Wall clock time and date at job start Tue Mar 31 2020 03:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36940 * 119.99929 * 2 1 4 4 H 1.07996 * 119.99596 * 203.05083 * 3 2 1 5 5 C 1.38813 * 120.00193 * 23.04296 * 3 2 1 6 6 N 1.31622 * 119.99655 * 12.94097 * 5 3 2 7 7 Si 1.86795 * 119.99942 * 192.94201 * 5 3 2 8 8 H 1.48498 * 109.47239 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47281 * 119.99947 * 7 5 3 10 10 H 1.48501 * 109.46811 * 240.00108 * 7 5 3 11 11 C 1.46498 * 119.99893 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47037 * 89.99662 * 11 2 1 13 13 N 1.46498 * 109.47037 * 179.97438 * 12 11 2 14 14 C 1.34781 * 120.00209 * 179.73019 * 13 12 11 15 15 O 1.21282 * 119.99807 * 0.27117 * 14 13 12 16 16 C 1.50699 * 120.00312 * 180.27644 * 14 13 12 17 17 C 1.52999 * 109.47262 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.29820 * 305.00384 * 17 16 14 19 19 C 1.52917 * 109.29985 * 185.41443 * 17 16 14 20 20 C 1.53270 * 108.71220 * 188.73894 * 19 17 16 21 21 C 1.53075 * 108.24829 * 67.81594 * 20 19 17 22 22 C 1.50181 * 109.89109 * 311.03501 * 21 20 19 23 23 O 1.21271 * 118.24441 * 197.60041 * 22 21 20 24 24 N 1.33358 * 123.50677 * 17.57903 * 22 21 20 25 25 H 1.09006 * 109.46625 * 275.12743 * 1 2 3 26 26 H 1.09000 * 109.47311 * 35.12269 * 1 2 3 27 27 H 1.08995 * 109.47503 * 155.12932 * 1 2 3 28 28 H 0.97000 * 119.99576 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.46886 * 330.00107 * 11 2 1 30 30 H 1.08992 * 109.46923 * 210.00045 * 11 2 1 31 31 H 1.09004 * 109.46920 * 60.00465 * 12 11 2 32 32 H 1.08992 * 109.47577 * 299.99983 * 12 11 2 33 33 H 0.97000 * 120.00420 * 359.97438 * 13 12 11 34 34 H 1.08998 * 109.46725 * 299.99955 * 16 14 13 35 35 H 1.09003 * 109.47237 * 59.99751 * 16 14 13 36 36 H 1.08994 * 109.60332 * 308.69120 * 19 17 16 37 37 H 1.08993 * 109.60185 * 69.18324 * 19 17 16 38 38 H 1.08999 * 109.82023 * 308.10761 * 20 19 17 39 39 H 1.08998 * 109.73970 * 187.47928 * 20 19 17 40 40 H 1.08993 * 109.40177 * 190.90664 * 21 20 19 41 41 H 1.09005 * 109.39973 * 71.15861 * 21 20 19 42 42 H 0.97001 * 117.94329 * 177.75480 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3402 0.4705 6 7 0.4119 2.2597 1.1460 7 14 2.3158 4.0074 0.1452 8 1 3.5692 3.8265 -0.6304 9 1 1.3715 4.8506 -0.6309 10 1 2.6242 4.6704 1.4376 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7111 -1.4417 13 7 3.1854 -2.9795 -1.4411 14 6 3.5177 -3.5664 -2.6081 15 8 3.2141 -3.0419 -3.6586 16 6 4.2662 -4.8743 -2.6075 17 6 4.5159 -5.3197 -4.0498 18 1 3.5665 -5.3607 -4.5836 19 6 5.1542 -6.7093 -4.0463 20 6 5.5981 -7.0500 -5.4732 21 6 6.7519 -6.1180 -5.8517 22 6 6.3873 -4.6970 -5.5305 23 8 7.0285 -3.8085 -6.0502 24 7 5.3958 -4.3600 -4.7048 25 1 -0.3633 0.0919 1.0236 26 1 -0.3634 0.8405 -0.5912 27 1 -0.3634 -0.9323 -0.4322 28 1 -0.0152 3.0663 1.4744 29 1 1.6084 -2.0281 0.5147 30 1 3.1498 -1.1382 0.5143 31 1 3.0416 -0.9517 -1.9559 32 1 1.5001 -1.8416 -1.9555 33 1 3.4286 -3.3988 -0.6009 34 1 5.2202 -4.7466 -2.0960 35 1 3.6754 -5.6309 -2.0910 36 1 6.0177 -6.7133 -3.3812 37 1 4.4254 -7.4456 -3.7079 38 1 4.7673 -6.9044 -6.1634 39 1 5.9340 -8.0861 -5.5167 40 1 6.9545 -6.2075 -6.9189 41 1 7.6432 -6.3987 -5.2904 42 1 5.2514 -3.4170 -4.5290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753054193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:51 Heat of formation + Delta-G solvation = -66.401724 kcal Electronic energy + Delta-G solvation = -22159.413895 eV Core-core repulsion = 18753.441379 eV Total energy + Delta-G solvation = -3405.972515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72069 -39.37077 -36.94274 -36.07442 -34.26816 -33.43858 -31.76157 -31.18416 -28.78665 -27.34223 -25.88139 -24.09589 -23.09091 -22.44078 -20.75710 -20.15769 -19.39572 -17.47565 -17.07730 -16.63480 -16.38709 -16.01454 -15.41663 -15.22134 -14.76447 -14.43691 -14.24597 -14.00558 -13.80574 -13.49949 -13.30436 -13.12079 -12.70227 -12.40865 -12.14987 -11.86640 -11.60042 -11.39908 -11.36901 -11.21675 -10.94047 -10.88725 -10.62579 -10.38800 -10.00763 -9.96589 -9.91107 -9.71794 -9.18207 -8.81234 -8.59618 -6.83325 -5.77321 -3.25713 2.54511 2.66335 3.17351 3.25487 3.36998 3.44685 3.47424 4.17284 4.28243 4.31669 4.45848 4.49327 4.71980 4.85720 4.90170 5.10460 5.16875 5.22263 5.36597 5.37340 5.47880 5.50464 5.57512 5.58626 5.75350 5.81940 5.85159 6.19631 6.50188 6.59196 6.70296 6.75045 6.82476 7.29927 7.32792 7.61935 7.67633 7.77588 8.14052 8.29248 8.35319 9.18005 9.80247 10.27941 11.27521 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.002957 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.487118 B = 9465.941512 C =10199.921634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.721 5.721 14 C 0.503 3.497 15 O -0.543 6.543 16 C -0.157 4.157 17 C 0.156 3.844 18 H 0.085 0.915 19 C -0.133 4.133 20 C -0.124 4.124 21 C -0.136 4.136 22 C 0.515 3.485 23 O -0.563 6.563 24 N -0.707 5.707 25 H 0.033 0.967 26 H 0.042 0.958 27 H -0.001 1.001 28 H 0.253 0.747 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 -22.928 -6.636 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.015 3.985 12 C -0.033 4.033 13 N -0.372 5.372 14 C 0.288 3.712 15 O -0.421 6.421 16 C -0.198 4.198 17 C 0.050 3.950 18 H 0.102 0.898 19 C -0.171 4.171 20 C -0.161 4.161 21 C -0.176 4.176 22 C 0.302 3.698 23 O -0.442 6.442 24 N -0.361 5.361 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.039 -22.135 -7.604 24.747 hybrid contribution 0.240 1.126 0.483 1.249 sum 8.279 -21.009 -7.121 23.678 Atomic orbital electron populations 1.20842 0.82302 0.95599 0.99638 1.43796 1.01958 1.00326 1.85944 1.19233 0.98393 0.85495 1.35839 0.91282 1.25037 0.97815 0.98665 0.97956 1.70082 1.19388 1.27239 1.38373 0.86167 0.78692 0.84076 0.77522 1.20202 1.21496 1.21653 1.20831 0.96728 0.89204 0.91709 1.22462 0.95644 0.83027 1.02187 1.46123 1.57925 1.25101 1.08016 1.20580 0.79766 0.86523 0.84284 1.90728 1.54835 1.65425 1.31114 1.22161 1.02439 0.96608 0.98608 1.20714 0.94181 0.88460 0.91604 0.89751 1.21958 1.01848 0.95457 0.97871 1.21647 0.98227 0.99656 0.96593 1.21661 1.00149 0.91478 1.04290 1.20188 0.79545 0.91804 0.78290 1.90767 1.51589 1.50177 1.51657 1.45706 1.32154 1.11656 1.46609 0.94837 0.93913 0.98283 0.93709 0.94128 0.92965 0.91502 0.92177 0.76910 0.88168 0.87270 0.90579 0.89514 0.90886 0.90328 0.88309 0.88350 0.75443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 8.98 59.85 0.54 4.46 16 2 N -0.60 -14.80 2.92 -181.12 -0.53 -15.32 16 3 C -0.26 -7.13 9.65 -15.06 -0.15 -7.27 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 5 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -26.34 10.71 55.49 0.59 -25.74 16 7 Si 0.91 22.00 29.57 -169.99 -5.03 16.97 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 C 0.14 2.75 5.76 -4.04 -0.02 2.73 16 12 C 0.09 1.62 6.00 -4.04 -0.02 1.59 16 13 N -0.72 -9.18 5.56 -60.30 -0.33 -9.52 16 14 C 0.50 6.36 7.47 -10.98 -0.08 6.28 16 15 O -0.54 -9.23 14.53 5.56 0.08 -9.15 16 16 C -0.16 -1.18 5.35 -27.88 -0.15 -1.32 16 17 C 0.16 1.28 2.65 -68.37 -0.18 1.10 16 18 H 0.08 0.78 7.95 -51.93 -0.41 0.36 16 19 C -0.13 -0.66 5.28 -26.63 -0.14 -0.80 16 20 C -0.12 -0.65 6.04 -26.55 -0.16 -0.81 16 21 C -0.14 -1.03 6.02 -28.10 -0.17 -1.20 16 22 C 0.51 6.36 7.71 -11.87 -0.09 6.27 16 23 O -0.56 -9.69 17.78 5.57 0.10 -9.60 16 24 N -0.71 -8.20 5.00 -54.85 -0.27 -8.47 16 25 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 26 H 0.04 1.13 7.34 -51.93 -0.38 0.74 16 27 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.41 5.79 6.90 -40.82 -0.28 5.51 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -35.22 343.11 -7.77 -42.99 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.83 Total: 1.63 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -0.72 Total: 11.04 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.54 Total: -59.06 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.18 Total: -18.75 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.22 -7.77 -42.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753054193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.411 kcal (2) G-P(sol) polarization free energy of solvation -35.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds