Wall clock time and date at job start Tue Mar 31 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 119.99872 * 2 1 4 4 N 1.34770 * 120.00436 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00383 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.47133 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00006 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00244 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00366 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47175 * 34.99887 * 9 8 6 11 11 C 1.52997 * 109.47204 * 274.99782 * 9 8 6 12 12 C 1.53002 * 109.47415 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46972 * 59.99860 * 12 11 9 14 14 C 1.52997 * 109.47165 * 300.00293 * 13 12 11 15 15 H 1.09000 * 109.47140 * 299.99954 * 14 13 12 16 16 N 1.46506 * 109.47277 * 180.02562 * 14 13 12 17 17 C 1.36934 * 119.99890 * 84.99409 * 16 14 13 18 18 H 1.08002 * 120.00030 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00061 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00023 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00030 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47152 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46964 * 120.00382 * 21 19 17 24 24 H 1.48496 * 109.47152 * 239.99869 * 21 19 17 25 25 C 1.52999 * 109.47592 * 60.00300 * 14 13 12 26 26 H 1.09001 * 109.47249 * 270.00523 * 1 2 3 27 27 H 1.09002 * 109.47574 * 30.00401 * 1 2 3 28 28 H 1.09001 * 109.46939 * 150.00483 * 1 2 3 29 29 H 0.97008 * 119.99943 * 0.02562 * 4 2 1 30 30 H 1.08996 * 109.47092 * 60.00784 * 5 4 2 31 31 H 1.09001 * 109.47462 * 300.00319 * 5 4 2 32 32 H 0.97001 * 119.99752 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47140 * 300.00127 * 11 9 8 34 34 H 1.09001 * 109.47230 * 59.99271 * 11 9 8 35 35 H 1.08992 * 109.46974 * 180.02562 * 12 11 9 36 36 H 1.08996 * 109.46550 * 300.00288 * 12 11 9 37 37 H 1.09000 * 109.47054 * 60.00300 * 13 12 11 38 38 H 1.09001 * 109.46997 * 180.02562 * 13 12 11 39 39 H 0.97000 * 120.00161 * 265.00272 * 16 14 13 40 40 H 0.97000 * 120.00331 * 180.02562 * 20 19 17 41 41 H 1.08993 * 109.47839 * 180.02562 * 25 14 13 42 42 H 1.09000 * 109.47160 * 59.99666 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1482 -2.5879 0.0001 7 8 3.3601 -3.5097 0.0001 8 7 5.4733 -2.8342 0.0001 9 6 5.9617 -4.2154 -0.0003 10 1 5.2892 -4.8384 -0.5900 11 6 6.0130 -4.7386 1.4365 12 6 6.5237 -6.1809 1.4361 13 6 7.9264 -6.2251 0.8268 14 6 7.8750 -5.7019 -0.6100 15 1 7.2029 -6.3251 -1.1998 16 7 9.2181 -5.7447 -1.1937 17 6 9.6778 -6.8989 -1.7696 18 1 9.0501 -7.7775 -1.7939 19 6 10.9506 -6.9397 -2.3222 20 7 11.7157 -5.8692 -2.2921 21 14 11.5774 -8.5140 -3.1085 22 1 10.5322 -9.5646 -3.0140 23 1 11.8967 -8.2609 -4.5365 24 1 12.8014 -8.9676 -2.4005 25 6 7.3645 -4.2596 -0.6097 26 1 -0.3634 0.0001 1.0277 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6959 -2.0072 0.0005 30 1 4.0095 -0.6528 0.8895 31 1 4.0089 -0.6538 -0.8905 32 1 6.1036 -2.0969 -0.0003 33 1 6.6855 -4.1157 2.0262 34 1 5.0138 -4.7066 1.8708 35 1 6.5598 -6.5538 2.4597 36 1 5.8516 -6.8041 0.8463 37 1 8.5985 -5.6019 1.4167 38 1 8.2900 -7.2527 0.8261 39 1 9.7817 -4.9556 -1.1721 40 1 12.6049 -5.8976 -2.6786 41 1 7.3274 -3.8869 -1.6332 42 1 8.0366 -3.6363 -0.0198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752962822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:27 Heat of formation + Delta-G solvation = -108.526060 kcal Electronic energy + Delta-G solvation = -22071.394152 eV Core-core repulsion = 18663.594989 eV Total energy + Delta-G solvation = -3407.799164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39218 -40.38651 -39.25404 -36.32291 -35.47366 -34.87187 -32.94811 -31.64203 -30.63490 -29.49257 -27.68204 -25.70370 -23.36506 -22.83051 -21.62019 -21.49573 -20.83826 -19.26474 -18.57963 -17.80774 -17.08509 -16.99053 -16.94345 -16.27282 -15.97557 -15.69565 -15.35126 -15.07597 -15.03722 -14.74764 -14.29681 -14.11222 -13.92991 -13.50883 -13.41305 -13.29203 -12.92562 -12.90575 -12.84037 -12.25831 -12.14086 -12.02283 -11.97483 -11.65724 -11.53424 -11.38694 -11.09670 -10.93698 -10.86904 -10.29039 -10.07721 -8.99949 -7.94386 -5.22006 1.45982 1.47171 1.47550 1.57290 1.61034 1.78128 2.47119 2.56934 3.39195 3.54933 3.65052 3.86382 3.95500 4.04766 4.26335 4.29429 4.32227 4.36155 4.44279 4.53462 4.55140 4.58341 4.67014 4.68638 4.76999 5.02280 5.07364 5.11490 5.17330 5.23164 5.28218 5.35759 5.43646 5.50868 5.53945 5.66185 6.28674 6.44159 6.48694 7.09866 7.17481 7.34918 8.11069 8.34094 9.29191 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.002772 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.110471 B =10097.654115 C =10478.493956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.596 6.596 4 N -0.716 5.716 5 C 0.100 3.900 6 C 0.514 3.486 7 O -0.570 6.570 8 N -0.708 5.708 9 C 0.159 3.841 10 H 0.073 0.927 11 C -0.116 4.116 12 C -0.106 4.106 13 C -0.128 4.128 14 C 0.177 3.823 15 H 0.037 0.963 16 N -0.737 5.737 17 C -0.234 4.234 18 H 0.073 0.927 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.294 1.294 24 H -0.294 1.294 25 C -0.116 4.116 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.418 0.582 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.417 0.583 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.061 0.939 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.899 9.207 8.105 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.298 3.702 3 O -0.477 6.477 4 N -0.371 5.371 5 C -0.027 4.027 6 C 0.300 3.700 7 O -0.450 6.450 8 N -0.359 5.359 9 C 0.054 3.946 10 H 0.091 0.909 11 C -0.155 4.155 12 C -0.145 4.145 13 C -0.168 4.168 14 C 0.068 3.932 15 H 0.055 0.945 16 N -0.376 5.376 17 C -0.366 4.366 18 H 0.091 0.909 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.798 3.202 22 H -0.192 1.192 23 H -0.222 1.222 24 H -0.222 1.222 25 C -0.155 4.155 26 H 0.130 0.870 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.256 0.744 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.254 0.746 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.033 9.090 8.022 24.277 hybrid contribution 1.302 -0.684 -0.608 1.592 sum -19.730 8.406 7.415 22.691 Atomic orbital electron populations 1.21900 0.87906 1.06224 1.06371 1.21568 0.92354 0.82233 0.74082 1.90717 1.72026 1.32893 1.52107 1.45900 1.06060 1.10204 1.74980 1.21096 0.82721 0.93066 1.05863 1.20721 0.82747 0.91278 0.75244 1.90688 1.55893 1.46966 1.51451 1.45907 1.06748 1.09331 1.73890 1.20783 0.94353 0.82384 0.97052 0.90896 1.21812 1.01385 0.96574 0.95682 1.21409 0.95519 0.96371 1.01209 1.22106 0.96799 1.00428 0.97452 1.20317 0.85832 0.94461 0.92588 0.94513 1.42599 1.13964 1.12145 1.68898 1.19613 0.97566 0.91508 1.27931 0.90926 1.25500 0.97604 1.00322 1.03440 1.69804 1.10033 1.29566 1.52586 0.85147 0.77950 0.79710 0.77437 1.19195 1.22174 1.22151 1.21888 0.95131 0.97453 1.01045 0.87007 0.88481 0.87891 0.74367 0.87144 0.87580 0.74641 0.90819 0.91652 0.90653 0.92239 0.92876 0.94111 0.79462 0.94104 0.92000 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.30 71.24 0.73 -0.64 16 2 C 0.51 8.83 7.94 87.66 0.70 9.52 16 3 O -0.60 -15.62 17.10 -3.04 -0.05 -15.67 16 4 N -0.72 -11.39 5.53 -466.81 -2.58 -13.97 16 5 C 0.10 1.58 6.15 85.63 0.53 2.11 16 6 C 0.51 10.19 7.86 87.66 0.69 10.88 16 7 O -0.57 -14.94 15.33 -3.04 -0.05 -14.99 16 8 N -0.71 -13.17 5.08 -442.53 -2.25 -15.42 16 9 C 0.16 3.84 2.46 44.99 0.11 3.95 16 10 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 11 C -0.12 -2.63 5.49 30.59 0.17 -2.46 16 12 C -0.11 -2.71 5.92 30.59 0.18 -2.52 16 13 C -0.13 -4.24 5.50 30.59 0.17 -4.08 16 14 C 0.18 6.59 2.77 44.99 0.12 6.72 16 15 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 16 N -0.74 -35.91 5.12 -322.93 -1.65 -37.57 16 17 C -0.23 -12.80 9.93 84.03 0.83 -11.97 16 18 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 19 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 20 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 21 Si 0.97 45.95 29.55 68.60 2.03 47.97 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 C -0.12 -3.36 4.86 30.60 0.15 -3.21 16 26 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.42 6.02 7.44 -92.70 -0.69 5.33 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.42 5.65 8.60 -92.71 -0.80 4.85 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.37 19.44 7.80 -92.71 -0.72 18.71 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -72.43 348.26 -0.59 -73.03 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -1.17 Total: 30.50 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.85 Total: 4.41 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -6.20 Total: -125.24 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.10 Total: -30.66 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.43 -0.59 -73.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752962822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.501 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds