Wall clock time and date at job start Tue Mar 31 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21288 * 119.99811 * 2 1 4 4 N 1.34769 * 119.99879 * 179.97438 * 2 1 3 5 5 C 1.46922 * 120.63437 * 359.97438 * 4 2 1 6 6 C 1.53193 * 108.77551 * 233.63199 * 5 4 2 7 7 C 1.53042 * 109.30718 * 305.35786 * 6 5 4 8 8 C 1.53036 * 109.53733 * 61.37183 * 7 6 5 9 9 H 1.08998 * 109.53050 * 58.59831 * 8 7 6 10 10 N 1.46903 * 109.49603 * 178.68206 * 8 7 6 11 11 C 1.46901 * 111.00109 * 303.78632 * 10 8 7 12 12 C 1.46904 * 110.99931 * 179.83656 * 10 8 7 13 13 C 1.50703 * 109.47094 * 189.99759 * 12 10 8 14 14 O 1.21288 * 120.00019 * 359.97438 * 13 12 10 15 15 N 1.34779 * 119.99735 * 179.97438 * 13 12 10 16 16 C 1.37099 * 119.99872 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99705 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00084 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00191 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99853 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00033 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00027 * 20 18 16 24 24 C 1.46930 * 120.62882 * 180.02562 * 4 2 1 25 25 H 1.08995 * 109.47235 * 239.99962 * 1 2 3 26 26 H 1.09001 * 109.47049 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46597 * 119.99742 * 1 2 3 28 28 H 1.08999 * 109.58512 * 353.41415 * 5 4 2 29 29 H 1.08997 * 109.59099 * 113.83951 * 5 4 2 30 30 H 1.08991 * 109.50154 * 65.31081 * 6 5 4 31 31 H 1.08998 * 109.49393 * 185.41274 * 6 5 4 32 32 H 1.08999 * 109.46277 * 301.34276 * 7 6 5 33 33 H 1.09008 * 109.45458 * 181.38749 * 7 6 5 34 34 H 1.09003 * 109.46835 * 296.05108 * 11 10 8 35 35 H 1.09000 * 109.47019 * 56.04839 * 11 10 8 36 36 H 1.08994 * 109.47222 * 176.04524 * 11 10 8 37 37 H 1.09002 * 109.47117 * 69.99454 * 12 10 8 38 38 H 1.08998 * 109.47117 * 309.99571 * 12 10 8 39 39 H 0.96998 * 120.00302 * 0.02562 * 15 13 12 40 40 H 0.97009 * 120.00103 * 0.02562 * 19 18 16 41 41 H 1.08999 * 109.58937 * 6.58398 * 24 4 2 42 42 H 1.09001 * 109.70276 * 246.22563 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4604 -2.4476 0.0017 6 6 1.9685 -3.2983 1.1699 7 6 3.4899 -3.4333 1.0733 8 6 4.1337 -2.0482 1.1686 9 1 3.8504 -1.5787 2.1106 10 7 5.5954 -2.1817 1.1075 11 6 6.0862 -3.0824 2.1591 12 6 6.2480 -0.8684 1.1924 13 6 7.7154 -1.0156 0.8823 14 8 8.1727 -2.1072 0.6172 15 7 8.5196 0.0659 0.8997 16 6 9.8547 -0.0681 0.6181 17 1 10.2618 -1.0402 0.3820 18 6 10.6839 1.0466 0.6365 19 7 10.1886 2.2293 0.9243 20 14 12.5028 0.8642 0.2522 21 1 12.7200 1.0352 -1.2069 22 1 12.9633 -0.4855 0.6664 23 1 13.2711 1.8978 0.9915 24 6 3.6501 -1.1833 0.0011 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3632 -0.5138 -0.8900 28 1 0.3922 -2.2656 0.1197 29 1 1.6425 -2.9702 -0.9373 30 1 1.7051 -2.8173 2.1118 31 1 1.5120 -4.2870 1.1255 32 1 3.7541 -3.8919 0.1205 33 1 3.8515 -4.0587 1.8897 34 1 5.8741 -2.6492 3.1366 35 1 5.5869 -4.0474 2.0732 36 1 7.1619 -3.2188 2.0478 37 1 6.1277 -0.4673 2.1988 38 1 5.7912 -0.1885 0.4733 39 1 8.1540 0.9388 1.1121 40 1 9.2441 2.3240 1.1243 41 1 4.0267 -0.1672 0.1188 42 1 4.0134 -1.6012 -0.9378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752986130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:39 Heat of formation + Delta-G solvation = -59.686823 kcal Electronic energy + Delta-G solvation = -23010.789517 eV Core-core repulsion = 19605.108181 eV Total energy + Delta-G solvation = -3405.681335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45416 -38.83400 -37.71920 -35.82869 -34.16554 -32.64535 -31.18942 -31.05984 -29.23970 -28.05003 -25.61640 -24.42370 -23.91939 -22.27082 -20.40244 -19.47550 -19.21580 -17.83233 -17.41768 -16.33172 -16.21507 -15.66200 -15.31557 -14.86902 -14.65758 -14.42452 -14.17892 -13.79182 -13.64476 -13.45074 -13.38390 -13.17126 -12.73495 -12.62652 -12.37024 -12.12482 -11.66560 -11.59648 -11.31413 -11.19111 -11.11125 -10.96850 -10.81501 -10.41069 -10.18877 -9.97642 -9.81736 -9.46763 -8.84080 -8.48137 -8.00477 -7.89911 -6.70512 -3.83578 2.45163 2.76541 3.34403 3.37821 3.57181 3.87621 3.91923 4.30548 4.33397 4.58340 4.61917 4.68747 4.81704 4.92828 5.02008 5.06018 5.08545 5.21105 5.27373 5.30508 5.46583 5.49927 5.58814 5.62247 5.68941 5.76099 5.80672 5.86531 5.91588 5.98093 6.08207 6.16281 6.26778 6.52034 7.18656 7.20498 7.33179 7.85872 7.99934 8.13046 8.65552 8.85479 9.52955 9.93705 10.72990 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.003751 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.549222 B = 7462.600114 C = 8364.365792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.544 6.544 4 N -0.612 5.612 5 C 0.105 3.895 6 C -0.133 4.133 7 C -0.116 4.116 8 C 0.072 3.928 9 H 0.040 0.960 10 N -0.511 5.511 11 C 0.021 3.979 12 C 0.040 3.960 13 C 0.448 3.552 14 O -0.572 6.572 15 N -0.576 5.576 16 C -0.382 4.382 17 H 0.099 0.901 18 C -0.010 4.010 19 N -0.902 5.902 20 Si 1.094 2.906 21 H -0.285 1.285 22 H -0.284 1.284 23 H -0.281 1.281 24 C 0.114 3.886 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.013 0.987 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.375 0.625 40 H 0.262 0.738 41 H 0.094 0.906 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.273 -9.173 0.877 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.421 6.421 4 N -0.347 5.347 5 C -0.017 4.017 6 C -0.172 4.172 7 C -0.153 4.153 8 C -0.037 4.037 9 H 0.058 0.942 10 N -0.235 5.235 11 C -0.127 4.127 12 C -0.091 4.091 13 C 0.234 3.766 14 O -0.455 6.455 15 N -0.214 5.214 16 C -0.511 4.511 17 H 0.117 0.883 18 C -0.213 4.213 19 N -0.541 5.541 20 Si 0.920 3.080 21 H -0.211 1.211 22 H -0.210 1.210 23 H -0.207 1.207 24 C -0.009 4.009 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.208 0.792 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.060 -8.708 0.095 20.955 hybrid contribution -1.991 -0.027 1.106 2.278 sum -21.051 -8.734 1.201 22.823 Atomic orbital electron populations 1.21933 0.91852 1.05406 1.03962 1.20834 0.90629 0.83062 0.75695 1.90748 1.70719 1.30998 1.49653 1.48141 1.07004 1.06042 1.73496 1.21805 0.96524 0.84144 0.99271 1.21929 0.96493 1.00211 0.98588 1.21657 0.93759 0.96376 1.03558 1.21924 0.88557 0.96112 0.97135 0.94227 1.61584 1.02299 1.10906 1.48699 1.22598 1.04045 0.95696 0.90359 1.21968 0.95268 0.91214 1.00675 1.19606 0.86874 0.85361 0.84771 1.90475 1.75972 1.25887 1.53193 1.41950 1.09050 1.08135 1.62293 1.20555 0.83589 0.98743 1.48200 0.88285 1.26501 1.07318 0.91322 0.96110 1.70860 1.15374 1.23634 1.44221 0.83089 0.72384 0.75661 0.76841 1.21117 1.20969 1.20695 1.21679 0.78447 1.01859 0.98914 0.89473 0.89027 0.89428 0.89592 0.90924 0.91578 0.90247 0.90522 0.91034 0.96798 0.91682 0.88430 0.93529 0.89199 0.79162 0.92678 0.88814 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 8.67 36.01 0.31 -0.88 16 2 C 0.51 6.16 7.81 -10.99 -0.09 6.07 16 3 O -0.54 -9.28 16.50 5.55 0.09 -9.19 16 4 N -0.61 -6.72 2.97 -172.80 -0.51 -7.23 16 5 C 0.11 0.74 6.34 -3.71 -0.02 0.72 16 6 C -0.13 -0.96 6.08 -26.61 -0.16 -1.12 16 7 C -0.12 -1.18 4.86 -26.69 -0.13 -1.31 16 8 C 0.07 0.96 2.09 -67.62 -0.14 0.82 16 9 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 10 N -0.51 -8.60 4.37 -236.22 -1.03 -9.64 16 11 C 0.02 0.33 8.84 60.07 0.53 0.87 16 12 C 0.04 0.76 5.26 -4.97 -0.03 0.73 16 13 C 0.45 10.89 7.51 -10.98 -0.08 10.81 16 14 O -0.57 -15.63 13.88 5.55 0.08 -15.56 16 15 N -0.58 -14.98 5.28 -10.96 -0.06 -15.04 16 16 C -0.38 -10.95 9.68 -14.94 -0.14 -11.10 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 18 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 19 N -0.90 -25.96 13.68 55.50 0.76 -25.20 16 20 Si 1.09 24.83 29.92 -169.99 -5.09 19.74 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.11 1.54 5.32 -3.74 -0.02 1.52 16 25 H 0.09 0.43 7.69 -51.93 -0.40 0.03 16 26 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 27 H 0.09 0.43 7.94 -51.93 -0.41 0.01 16 28 H 0.09 0.38 5.93 -51.93 -0.31 0.08 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.72 6.19 -51.92 -0.32 0.40 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.89 5.99 -51.93 -0.31 0.57 16 36 H 0.10 1.94 5.88 -51.93 -0.31 1.63 16 37 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.09 1.61 5.95 -51.93 -0.31 1.30 16 39 H 0.38 9.16 6.73 -40.82 -0.27 8.89 16 40 H 0.26 7.31 6.78 -40.82 -0.28 7.03 16 41 H 0.09 1.49 5.38 -51.93 -0.28 1.21 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -35.36 330.75 -7.02 -42.37 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.17 Total: 8.01 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.07 Total: 6.74 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.84 Total: -57.11 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.17 Total: -24.75 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.09 Total: 19.74 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.36 -7.02 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752986130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.314 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds