Wall clock time and date at job start Tue Mar 31 2020 02:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 N 1.46500 * 109.47226 * 184.99495 * 4 2 1 6 6 C 1.34776 * 119.99923 * 180.02562 * 5 4 2 7 7 O 1.21272 * 120.00513 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99846 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.29726 * 320.41877 * 8 6 5 10 10 C 1.52924 * 109.30122 * 79.99898 * 8 6 5 11 11 C 1.53342 * 108.67547 * 171.06485 * 10 8 6 12 12 C 1.53071 * 108.42567 * 292.46897 * 11 10 8 13 13 C 1.50184 * 109.88867 * 48.90352 * 12 11 10 14 14 O 1.21277 * 118.24372 * 162.39995 * 13 12 11 15 15 N 1.33352 * 123.50451 * 342.41111 * 13 12 11 16 16 C 1.46508 * 117.94118 * 182.22452 * 15 13 12 17 17 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 18 18 C 1.36943 * 119.99752 * 274.72222 * 17 2 1 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 2 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 2 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 27 27 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47415 * 304.99804 * 4 2 1 30 30 H 1.09008 * 109.47087 * 65.00143 * 4 2 1 31 31 H 0.96998 * 120.00120 * 0.02562 * 5 4 2 32 32 H 1.08997 * 109.60427 * 290.82690 * 10 8 6 33 33 H 1.09003 * 109.60185 * 51.31149 * 10 8 6 34 34 H 1.08999 * 109.67759 * 52.20535 * 11 10 8 35 35 H 1.09000 * 109.67698 * 172.73899 * 11 10 8 36 36 H 1.08996 * 109.39770 * 169.02555 * 12 11 10 37 37 H 1.08997 * 109.40246 * 288.77413 * 12 11 10 38 38 H 1.08995 * 109.47294 * 270.00338 * 16 15 13 39 39 H 1.09003 * 109.46982 * 30.00837 * 16 15 13 40 40 H 1.09005 * 109.46594 * 150.00468 * 16 15 13 41 41 H 0.97001 * 120.00384 * 95.00578 * 17 2 1 42 42 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1730 -1.4282 -2.1912 7 8 3.5701 -1.8825 -3.1403 8 6 5.6749 -1.5368 -2.1307 9 1 6.0870 -0.6116 -1.7277 10 6 6.0611 -2.7016 -1.2182 11 6 7.5706 -2.9421 -1.3411 12 6 7.8645 -3.4618 -2.7506 13 6 7.1903 -2.5873 -3.7685 14 8 7.5692 -2.6486 -4.9189 15 7 6.1974 -1.7469 -3.4749 16 6 5.5939 -0.9871 -4.5726 17 7 2.0183 -0.6906 1.1962 18 6 2.1544 -0.0060 2.3744 19 1 1.8976 1.0419 2.4228 20 6 2.6226 -0.6590 3.5063 21 7 2.9361 -1.9360 3.4471 22 14 2.8076 0.2746 5.1136 23 1 1.5434 0.1835 5.8875 24 1 3.9161 -0.3171 5.9050 25 1 3.1105 1.6997 4.8263 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -1.7198 -1.2951 30 1 1.7516 -0.1583 -2.1370 31 1 3.9824 -0.4627 -0.4317 32 1 5.8128 -2.4554 -0.1859 33 1 5.5220 -3.5988 -1.5225 34 1 8.1058 -2.0071 -1.1757 35 1 7.8857 -3.6811 -0.6045 36 1 8.9408 -3.4535 -2.9223 37 1 7.4917 -4.4816 -2.8456 38 1 6.1263 -0.0443 -4.6977 39 1 5.6587 -1.5660 -5.4939 40 1 4.5475 -0.7858 -4.3429 41 1 2.2491 -1.6318 1.1526 42 1 3.2629 -2.3923 4.2382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752915842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:59 Heat of formation + Delta-G solvation = -60.899717 kcal Electronic energy + Delta-G solvation = -23130.565769 eV Core-core repulsion = 19724.831838 eV Total energy + Delta-G solvation = -3405.733930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98479 -39.20143 -36.68780 -36.07087 -34.18895 -33.58803 -32.02253 -30.18373 -28.78023 -27.15795 -26.24331 -24.61092 -23.66256 -22.35856 -20.49223 -20.23216 -18.72743 -17.71199 -17.09548 -16.72983 -16.50843 -15.68021 -15.31209 -15.16292 -14.66805 -14.37489 -14.18137 -13.90885 -13.56669 -13.54608 -13.11964 -12.63514 -12.36478 -12.23528 -12.18895 -12.12510 -11.72705 -11.55098 -11.45156 -11.15953 -11.05285 -10.95374 -10.83456 -10.44531 -10.11228 -10.03791 -9.81125 -9.60401 -9.08517 -8.86049 -8.61219 -7.14333 -5.91081 -3.21592 2.55466 2.56838 2.91662 3.33685 3.39788 3.41241 3.42490 4.40838 4.46142 4.52868 4.58543 4.63973 4.94471 5.04958 5.23143 5.34700 5.38151 5.47532 5.49438 5.55027 5.59083 5.66634 5.73459 5.82067 5.83468 5.97683 6.00149 6.02798 6.09450 6.20734 6.28442 6.46831 6.63651 6.70387 6.93813 7.36063 7.57461 7.72148 8.10058 8.26322 8.33780 9.38709 9.92363 10.28229 11.30683 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.004435 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.577004 B = 6311.555792 C = 7429.982486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.054 0.946 4 C 0.114 3.886 5 N -0.704 5.704 6 C 0.501 3.499 7 O -0.539 6.539 8 C 0.128 3.872 9 H 0.097 0.903 10 C -0.129 4.129 11 C -0.121 4.121 12 C -0.135 4.135 13 C 0.519 3.481 14 O -0.558 6.558 15 N -0.584 5.584 16 C 0.065 3.935 17 N -0.724 5.724 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.412 0.588 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.385 0.615 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 1.015 -9.124 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.072 0.928 4 C -0.010 4.010 5 N -0.355 5.355 6 C 0.286 3.714 7 O -0.417 6.417 8 C 0.020 3.980 9 H 0.115 0.885 10 C -0.167 4.167 11 C -0.158 4.158 12 C -0.175 4.175 13 C 0.308 3.692 14 O -0.437 6.437 15 N -0.316 5.316 16 C -0.077 4.077 17 N -0.366 5.366 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.249 0.751 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.219 0.781 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.235 0.785 -10.232 12.008 hybrid contribution 0.155 0.330 1.480 1.524 sum 6.390 1.114 -8.753 10.894 Atomic orbital electron populations 1.22362 0.98226 1.01317 1.00433 1.20513 0.92760 0.95754 0.86070 0.92785 1.21741 0.79088 1.01313 0.98855 1.45987 1.08506 1.57974 1.23063 1.20594 0.89430 0.78412 0.82998 1.90660 1.69934 1.47870 1.33262 1.20944 0.91767 1.01327 0.83988 0.88484 1.21892 0.96955 0.97439 1.00408 1.21656 0.95475 1.02610 0.96088 1.21691 1.02181 0.99900 0.93726 1.20156 0.79581 0.79667 0.89816 1.90695 1.63742 1.67795 1.21439 1.46903 1.34641 1.42307 1.07763 1.22025 0.99891 0.95207 0.90572 1.42470 1.78098 1.10740 1.05321 1.19220 1.36917 0.93921 0.87491 0.91110 1.24726 1.01866 0.95905 0.97985 1.69658 1.50396 1.08650 1.29050 0.86227 0.77363 0.78814 0.83953 1.21727 1.21775 1.20748 0.92273 0.94172 0.93191 0.91660 0.91683 0.75107 0.87956 0.90164 0.90749 0.89710 0.88142 0.88154 0.93387 0.90521 0.88857 0.78089 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.49 37.16 0.35 -2.29 16 2 C 0.16 2.74 3.05 -67.93 -0.21 2.53 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 C 0.11 1.76 5.23 -4.04 -0.02 1.74 16 5 N -0.70 -10.21 5.39 -60.29 -0.32 -10.54 16 6 C 0.50 7.31 6.22 -10.98 -0.07 7.25 16 7 O -0.54 -9.47 14.10 5.56 0.08 -9.39 16 8 C 0.13 1.54 3.14 -69.53 -0.22 1.32 16 9 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 10 C -0.13 -1.40 5.29 -26.59 -0.14 -1.54 16 11 C -0.12 -1.06 6.03 -26.52 -0.16 -1.22 16 12 C -0.14 -1.36 6.03 -28.10 -0.17 -1.53 16 13 C 0.52 7.29 7.47 -11.87 -0.09 7.20 16 14 O -0.56 -9.74 16.21 5.56 0.09 -9.65 16 15 N -0.58 -7.91 2.96 -176.50 -0.52 -8.44 16 16 C 0.07 0.89 9.59 59.85 0.57 1.47 16 17 N -0.72 -15.73 4.56 -53.43 -0.24 -15.97 16 18 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 19 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -25.62 13.06 55.49 0.72 -24.90 16 22 Si 0.91 20.73 29.55 -169.99 -5.02 15.71 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.41 5.97 8.14 -40.82 -0.33 5.63 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.13 7.21 -51.93 -0.37 0.76 16 40 H 0.09 1.34 5.01 -51.93 -0.26 1.08 16 41 H 0.39 9.08 7.80 -40.82 -0.32 8.77 16 42 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -30.74 342.28 -7.20 -37.94 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.74 Total: 11.66 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.39 Total: 8.42 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.37 Total: -59.84 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.17 Total: -19.05 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.74 -7.20 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752915842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.964 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds