74 -13.43 16 13 C 0.07 0.96 10.48 127.77 1.34 2.30 16 14 C 0.52 12.60 7.47 87.71 0.66 13.26 16 15 O -0.60 -19.83 15.95 -3.03 -0.05 -19.88 16 16 C -0.12 -2.54 5.19 29.71 0.15 -2.39 16 17 N -0.75 -31.14 4.36 -322.93 -1.41 -32.55 16 18 C -0.22 -11.81 10.41 84.03 0.87 -10.93 16 19 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 20 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 21 N -0.98 -61.14 13.97 21.65 0.30 -60.84 16 22 Si 0.95 43.41 27.74 68.60 1.90 45.32 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.26 -10.72 6.52 99.48 0.65 -10.07 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.41 11.34 7.83 -92.71 -0.73 10.62 16 32 H 0.10 1.47 7.89 -2.39 -0.02 1.45 16 33 H 0.07 1.20 8.13 -2.38 -0.02 1.18 16 34 H 0.11 0.68 8.10 -2.38 -0.02 0.67 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 1.36 6.59 -2.39 -0.02 1.35 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.10 2.35 7.92 -2.38 -0.02 2.33 16 40 H 0.11 2.21 8.09 -2.39 -0.02 2.19 16 41 H 0.36 14.88 5.66 -92.71 -0.52 14.36 16 42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -73.17 342.73 1.28 -71.89 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.29 Total: 32.02 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 6.05 Total: 16.59 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -6.29 Total: -128.46 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.10 Total: -37.36 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.90 Total: 45.32 kcal Total: -73.17 1.28 -71.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752882196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.612 kcal (2) G-P(sol) polarization free energy of solvation -73.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds