Wall clock time and date at job start Tue Mar 31 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47179 * 2 1 4 4 C 1.46756 * 124.35062 * 90.00271 * 3 2 1 5 5 C 1.54489 * 105.47458 * 163.00512 * 4 3 2 6 6 H 1.09000 * 110.96746 * 267.25699 * 5 4 3 7 7 C 1.50698 * 110.97065 * 143.53192 * 5 4 3 8 8 O 1.21289 * 120.00113 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00135 * 179.97438 * 7 5 4 10 10 C 1.46504 * 120.00076 * 180.02562 * 9 7 5 11 11 H 1.08993 * 109.46946 * 325.00053 * 10 9 7 12 12 C 1.52994 * 109.47051 * 85.00100 * 10 9 7 13 13 C 1.53000 * 109.46766 * 205.00033 * 10 9 7 14 14 N 1.46499 * 109.47100 * 55.00187 * 13 10 9 15 15 C 1.36939 * 119.99547 * 179.97438 * 14 13 10 16 16 H 1.07993 * 120.00716 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99459 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00154 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99635 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99668 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99848 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99841 * 19 17 15 23 23 C 1.54622 * 101.76141 * 25.41397 * 5 4 3 24 24 C 1.34418 * 124.34907 * 270.02535 * 3 2 1 25 25 O 1.21286 * 124.94148 * 0.38572 * 24 3 2 26 26 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46967 * 300.00127 * 1 2 3 28 28 H 1.08993 * 109.47332 * 59.99747 * 1 2 3 29 29 H 1.09004 * 109.46967 * 239.99873 * 2 1 3 30 30 H 1.09001 * 109.47370 * 119.99918 * 2 1 3 31 31 H 1.08996 * 110.24862 * 44.00512 * 4 3 2 32 32 H 1.09001 * 110.32226 * 282.04382 * 4 3 2 33 33 H 0.96996 * 119.99965 * 0.02562 * 9 7 5 34 34 H 1.08996 * 109.47331 * 299.99827 * 12 10 9 35 35 H 1.09000 * 109.47278 * 59.99774 * 12 10 9 36 36 H 1.08998 * 109.47088 * 179.97438 * 12 10 9 37 37 H 1.08994 * 109.47445 * 294.99859 * 13 10 9 38 38 H 1.08999 * 109.46641 * 174.99988 * 13 10 9 39 39 H 0.96998 * 120.00185 * 359.97438 * 14 13 10 40 40 H 0.96993 * 120.00007 * 0.02562 * 18 17 15 41 41 H 1.09003 * 110.48565 * 93.88695 * 23 5 4 42 42 H 1.09004 * 110.48532 * 216.52473 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2116 5 6 3.1740 3.3444 0.7485 6 1 4.2328 3.1041 0.8449 7 6 2.8368 4.5990 1.5122 8 8 1.9708 4.5779 2.3612 9 7 3.4982 5.7443 1.2527 10 6 3.1707 6.9638 1.9956 11 1 2.1015 6.9848 2.2061 12 6 3.9503 6.9839 3.3119 13 6 3.5501 8.1876 1.1594 14 7 2.8958 8.1071 -0.1489 15 6 3.0888 9.0989 -1.0731 16 1 3.7230 9.9407 -0.8375 17 6 2.4691 9.0223 -2.3129 18 7 1.6966 7.9962 -2.6003 19 14 2.7318 10.3757 -3.5734 20 1 1.6951 11.4243 -3.3973 21 1 2.6313 9.8050 -4.9407 22 1 4.0779 10.9737 -3.3845 23 6 2.7687 3.4756 -0.7379 24 6 2.2707 2.0964 -1.1098 25 8 2.1209 1.6944 -2.2442 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.8327 1.5532 1.9381 32 1 1.3644 2.5305 1.6446 33 1 4.1910 5.7611 0.5740 34 1 3.6800 6.1120 3.9076 35 1 5.0195 6.9628 3.1013 36 1 3.7070 7.8914 3.8644 37 1 4.6313 8.2141 1.0238 38 1 3.2260 9.0929 1.6726 39 1 2.3258 7.3512 -0.3604 40 1 1.5599 7.2937 -1.9457 41 1 1.9735 4.2122 -0.8528 42 1 3.6317 3.7465 -1.3462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754269198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:40 Heat of formation + Delta-G solvation = -89.775498 kcal Electronic energy + Delta-G solvation = -22948.052591 eV Core-core repulsion = 19541.066513 eV Total energy + Delta-G solvation = -3406.986078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95360 -40.52210 -38.04123 -37.35507 -35.74353 -35.00467 -33.02070 -31.57435 -30.42998 -28.81335 -27.14598 -25.32273 -24.63417 -23.91402 -22.07364 -21.27992 -20.45059 -19.39321 -18.75543 -17.84757 -17.39932 -17.14549 -16.54749 -16.15542 -16.03428 -15.73681 -15.31098 -15.11378 -14.90955 -14.66336 -14.47337 -14.30710 -13.97286 -13.78664 -13.42874 -13.28982 -12.98435 -12.84826 -12.66350 -12.59043 -12.55920 -12.42939 -12.04583 -11.96468 -11.86029 -11.27302 -11.20743 -10.97354 -10.79340 -10.11858 -9.82411 -9.11586 -8.37538 -5.33141 1.38656 1.51150 1.59686 1.69410 1.83238 1.84008 2.19049 2.71754 3.13334 3.29947 3.42209 3.62142 3.77035 3.80960 3.92500 4.07560 4.13066 4.21152 4.24456 4.42559 4.43806 4.49663 4.54511 4.69709 4.76829 4.77154 4.80581 4.88590 4.89369 4.90864 5.07215 5.22256 5.28453 5.50834 5.52471 5.61290 5.95897 6.49591 6.50125 7.00734 7.08499 7.16254 7.99461 8.09800 9.13564 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014972 B = 0.004769 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.730003 B = 5869.547734 C = 7371.487536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.612 5.612 4 C 0.120 3.880 5 C -0.108 4.108 6 H 0.155 0.845 7 C 0.527 3.473 8 O -0.572 6.572 9 N -0.705 5.705 10 C 0.139 3.861 11 H 0.060 0.940 12 C -0.145 4.145 13 C 0.150 3.850 14 N -0.754 5.754 15 C -0.333 4.333 16 H 0.070 0.930 17 C -0.101 4.101 18 N -0.974 5.974 19 Si 1.127 2.873 20 H -0.289 1.289 21 H -0.297 1.297 22 H -0.269 1.269 23 C -0.142 4.142 24 C 0.514 3.486 25 O -0.576 6.576 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.410 0.590 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.361 0.639 40 H 0.243 0.757 41 H 0.086 0.914 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.425 -13.705 12.775 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.345 5.345 4 C -0.002 4.002 5 C -0.129 4.129 6 H 0.173 0.827 7 C 0.313 3.687 8 O -0.452 6.452 9 N -0.356 5.356 10 C 0.034 3.966 11 H 0.078 0.922 12 C -0.204 4.204 13 C 0.023 3.977 14 N -0.399 5.399 15 C -0.464 4.464 16 H 0.088 0.912 17 C -0.292 4.292 18 N -0.622 5.622 19 Si 0.953 3.047 20 H -0.216 1.216 21 H -0.223 1.223 22 H -0.194 1.194 23 C -0.183 4.183 24 C 0.302 3.698 25 O -0.456 6.456 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.246 0.754 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.193 0.807 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.496 -13.281 11.380 18.333 hybrid contribution -0.007 -0.431 0.854 0.957 sum 5.489 -13.712 12.234 19.178 Atomic orbital electron populations 1.22150 0.95803 1.03400 1.01281 1.21599 0.94480 0.79859 1.04482 1.48482 1.64756 1.14564 1.06745 1.22072 1.00264 0.91204 0.86686 1.22232 1.04739 0.92863 0.93086 0.82727 1.20415 0.80588 0.85112 0.82565 1.90682 1.33169 1.85794 1.35543 1.45972 1.40060 1.08779 1.40755 1.21111 0.99712 0.83361 0.92390 0.92169 1.21988 1.00649 1.02866 0.94852 1.21078 0.96265 0.95306 0.85047 1.42532 1.58202 1.25778 1.13430 1.20393 1.27071 1.02202 0.96783 0.91245 1.27101 0.97599 1.04316 1.00222 1.70989 1.42017 1.11852 1.37373 0.82619 0.76428 0.72236 0.73423 1.21578 1.22342 1.19425 1.22266 1.04259 0.95256 0.96496 1.21035 0.76516 0.87845 0.84364 1.90700 1.55837 1.76054 1.23007 0.89034 0.92082 0.95216 0.90806 0.86506 0.86097 0.90640 0.75373 0.92247 0.90765 0.90522 0.94197 0.94842 0.80695 0.94665 0.89536 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 10.24 71.98 0.74 -2.31 16 2 C 0.12 2.03 6.65 86.38 0.57 2.61 16 3 N -0.61 -13.71 2.93 -818.00 -2.40 -16.11 16 4 C 0.12 2.25 6.71 86.84 0.58 2.83 16 5 C -0.11 -2.16 3.54 -10.48 -0.04 -2.20 16 6 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 7 C 0.53 14.08 7.02 87.66 0.62 14.70 16 8 O -0.57 -18.88 15.17 -3.06 -0.05 -18.93 16 9 N -0.71 -19.11 4.52 -442.54 -2.00 -21.10 16 10 C 0.14 4.17 2.73 44.99 0.12 4.30 16 11 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 12 C -0.14 -3.26 9.48 71.98 0.68 -2.58 16 13 C 0.15 5.41 5.82 86.38 0.50 5.92 16 14 N -0.75 -36.04 5.43 -343.46 -1.87 -37.91 16 15 C -0.33 -18.11 9.99 84.03 0.84 -17.27 16 16 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 17 C -0.10 -5.75 5.50 84.86 0.47 -5.29 16 18 N -0.97 -60.69 13.70 21.65 0.30 -60.39 16 19 Si 1.13 51.55 29.92 68.60 2.05 53.60 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 C -0.14 -3.81 6.41 30.58 0.20 -3.62 16 24 C 0.51 15.52 8.02 87.90 0.71 16.23 16 25 O -0.58 -22.54 17.60 -3.05 -0.05 -22.59 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 1.44 7.93 -2.38 -0.02 1.43 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.73 6.96 -2.39 -0.02 1.72 16 33 H 0.41 10.39 8.60 -92.71 -0.80 9.60 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.36 18.21 6.17 -92.71 -0.57 17.64 16 40 H 0.24 15.11 6.77 -92.71 -0.63 14.48 16 41 H 0.09 2.84 7.89 -2.39 -0.02 2.82 16 42 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 Total: -1.00 -76.83 350.13 1.77 -75.06 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.20 Total: 35.04 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.99 Total: 13.33 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -5.97 Total: -135.51 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.10 Total: -41.52 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -76.83 1.77 -75.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754269198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.712 kcal (2) G-P(sol) polarization free energy of solvation -76.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds