Wall clock time and date at job start Tue Mar 31 2020 02:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21287 * 120.00015 * 2 1 4 4 N 1.34773 * 120.00130 * 180.02562 * 2 1 3 5 5 C 1.46494 * 119.99994 * 5.54152 * 4 2 1 6 6 C 1.46501 * 120.00160 * 185.54230 * 4 2 1 7 7 C 1.50700 * 109.47153 * 89.99647 * 6 4 2 8 8 O 1.21275 * 120.00315 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99683 * 179.97438 * 7 6 4 10 10 C 1.46498 * 119.99493 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46924 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46965 * 180.02562 * 11 10 9 13 13 C 1.36939 * 119.99561 * 269.99638 * 12 11 10 14 14 H 1.08005 * 119.99436 * 144.72641 * 13 12 11 15 15 C 1.38809 * 120.00518 * 324.72918 * 13 12 11 16 16 N 1.31624 * 119.99995 * 338.79530 * 15 13 12 17 17 Si 1.86799 * 120.00362 * 158.79807 * 15 13 12 18 18 H 1.48502 * 109.47006 * 59.99885 * 17 15 13 19 19 H 1.48497 * 109.47190 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47237 * 299.99936 * 17 15 13 21 21 C 1.46496 * 120.00488 * 90.00182 * 12 11 10 22 22 C 1.52994 * 117.50252 * 183.18083 * 21 12 11 23 23 C 1.52999 * 117.50231 * 114.51721 * 21 12 11 24 24 H 1.08998 * 109.47257 * 180.94539 * 1 2 3 25 25 H 1.08996 * 109.47437 * 300.94853 * 1 2 3 26 26 H 1.09001 * 109.47001 * 60.94709 * 1 2 3 27 27 H 1.09000 * 109.47019 * 274.03230 * 5 4 2 28 28 H 1.08995 * 109.47273 * 34.03252 * 5 4 2 29 29 H 1.09007 * 109.47437 * 154.03343 * 5 4 2 30 30 H 1.09004 * 109.47038 * 330.00194 * 6 4 2 31 31 H 1.09000 * 109.47595 * 210.00076 * 6 4 2 32 32 H 0.96990 * 120.00466 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.47404 * 60.00306 * 10 9 7 34 34 H 1.09000 * 109.47374 * 299.99837 * 10 9 7 35 35 H 1.09004 * 109.47115 * 60.00333 * 11 10 9 36 36 H 1.08993 * 109.47210 * 299.99957 * 11 10 9 37 37 H 0.96996 * 120.00358 * 185.03022 * 16 15 13 38 38 H 1.09002 * 115.54625 * 328.85454 * 21 12 11 39 39 H 1.08999 * 117.49636 * 359.97438 * 22 21 12 40 40 H 1.08998 * 117.50282 * 145.01899 * 22 21 12 41 41 H 1.08994 * 117.50197 * 214.98395 * 23 21 12 42 42 H 1.09007 * 117.49529 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4535 -2.4328 -0.1236 6 6 3.6407 -1.1702 0.1220 7 6 4.0224 -1.2404 1.5782 8 8 3.1601 -1.2841 2.4297 9 7 5.3223 -1.2556 1.9340 10 6 5.6934 -1.3244 3.3496 11 6 7.2181 -1.3275 3.4775 12 7 7.5892 -1.3969 4.8931 13 6 7.7601 -0.2448 5.6133 14 1 7.4732 -0.2111 6.6541 15 6 8.3018 0.8796 5.0060 16 7 9.0232 0.7537 3.9122 17 14 8.0073 2.5716 5.7408 18 1 8.5511 2.6128 7.1220 19 1 8.6883 3.5972 4.9104 20 1 6.5490 2.8496 5.7744 21 6 7.7775 -2.6987 5.5381 22 6 8.0912 -2.7065 7.0355 23 6 9.1857 -3.0502 6.0221 24 1 -0.3634 -1.0275 0.0170 25 1 -0.3634 0.5285 0.8813 26 1 -0.3633 0.4991 -0.8984 27 1 1.1250 -2.7605 0.8627 28 1 0.5854 -2.2919 -0.7675 29 1 2.1090 -3.1879 -0.5576 30 1 4.0439 -0.2569 -0.3156 31 1 4.0476 -2.0348 -0.4024 32 1 6.0121 -1.2210 1.2530 33 1 5.2899 -2.2376 3.7870 34 1 5.2869 -0.4598 3.8742 35 1 7.6212 -0.4140 3.0403 36 1 7.6250 -2.1918 2.9529 37 1 9.4622 1.5290 3.5288 38 1 7.1622 -3.5097 5.1485 39 1 8.1579 -1.7429 7.5407 40 1 7.6826 -3.5227 7.6311 41 1 9.4967 -4.0925 5.9514 42 1 9.9722 -2.3130 5.8602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753151332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:12 Heat of formation + Delta-G solvation = -14.386714 kcal Electronic energy + Delta-G solvation = -22522.985727 eV Core-core repulsion = 19119.268752 eV Total energy + Delta-G solvation = -3403.716975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.19715 -38.74557 -37.09984 -35.55582 -34.64662 -33.20190 -31.17111 -30.56666 -28.53872 -27.30349 -25.93257 -24.26738 -21.84817 -21.29928 -20.52678 -19.78178 -19.26645 -17.26122 -17.16410 -16.44481 -16.16197 -15.55651 -15.23314 -15.02699 -14.87175 -14.42266 -13.91916 -13.61503 -13.39161 -13.08845 -13.04021 -12.97184 -12.60581 -12.29630 -12.20311 -11.93180 -11.74780 -11.52547 -10.97460 -10.76091 -10.74074 -10.30616 -10.13375 -9.97043 -9.91495 -9.81801 -9.63950 -9.31375 -8.71511 -8.58602 -8.47480 -6.57537 -5.89396 -3.43291 2.48445 2.82535 2.93611 3.34760 3.41155 3.45333 3.68449 4.41660 4.48412 4.82264 4.90807 4.94449 5.00993 5.07569 5.21133 5.26311 5.31478 5.33818 5.36242 5.52582 5.68324 5.88600 6.02502 6.10927 6.15630 6.22088 6.29999 6.48505 6.51976 6.60619 6.86991 6.98956 7.06841 7.20015 7.20391 7.54462 7.78279 7.90049 8.07919 8.43752 8.57996 9.08948 9.71639 10.26260 11.12443 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.004064 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.817296 B = 6887.295962 C = 7846.700890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.517 3.483 3 O -0.543 6.543 4 N -0.602 5.602 5 C 0.080 3.920 6 C 0.093 3.907 7 C 0.491 3.509 8 O -0.542 6.542 9 N -0.718 5.718 10 C 0.101 3.899 11 C 0.136 3.864 12 N -0.547 5.547 13 C -0.264 4.264 14 H 0.067 0.933 15 C 0.015 3.985 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.120 3.880 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.398 0.602 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.031 0.969 37 H 0.258 0.742 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 -8.299 -10.541 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.307 3.693 3 O -0.420 6.420 4 N -0.336 5.336 5 C -0.063 4.063 6 C -0.034 4.034 7 C 0.274 3.726 8 O -0.419 6.419 9 N -0.370 5.370 10 C -0.025 4.025 11 C 0.009 3.991 12 N -0.264 5.264 13 C -0.393 4.393 14 H 0.085 0.915 15 C -0.185 4.185 16 N -0.532 5.532 17 Si 0.730 3.270 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.206 1.206 21 C 0.011 3.989 22 C -0.233 4.233 23 C -0.261 4.261 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.231 0.769 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.039 -7.603 -10.062 17.435 hybrid contribution 0.369 0.743 0.233 0.862 sum -11.669 -6.860 -9.829 16.728 Atomic orbital electron populations 1.21943 0.91588 1.04539 1.05158 1.20801 0.90745 0.82921 0.74874 1.90733 1.70642 1.31111 1.49469 1.47428 1.06011 1.07038 1.73114 1.21860 0.97174 0.85042 1.02191 1.21357 0.81842 1.05563 0.94590 1.21065 0.83184 0.76878 0.91440 1.90667 1.49272 1.49650 1.52291 1.46061 1.06605 1.74055 1.10265 1.22312 1.00218 1.01044 0.78906 1.21146 0.88753 1.03109 0.86069 1.43219 1.76457 0.99787 1.06956 1.19035 1.36637 0.87802 0.95816 0.91511 1.25170 0.96407 0.99182 0.97780 1.69825 1.30974 1.29770 1.22611 0.86392 0.78384 0.83639 0.78594 1.20613 1.21463 1.20633 1.21212 0.94916 0.89681 0.93111 1.23036 1.04800 1.02130 0.93379 1.23357 0.95739 0.99703 1.07291 0.90111 0.88586 0.88957 0.91972 0.90762 0.90851 0.86884 0.87648 0.76870 0.93323 0.91758 0.87402 0.95083 0.93166 0.89563 0.88416 0.90716 0.91208 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.96 36.00 0.36 -1.18 16 2 C 0.52 7.12 7.77 -10.99 -0.09 7.03 16 3 O -0.54 -9.97 16.65 5.55 0.09 -9.88 16 4 N -0.60 -7.19 2.36 -182.96 -0.43 -7.62 16 5 C 0.08 0.62 9.78 59.84 0.59 1.20 16 6 C 0.09 1.14 5.97 -5.19 -0.03 1.11 16 7 C 0.49 8.24 7.90 -10.98 -0.09 8.15 16 8 O -0.54 -11.31 16.43 5.56 0.09 -11.22 16 9 N -0.72 -11.95 5.56 -60.29 -0.33 -12.29 16 10 C 0.10 2.06 6.00 -4.04 -0.02 2.03 16 11 C 0.14 3.01 5.45 -4.04 -0.02 2.99 16 12 N -0.55 -13.27 2.78 -165.66 -0.46 -13.73 16 13 C -0.26 -7.03 8.63 -15.06 -0.13 -7.16 16 14 H 0.07 1.80 6.55 -52.48 -0.34 1.45 16 15 C 0.01 0.40 4.98 -17.43 -0.09 0.32 16 16 N -0.89 -24.65 11.29 55.49 0.63 -24.02 16 17 Si 0.90 21.72 29.61 -169.99 -5.03 16.69 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.12 2.54 6.56 -67.94 -0.45 2.09 16 22 C -0.20 -3.85 9.80 -26.70 -0.26 -4.11 16 23 C -0.22 -4.43 10.36 -26.69 -0.28 -4.70 16 24 H 0.08 0.51 5.68 -51.93 -0.29 0.21 16 25 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.37 6.49 -51.93 -0.34 0.03 16 29 H 0.07 0.43 7.85 -51.93 -0.41 0.02 16 30 H 0.11 1.43 7.35 -51.93 -0.38 1.05 16 31 H 0.11 0.86 7.86 -51.93 -0.41 0.45 16 32 H 0.40 5.44 8.47 -40.82 -0.35 5.10 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.11 2.69 5.34 -51.93 -0.28 2.41 16 36 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 38 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.10 2.11 6.38 -51.93 -0.33 1.78 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -34.73 350.78 -7.16 -41.88 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.49 Total: 7.12 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.51 Total: 7.77 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.60 Total: -57.66 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.18 Total: -21.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.73 -7.16 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753151332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.498 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds