Wall clock time and date at job start Tue Mar 31 2020 02:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21287 * 120.00015 * 2 1 4 4 N 1.34773 * 120.00130 * 180.02562 * 2 1 3 5 5 C 1.46494 * 119.99994 * 5.54152 * 4 2 1 6 6 C 1.46501 * 120.00160 * 185.54230 * 4 2 1 7 7 C 1.50700 * 109.47153 * 89.99647 * 6 4 2 8 8 O 1.21275 * 120.00315 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99683 * 179.97438 * 7 6 4 10 10 C 1.46498 * 119.99493 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46924 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46965 * 180.02562 * 11 10 9 13 13 C 1.36939 * 119.99561 * 269.99638 * 12 11 10 14 14 H 1.08005 * 119.99436 * 144.72641 * 13 12 11 15 15 C 1.38809 * 120.00518 * 324.72918 * 13 12 11 16 16 N 1.31624 * 119.99995 * 338.79530 * 15 13 12 17 17 Si 1.86799 * 120.00362 * 158.79807 * 15 13 12 18 18 H 1.48502 * 109.47006 * 59.99885 * 17 15 13 19 19 H 1.48497 * 109.47190 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47237 * 299.99936 * 17 15 13 21 21 C 1.46496 * 120.00488 * 90.00182 * 12 11 10 22 22 C 1.52994 * 117.50252 * 183.18083 * 21 12 11 23 23 C 1.52999 * 117.50231 * 114.51721 * 21 12 11 24 24 H 1.08998 * 109.47257 * 180.94539 * 1 2 3 25 25 H 1.08996 * 109.47437 * 300.94853 * 1 2 3 26 26 H 1.09001 * 109.47001 * 60.94709 * 1 2 3 27 27 H 1.09000 * 109.47019 * 274.03230 * 5 4 2 28 28 H 1.08995 * 109.47273 * 34.03252 * 5 4 2 29 29 H 1.09007 * 109.47437 * 154.03343 * 5 4 2 30 30 H 1.09004 * 109.47038 * 330.00194 * 6 4 2 31 31 H 1.09000 * 109.47595 * 210.00076 * 6 4 2 32 32 H 0.96990 * 120.00466 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.47404 * 60.00306 * 10 9 7 34 34 H 1.09000 * 109.47374 * 299.99837 * 10 9 7 35 35 H 1.09004 * 109.47115 * 60.00333 * 11 10 9 36 36 H 1.08993 * 109.47210 * 299.99957 * 11 10 9 37 37 H 0.96996 * 120.00358 * 185.03022 * 16 15 13 38 38 H 1.09002 * 115.54625 * 328.85454 * 21 12 11 39 39 H 1.08999 * 117.49636 * 359.97438 * 22 21 12 40 40 H 1.08998 * 117.50282 * 145.01899 * 22 21 12 41 41 H 1.08994 * 117.50197 * 214.98395 * 23 21 12 42 42 H 1.09007 * 117.49529 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4535 -2.4328 -0.1236 6 6 3.6407 -1.1702 0.1220 7 6 4.0224 -1.2404 1.5782 8 8 3.1601 -1.2841 2.4297 9 7 5.3223 -1.2556 1.9340 10 6 5.6934 -1.3244 3.3496 11 6 7.2181 -1.3275 3.4775 12 7 7.5892 -1.3969 4.8931 13 6 7.7601 -0.2448 5.6133 14 1 7.4732 -0.2111 6.6541 15 6 8.3018 0.8796 5.0060 16 7 9.0232 0.7537 3.9122 17 14 8.0073 2.5716 5.7408 18 1 8.5511 2.6128 7.1220 19 1 8.6883 3.5972 4.9104 20 1 6.5490 2.8496 5.7744 21 6 7.7775 -2.6987 5.5381 22 6 8.0912 -2.7065 7.0355 23 6 9.1857 -3.0502 6.0221 24 1 -0.3634 -1.0275 0.0170 25 1 -0.3634 0.5285 0.8813 26 1 -0.3633 0.4991 -0.8984 27 1 1.1250 -2.7605 0.8627 28 1 0.5854 -2.2919 -0.7675 29 1 2.1090 -3.1879 -0.5576 30 1 4.0439 -0.2569 -0.3156 31 1 4.0476 -2.0348 -0.4024 32 1 6.0121 -1.2210 1.2530 33 1 5.2899 -2.2376 3.7870 34 1 5.2869 -0.4598 3.8742 35 1 7.6212 -0.4140 3.0403 36 1 7.6250 -2.1918 2.9529 37 1 9.4622 1.5290 3.5288 38 1 7.1622 -3.5097 5.1485 39 1 8.1579 -1.7429 7.5407 40 1 7.6826 -3.5227 7.6311 41 1 9.4967 -4.0925 5.9514 42 1 9.9722 -2.3130 5.8602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753151332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:12 Heat of formation + Delta-G solvation = -39.009744 kcal Electronic energy + Delta-G solvation = -22524.053462 eV Core-core repulsion = 19119.268752 eV Total energy + Delta-G solvation = -3404.784710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32931 -40.06251 -38.82792 -36.65334 -36.17104 -34.99148 -32.80679 -31.74311 -29.82585 -28.47898 -27.01718 -26.05729 -23.50492 -22.90332 -21.88401 -21.56114 -20.31668 -18.66682 -18.14098 -17.93376 -17.51461 -17.30585 -16.68438 -16.35635 -16.31517 -15.95015 -15.68363 -14.74790 -14.58999 -14.50612 -14.31635 -13.92216 -13.78494 -13.70274 -13.35110 -13.15564 -13.03670 -12.88915 -12.69705 -12.55266 -12.51585 -12.15044 -11.93035 -11.72168 -11.38783 -11.25397 -11.00542 -10.91955 -10.54882 -10.06312 -9.75139 -8.51706 -7.92456 -5.48712 1.38363 1.43680 1.44214 1.48569 1.60653 1.93262 2.34674 2.49080 3.10960 3.38430 3.53504 3.68922 3.85004 4.16404 4.28610 4.30460 4.34924 4.37681 4.39755 4.43174 4.50949 4.59837 4.60686 4.71574 4.77216 4.93215 4.93779 5.03424 5.06472 5.21309 5.31698 5.33560 5.45953 5.54059 5.64180 5.76673 6.30620 6.41553 6.58100 7.07642 7.09468 7.25452 7.79127 8.27225 9.05432 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.004064 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.817296 B = 6887.295962 C = 7846.700890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.502 3.498 3 O -0.603 6.603 4 N -0.603 5.603 5 C 0.072 3.928 6 C 0.098 3.902 7 C 0.486 3.514 8 O -0.587 6.587 9 N -0.711 5.711 10 C 0.123 3.877 11 C 0.144 3.856 12 N -0.566 5.566 13 C -0.268 4.268 14 H 0.058 0.942 15 C -0.027 4.027 16 N -0.911 5.911 17 Si 0.949 3.051 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.290 1.290 21 C 0.099 3.901 22 C -0.186 4.186 23 C -0.210 4.210 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.156 0.844 32 H 0.414 0.586 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.255 0.745 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 -10.520 -11.608 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.293 3.707 3 O -0.484 6.484 4 N -0.335 5.335 5 C -0.069 4.069 6 C -0.029 4.029 7 C 0.273 3.727 8 O -0.467 6.467 9 N -0.364 5.364 10 C -0.003 4.003 11 C 0.017 3.983 12 N -0.284 5.284 13 C -0.398 4.398 14 H 0.076 0.924 15 C -0.225 4.225 16 N -0.554 5.554 17 Si 0.778 3.222 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.216 1.216 21 C -0.009 4.009 22 C -0.224 4.224 23 C -0.250 4.250 24 H 0.129 0.871 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.174 0.826 32 H 0.250 0.750 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.035 -9.882 -11.148 19.795 hybrid contribution 0.658 1.339 0.589 1.604 sum -12.378 -8.543 -10.559 18.376 Atomic orbital electron populations 1.21984 0.88032 1.06741 1.05770 1.21751 0.92709 0.82575 0.73693 1.90698 1.72116 1.33263 1.52325 1.47690 1.06052 1.08149 1.71618 1.22170 0.98612 0.83591 1.02497 1.21455 0.82748 1.07526 0.91153 1.21971 0.82324 0.75217 0.93227 1.90643 1.50375 1.51604 1.54069 1.45919 1.07522 1.73872 1.09054 1.21767 0.98801 0.98949 0.80811 1.20998 0.89421 1.02512 0.85379 1.43419 1.77010 1.00399 1.07568 1.19162 1.35741 0.89173 0.95716 0.92422 1.25687 0.96827 1.01506 0.98506 1.69924 1.31965 1.30012 1.23548 0.85626 0.77431 0.80812 0.78366 1.19794 1.21369 1.21643 1.21526 0.96194 0.89037 0.94140 1.23050 1.04319 1.02176 0.92836 1.23261 0.94184 1.00656 1.06922 0.87069 0.89228 0.87013 0.93129 0.87580 0.88363 0.87405 0.82613 0.74971 0.93297 0.96132 0.90101 0.93114 0.93544 0.86986 0.90882 0.87138 0.87702 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.96 71.23 0.71 -1.94 16 2 C 0.50 13.42 7.77 87.66 0.68 14.10 16 3 O -0.60 -22.62 16.65 -3.05 -0.05 -22.67 16 4 N -0.60 -13.24 2.36 -851.14 -2.01 -15.25 16 5 C 0.07 0.87 9.78 127.77 1.25 2.12 16 6 C 0.10 2.22 5.97 85.63 0.51 2.73 16 7 C 0.49 16.09 7.90 87.66 0.69 16.78 16 8 O -0.59 -24.72 16.43 -3.01 -0.05 -24.76 16 9 N -0.71 -23.40 5.56 -463.06 -2.57 -25.97 16 10 C 0.12 5.12 6.00 86.38 0.52 5.63 16 11 C 0.14 6.39 5.45 86.38 0.47 6.86 16 12 N -0.57 -27.61 2.78 -678.03 -1.88 -29.50 16 13 C -0.27 -14.58 8.63 84.03 0.72 -13.86 16 14 H 0.06 3.18 6.55 -2.91 -0.02 3.17 16 15 C -0.03 -1.51 4.98 84.86 0.42 -1.08 16 16 N -0.91 -51.55 11.29 21.65 0.24 -51.31 16 17 Si 0.95 45.67 29.61 68.60 2.03 47.70 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 21 C 0.10 4.05 6.56 44.99 0.30 4.35 16 22 C -0.19 -7.03 9.80 30.62 0.30 -6.73 16 23 C -0.21 -8.09 10.36 30.62 0.32 -7.77 16 24 H 0.11 1.03 5.68 -2.39 -0.01 1.02 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 0.60 6.49 -2.39 -0.02 0.59 16 29 H 0.10 0.72 7.85 -2.38 -0.02 0.70 16 30 H 0.11 2.64 7.35 -2.39 -0.02 2.63 16 31 H 0.16 1.92 7.86 -2.39 -0.02 1.90 16 32 H 0.41 10.92 8.47 -92.72 -0.79 10.13 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 4.12 5.34 -2.39 -0.01 4.11 16 36 H 0.05 2.02 8.07 -2.39 -0.02 2.00 16 37 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 38 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 39 H 0.07 3.14 6.38 -2.39 -0.02 3.13 16 40 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -79.41 350.78 2.84 -76.57 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.24 Total: 24.00 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.89 Total: 21.19 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -6.22 Total: -122.03 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -0.10 Total: -47.43 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -79.41 2.84 -76.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753151332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.557 kcal (2) G-P(sol) polarization free energy of solvation -79.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds