Wall clock time and date at job start Tue Mar 31 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36940 * 119.99929 * 2 1 4 4 H 1.07996 * 119.99596 * 203.05083 * 3 2 1 5 5 C 1.38813 * 120.00193 * 23.04296 * 3 2 1 6 6 N 1.31622 * 119.99655 * 12.94097 * 5 3 2 7 7 Si 1.86795 * 119.99942 * 192.94201 * 5 3 2 8 8 H 1.48498 * 109.47239 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47281 * 119.99947 * 7 5 3 10 10 H 1.48501 * 109.46811 * 240.00108 * 7 5 3 11 11 C 1.46498 * 119.99893 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47037 * 89.99662 * 11 2 1 13 13 N 1.46498 * 109.47037 * 179.97438 * 12 11 2 14 14 C 1.34781 * 120.00209 * 179.73019 * 13 12 11 15 15 O 1.21282 * 119.99807 * 0.27117 * 14 13 12 16 16 C 1.50699 * 120.00312 * 180.27644 * 14 13 12 17 17 C 1.52999 * 109.47262 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.29820 * 305.00384 * 17 16 14 19 19 C 1.52917 * 109.29985 * 185.41443 * 17 16 14 20 20 C 1.53270 * 108.71220 * 188.73894 * 19 17 16 21 21 C 1.53075 * 108.24829 * 67.81594 * 20 19 17 22 22 C 1.50181 * 109.89109 * 311.03501 * 21 20 19 23 23 O 1.21271 * 118.24441 * 197.60041 * 22 21 20 24 24 N 1.33358 * 123.50677 * 17.57903 * 22 21 20 25 25 H 1.09006 * 109.46625 * 275.12743 * 1 2 3 26 26 H 1.09000 * 109.47311 * 35.12269 * 1 2 3 27 27 H 1.08995 * 109.47503 * 155.12932 * 1 2 3 28 28 H 0.97000 * 119.99576 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.46886 * 330.00107 * 11 2 1 30 30 H 1.08992 * 109.46923 * 210.00045 * 11 2 1 31 31 H 1.09004 * 109.46920 * 60.00465 * 12 11 2 32 32 H 1.08992 * 109.47577 * 299.99983 * 12 11 2 33 33 H 0.97000 * 120.00420 * 359.97438 * 13 12 11 34 34 H 1.08998 * 109.46725 * 299.99955 * 16 14 13 35 35 H 1.09003 * 109.47237 * 59.99751 * 16 14 13 36 36 H 1.08994 * 109.60332 * 308.69120 * 19 17 16 37 37 H 1.08993 * 109.60185 * 69.18324 * 19 17 16 38 38 H 1.08999 * 109.82023 * 308.10761 * 20 19 17 39 39 H 1.08998 * 109.73970 * 187.47928 * 20 19 17 40 40 H 1.08993 * 109.40177 * 190.90664 * 21 20 19 41 41 H 1.09005 * 109.39973 * 71.15861 * 21 20 19 42 42 H 0.97001 * 117.94329 * 177.75480 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3402 0.4705 6 7 0.4119 2.2597 1.1460 7 14 2.3158 4.0074 0.1452 8 1 3.5692 3.8265 -0.6304 9 1 1.3715 4.8506 -0.6309 10 1 2.6242 4.6704 1.4376 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7111 -1.4417 13 7 3.1854 -2.9795 -1.4411 14 6 3.5177 -3.5664 -2.6081 15 8 3.2141 -3.0419 -3.6586 16 6 4.2662 -4.8743 -2.6075 17 6 4.5159 -5.3197 -4.0498 18 1 3.5665 -5.3607 -4.5836 19 6 5.1542 -6.7093 -4.0463 20 6 5.5981 -7.0500 -5.4732 21 6 6.7519 -6.1180 -5.8517 22 6 6.3873 -4.6970 -5.5305 23 8 7.0285 -3.8085 -6.0502 24 7 5.3958 -4.3600 -4.7048 25 1 -0.3633 0.0919 1.0236 26 1 -0.3634 0.8405 -0.5912 27 1 -0.3634 -0.9323 -0.4322 28 1 -0.0152 3.0663 1.4744 29 1 1.6084 -2.0281 0.5147 30 1 3.1498 -1.1382 0.5143 31 1 3.0416 -0.9517 -1.9559 32 1 1.5001 -1.8416 -1.9555 33 1 3.4286 -3.3988 -0.6009 34 1 5.2202 -4.7466 -2.0960 35 1 3.6754 -5.6309 -2.0910 36 1 6.0177 -6.7133 -3.3812 37 1 4.4254 -7.4456 -3.7079 38 1 4.7673 -6.9044 -6.1634 39 1 5.9340 -8.0861 -5.5167 40 1 6.9545 -6.2075 -6.9189 41 1 7.6432 -6.3987 -5.2904 42 1 5.2514 -3.4170 -4.5290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753054193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:50 Heat of formation + Delta-G solvation = -93.636936 kcal Electronic energy + Delta-G solvation = -22160.594902 eV Core-core repulsion = 18753.441379 eV Total energy + Delta-G solvation = -3407.153523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58037 -40.44365 -38.04181 -37.57304 -35.70697 -34.06661 -33.36878 -32.35251 -30.07545 -28.32239 -27.90398 -25.30466 -24.10804 -23.29508 -22.38676 -21.31697 -20.01842 -18.81458 -18.30511 -17.88630 -17.29678 -17.22177 -16.67829 -16.40711 -16.20658 -15.61061 -15.23575 -15.14795 -15.02729 -14.49629 -14.44785 -14.20706 -14.06022 -13.94654 -13.11189 -12.91959 -12.83155 -12.68790 -12.56010 -12.50366 -12.21544 -12.16438 -11.99626 -11.86825 -11.79950 -11.77741 -11.00446 -10.75106 -10.66192 -10.10661 -10.03905 -8.85789 -7.88092 -5.38208 1.42630 1.45422 1.55072 1.62234 1.66667 2.19806 2.36646 2.50532 3.26066 3.54909 3.65963 3.70496 3.84694 3.97432 4.09279 4.21521 4.23941 4.31724 4.36294 4.61922 4.66145 4.69076 4.76052 4.80106 4.92896 5.01954 5.04656 5.12592 5.13182 5.15520 5.30556 5.40662 5.50258 5.59761 5.67793 5.75790 6.28571 6.45058 6.62312 7.10288 7.19624 7.32211 7.81142 8.23106 9.15021 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.002957 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.487118 B = 9465.941512 C =10199.921634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.618 5.618 3 C -0.267 4.267 4 H 0.068 0.932 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.966 3.034 8 H -0.271 1.271 9 H -0.292 1.292 10 H -0.287 1.287 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.711 5.711 14 C 0.497 3.503 15 O -0.592 6.592 16 C -0.142 4.142 17 C 0.148 3.852 18 H 0.071 0.929 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.129 4.129 22 C 0.505 3.495 23 O -0.626 6.626 24 N -0.710 5.710 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.033 0.967 28 H 0.250 0.750 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.418 0.582 34 H 0.121 0.879 35 H 0.153 0.847 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 -26.249 -5.896 28.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.397 4.397 4 H 0.086 0.914 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.794 3.206 8 H -0.195 1.195 9 H -0.219 1.219 10 H -0.214 1.214 11 C 0.020 3.980 12 C -0.013 4.013 13 N -0.363 5.363 14 C 0.286 3.714 15 O -0.473 6.473 16 C -0.182 4.182 17 C 0.043 3.957 18 H 0.089 0.911 19 C -0.163 4.163 20 C -0.157 4.157 21 C -0.169 4.169 22 C 0.294 3.706 23 O -0.510 6.510 24 N -0.360 5.360 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.255 0.745 34 H 0.139 0.861 35 H 0.171 0.829 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 9.031 -25.553 -6.826 27.948 hybrid contribution -0.079 2.100 0.220 2.113 sum 8.952 -23.453 -6.606 25.958 Atomic orbital electron populations 1.20598 0.82545 0.95995 0.98000 1.44041 1.02283 1.01625 1.86162 1.19506 0.98438 0.86914 1.34834 0.91442 1.25759 0.98583 1.01785 0.98401 1.70218 1.20635 1.27665 1.39616 0.85226 0.77920 0.80179 0.77249 1.19514 1.21859 1.21364 1.20961 0.96804 0.87556 0.92678 1.21806 0.94792 0.84488 1.00199 1.45898 1.57439 1.23489 1.09481 1.21592 0.78971 0.87810 0.83073 1.90720 1.56688 1.67025 1.32897 1.22212 1.03117 0.94109 0.98775 1.21027 0.93411 0.89764 0.91491 0.91078 1.21999 1.02945 0.93358 0.97986 1.21681 0.96875 1.00484 0.96644 1.21711 1.01978 0.88517 1.04692 1.21155 0.78751 0.93393 0.77291 1.90726 1.53864 1.52346 1.54039 1.45961 1.32179 1.11488 1.46359 0.96950 0.96962 0.94883 0.94113 0.91389 0.92403 0.94970 0.93864 0.74512 0.86076 0.82905 0.89151 0.86433 0.91678 0.87277 0.88277 0.86393 0.77632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.53 8.98 127.77 1.15 9.68 16 2 N -0.62 -30.60 2.92 -726.94 -2.12 -32.72 16 3 C -0.27 -14.74 9.65 84.03 0.81 -13.93 16 4 H 0.07 3.67 7.86 -2.91 -0.02 3.64 16 5 C -0.05 -2.82 5.10 84.86 0.43 -2.39 16 6 N -0.93 -55.34 10.71 21.65 0.23 -55.11 16 7 Si 0.97 45.85 29.57 68.60 2.03 47.88 16 8 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 9 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 C 0.15 5.42 5.76 86.38 0.50 5.92 16 12 C 0.11 3.95 6.00 86.38 0.52 4.47 16 13 N -0.71 -16.72 5.56 -463.07 -2.57 -19.29 16 14 C 0.50 11.82 7.47 87.66 0.66 12.47 16 15 O -0.59 -20.39 14.53 -3.03 -0.04 -20.43 16 16 C -0.14 -1.60 5.35 29.85 0.16 -1.44 16 17 C 0.15 2.05 2.65 45.10 0.12 2.17 16 18 H 0.07 1.20 7.95 -2.39 -0.02 1.18 16 19 C -0.13 -0.67 5.28 30.66 0.16 -0.51 16 20 C -0.12 -0.82 6.04 30.71 0.19 -0.63 16 21 C -0.13 -1.71 6.02 29.71 0.18 -1.53 16 22 C 0.50 12.49 7.71 87.71 0.68 13.16 16 23 O -0.63 -22.61 17.78 -3.00 -0.05 -22.66 16 24 N -0.71 -16.26 5.00 -446.64 -2.24 -18.50 16 25 H 0.01 0.65 7.34 -2.38 -0.02 0.63 16 26 H 0.01 0.63 7.34 -2.39 -0.02 0.62 16 27 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 28 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.07 2.16 8.07 -2.38 -0.02 2.14 16 30 H 0.06 2.08 8.04 -2.39 -0.02 2.06 16 31 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.42 6.46 8.47 -92.71 -0.79 5.68 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.09 0.30 8.10 -2.39 -0.02 0.29 16 37 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 39 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.39 11.49 6.90 -92.71 -0.64 10.85 16 Total: -1.00 -81.93 343.11 0.37 -81.56 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -0.40 Total: 11.82 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 5.54 Total: 27.45 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -6.70 Total: -125.62 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.10 Total: -43.09 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -81.93 0.37 -81.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753054193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.074 kcal (2) G-P(sol) polarization free energy of solvation -81.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds