Wall clock time and date at job start Tue Mar 31 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21288 * 119.99811 * 2 1 4 4 N 1.34769 * 119.99879 * 179.97438 * 2 1 3 5 5 C 1.46922 * 120.63437 * 359.97438 * 4 2 1 6 6 C 1.53193 * 108.77551 * 233.63199 * 5 4 2 7 7 C 1.53042 * 109.30718 * 305.35786 * 6 5 4 8 8 C 1.53036 * 109.53733 * 61.37183 * 7 6 5 9 9 H 1.08998 * 109.53050 * 58.59831 * 8 7 6 10 10 N 1.46903 * 109.49603 * 178.68206 * 8 7 6 11 11 C 1.46901 * 111.00109 * 303.78632 * 10 8 7 12 12 C 1.46904 * 110.99931 * 179.83656 * 10 8 7 13 13 C 1.50703 * 109.47094 * 189.99759 * 12 10 8 14 14 O 1.21288 * 120.00019 * 359.97438 * 13 12 10 15 15 N 1.34779 * 119.99735 * 179.97438 * 13 12 10 16 16 C 1.37099 * 119.99872 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99705 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00084 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00191 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99853 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00033 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00027 * 20 18 16 24 24 C 1.46930 * 120.62882 * 180.02562 * 4 2 1 25 25 H 1.08995 * 109.47235 * 239.99962 * 1 2 3 26 26 H 1.09001 * 109.47049 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46597 * 119.99742 * 1 2 3 28 28 H 1.08999 * 109.58512 * 353.41415 * 5 4 2 29 29 H 1.08997 * 109.59099 * 113.83951 * 5 4 2 30 30 H 1.08991 * 109.50154 * 65.31081 * 6 5 4 31 31 H 1.08998 * 109.49393 * 185.41274 * 6 5 4 32 32 H 1.08999 * 109.46277 * 301.34276 * 7 6 5 33 33 H 1.09008 * 109.45458 * 181.38749 * 7 6 5 34 34 H 1.09003 * 109.46835 * 296.05108 * 11 10 8 35 35 H 1.09000 * 109.47019 * 56.04839 * 11 10 8 36 36 H 1.08994 * 109.47222 * 176.04524 * 11 10 8 37 37 H 1.09002 * 109.47117 * 69.99454 * 12 10 8 38 38 H 1.08998 * 109.47117 * 309.99571 * 12 10 8 39 39 H 0.96998 * 120.00302 * 0.02562 * 15 13 12 40 40 H 0.97009 * 120.00103 * 0.02562 * 19 18 16 41 41 H 1.08999 * 109.58937 * 6.58398 * 24 4 2 42 42 H 1.09001 * 109.70276 * 246.22563 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4604 -2.4476 0.0017 6 6 1.9685 -3.2983 1.1699 7 6 3.4899 -3.4333 1.0733 8 6 4.1337 -2.0482 1.1686 9 1 3.8504 -1.5787 2.1106 10 7 5.5954 -2.1817 1.1075 11 6 6.0862 -3.0824 2.1591 12 6 6.2480 -0.8684 1.1924 13 6 7.7154 -1.0156 0.8823 14 8 8.1727 -2.1072 0.6172 15 7 8.5196 0.0659 0.8997 16 6 9.8547 -0.0681 0.6181 17 1 10.2618 -1.0402 0.3820 18 6 10.6839 1.0466 0.6365 19 7 10.1886 2.2293 0.9243 20 14 12.5028 0.8642 0.2522 21 1 12.7200 1.0352 -1.2069 22 1 12.9633 -0.4855 0.6664 23 1 13.2711 1.8978 0.9915 24 6 3.6501 -1.1833 0.0011 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3632 -0.5138 -0.8900 28 1 0.3922 -2.2656 0.1197 29 1 1.6425 -2.9702 -0.9373 30 1 1.7051 -2.8173 2.1118 31 1 1.5120 -4.2870 1.1255 32 1 3.7541 -3.8919 0.1205 33 1 3.8515 -4.0587 1.8897 34 1 5.8741 -2.6492 3.1366 35 1 5.5869 -4.0474 2.0732 36 1 7.1619 -3.2188 2.0478 37 1 6.1277 -0.4673 2.1988 38 1 5.7912 -0.1885 0.4733 39 1 8.1540 0.9388 1.1121 40 1 9.2441 2.3240 1.1243 41 1 4.0267 -0.1672 0.1188 42 1 4.0134 -1.6012 -0.9378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752986130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:38 Heat of formation + Delta-G solvation = -86.930157 kcal Electronic energy + Delta-G solvation = -23011.970876 eV Core-core repulsion = 19605.108181 eV Total energy + Delta-G solvation = -3406.862695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43784 -40.49066 -39.06668 -37.08225 -36.19501 -33.58156 -33.14685 -32.06644 -30.16301 -29.44076 -26.98711 -25.85461 -25.27329 -23.27691 -21.55627 -21.24804 -20.06988 -19.96343 -18.49223 -17.94653 -17.17336 -17.03419 -16.52126 -16.33408 -15.86679 -15.74971 -15.59471 -15.43772 -14.95713 -14.70722 -14.34677 -14.14162 -13.86428 -13.58101 -13.36186 -13.29477 -13.04917 -12.91096 -12.85773 -12.61310 -12.46438 -11.94471 -11.90406 -11.87895 -11.79122 -11.49332 -11.45558 -10.92033 -10.39622 -10.12742 -9.74189 -9.36951 -8.95253 -6.09094 1.50479 1.52942 1.56764 1.80976 1.90445 1.96872 2.37090 2.65202 3.13764 3.20343 3.51149 3.77655 3.84630 3.90744 4.03129 4.07587 4.16439 4.20511 4.25628 4.42377 4.45730 4.51786 4.53773 4.62503 4.65429 4.75463 4.78013 4.94194 4.98204 5.00824 5.13267 5.19560 5.33575 5.42913 5.56981 5.83551 5.93067 6.07734 6.40294 6.54190 6.71955 7.11808 7.40990 7.88552 8.51893 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.003751 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.549222 B = 7462.600114 C = 8364.365792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.497 3.503 3 O -0.608 6.608 4 N -0.609 5.609 5 C 0.098 3.902 6 C -0.125 4.125 7 C -0.113 4.113 8 C 0.078 3.922 9 H 0.037 0.963 10 N -0.526 5.526 11 C 0.026 3.974 12 C 0.054 3.946 13 C 0.448 3.552 14 O -0.603 6.603 15 N -0.589 5.589 16 C -0.409 4.409 17 H 0.076 0.924 18 C -0.044 4.044 19 N -0.918 5.918 20 Si 1.138 2.862 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.273 1.273 24 C 0.116 3.884 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.024 0.976 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.382 0.618 40 H 0.257 0.743 41 H 0.062 0.938 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.804 -10.691 1.053 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.289 3.711 3 O -0.490 6.490 4 N -0.342 5.342 5 C -0.022 4.022 6 C -0.164 4.164 7 C -0.151 4.151 8 C -0.030 4.030 9 H 0.055 0.945 10 N -0.250 5.250 11 C -0.121 4.121 12 C -0.078 4.078 13 C 0.236 3.764 14 O -0.488 6.488 15 N -0.228 5.228 16 C -0.538 4.538 17 H 0.094 0.906 18 C -0.242 4.242 19 N -0.557 5.557 20 Si 0.958 3.042 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.197 1.197 24 C -0.008 4.008 25 H 0.135 0.865 26 H 0.105 0.895 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.215 0.785 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.656 -10.266 0.277 23.967 hybrid contribution -1.289 0.364 1.044 1.698 sum -22.945 -9.902 1.321 25.025 Atomic orbital electron populations 1.21961 0.87303 1.06118 1.06657 1.21887 0.92771 0.82239 0.74222 1.90721 1.72320 1.33288 1.52650 1.48290 1.05796 1.07618 1.72536 1.22184 0.98099 0.82114 0.99844 1.21926 0.93841 1.01991 0.98623 1.21684 0.96053 0.93864 1.03504 1.21985 0.86087 0.98331 0.96633 0.94527 1.61568 1.04547 1.09607 1.49311 1.22495 1.01779 0.97189 0.90678 1.21775 0.91484 0.93037 1.01457 1.20565 0.88833 0.84320 0.82702 1.90453 1.77259 1.27041 1.54035 1.42033 1.08703 1.08946 1.63119 1.20570 0.85169 0.98212 1.49816 0.90567 1.27916 1.10928 0.90456 0.94881 1.70941 1.15354 1.24187 1.45243 0.82577 0.67862 0.76257 0.77553 1.19588 1.19979 1.19743 1.21423 0.80808 0.99942 0.98627 0.86515 0.89528 0.86539 0.85894 0.89945 0.91393 0.87066 0.90980 0.90525 0.95749 0.88725 0.92461 0.92234 0.88445 0.78482 0.93193 0.91987 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.67 71.24 0.62 -1.08 16 2 C 0.50 11.45 7.81 87.66 0.68 12.13 16 3 O -0.61 -21.35 16.50 -3.05 -0.05 -21.41 16 4 N -0.61 -12.32 2.97 -819.01 -2.43 -14.75 16 5 C 0.10 0.99 6.34 86.36 0.55 1.54 16 6 C -0.13 -1.26 6.08 30.67 0.19 -1.08 16 7 C -0.11 -2.01 4.86 30.62 0.15 -1.86 16 8 C 0.08 2.01 2.09 44.97 0.09 2.10 16 9 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 10 N -0.53 -17.71 4.37 -901.26 -3.94 -21.65 16 11 C 0.03 0.84 8.84 127.69 1.13 1.97 16 12 C 0.05 2.08 5.26 85.56 0.45 2.53 16 13 C 0.45 22.57 7.51 87.66 0.66 23.23 16 14 O -0.60 -34.22 13.88 -3.05 -0.04 -34.26 16 15 N -0.59 -31.78 5.28 -306.99 -1.62 -33.40 16 16 C -0.41 -24.21 9.68 84.04 0.81 -23.40 16 17 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 18 C -0.04 -2.48 5.50 84.93 0.47 -2.01 16 19 N -0.92 -53.49 13.68 21.66 0.30 -53.19 16 20 Si 1.14 50.05 29.92 68.60 2.05 52.11 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 C 0.12 3.15 5.32 86.34 0.46 3.61 16 25 H 0.12 0.57 7.69 -2.39 -0.02 0.56 16 26 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 27 H 0.12 0.59 7.94 -2.39 -0.02 0.57 16 28 H 0.12 0.38 5.93 -2.39 -0.01 0.37 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.30 6.19 -2.38 -0.01 1.28 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 2.43 5.99 -2.39 -0.01 2.41 16 36 H 0.06 2.33 5.88 -2.39 -0.01 2.31 16 37 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 38 H 0.10 3.64 5.95 -2.39 -0.01 3.63 16 39 H 0.38 19.38 6.73 -92.71 -0.62 18.75 16 40 H 0.26 14.71 6.78 -92.70 -0.63 14.08 16 41 H 0.06 2.08 5.38 -2.39 -0.01 2.06 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -81.28 330.75 1.07 -80.21 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.55 Total: 28.68 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 6.26 Total: 17.67 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -7.70 Total: -123.00 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -0.09 Total: -55.66 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.11 kcal Total: -81.28 1.07 -80.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752986130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.725 kcal (2) G-P(sol) polarization free energy of solvation -81.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds