Wall clock time and date at job start Tue Mar 31 2020 02:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99881 * 2 1 4 4 N 1.34779 * 120.00056 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99982 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.47281 * 34.99868 * 5 4 2 7 7 C 1.53006 * 109.47101 * 274.99868 * 5 4 2 8 8 C 1.50697 * 109.47471 * 155.00324 * 5 4 2 9 9 O 1.21289 * 119.99767 * 359.97438 * 8 5 4 10 10 N 1.34770 * 120.00240 * 179.97438 * 8 5 4 11 11 C 1.46500 * 120.00272 * 179.97438 * 10 8 5 12 12 C 1.52999 * 110.77887 * 56.76197 * 11 10 8 13 13 C 1.55151 * 110.72349 * 179.97438 * 11 10 8 14 14 C 1.54917 * 101.58025 * 82.86483 * 13 11 10 15 15 N 1.47421 * 104.83002 * 37.01304 * 14 13 11 16 16 C 1.36934 * 125.64880 * 155.91318 * 15 14 13 17 17 H 1.08003 * 120.00238 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99973 * 359.96416 * 16 15 14 19 19 N 1.31618 * 120.00207 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00168 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46925 * 60.00571 * 20 18 16 22 22 H 1.48504 * 109.47268 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47647 * 300.00713 * 20 18 16 24 24 C 1.47021 * 108.70450 * 335.86832 * 15 14 13 25 25 H 1.09005 * 109.46679 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47213 * 300.00099 * 1 2 3 27 27 H 1.09000 * 109.46931 * 60.00848 * 1 2 3 28 28 H 0.96996 * 119.99915 * 0.02562 * 4 2 1 29 29 H 1.08996 * 109.47535 * 180.02562 * 7 5 4 30 30 H 1.09001 * 109.47053 * 300.00140 * 7 5 4 31 31 H 1.09001 * 109.46615 * 59.99914 * 7 5 4 32 32 H 0.96999 * 120.00169 * 0.02562 * 10 8 5 33 33 H 1.08998 * 109.47698 * 183.23679 * 12 11 10 34 34 H 1.09001 * 109.47548 * 303.24157 * 12 11 10 35 35 H 1.09000 * 109.47333 * 63.23900 * 12 11 10 36 36 H 1.08998 * 111.00631 * 324.79320 * 13 11 10 37 37 H 1.09004 * 111.00792 * 200.93718 * 13 11 10 38 38 H 1.09002 * 110.36419 * 155.85111 * 14 13 11 39 39 H 1.09001 * 110.36569 * 278.17123 * 14 13 11 40 40 H 0.96992 * 120.00536 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.88310 * 120.48076 * 24 15 14 42 42 H 1.09002 * 109.88672 * 241.49116 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0090 -0.3252 0.5905 7 6 4.1565 -1.0418 -1.4358 8 6 4.1481 -2.4547 0.6019 9 8 3.3598 -3.2900 0.9918 10 7 5.4731 -2.6781 0.7061 11 6 5.9613 -3.9295 1.2907 12 6 5.4027 -5.1363 0.5340 13 6 7.5124 -3.9607 1.3043 14 6 7.8283 -3.1586 2.5915 15 7 6.7729 -3.5450 3.5454 16 6 6.8681 -3.4810 4.9100 17 1 6.0348 -3.7884 5.5245 18 6 8.0357 -3.0212 5.5035 19 7 9.0511 -2.6463 4.7547 20 14 8.1653 -2.9332 7.3649 21 1 7.9818 -4.2907 7.9385 22 1 9.5032 -2.4119 7.7438 23 1 7.1138 -2.0268 7.8921 24 6 5.6008 -4.0094 2.7891 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6959 -2.0072 0.0005 29 1 5.2464 -1.0422 -1.4355 30 1 3.7933 -1.8838 -2.0252 31 1 3.7932 -0.1105 -1.8704 32 1 6.1035 -2.0099 0.3946 33 1 5.7321 -6.0545 1.0204 34 1 4.3135 -5.0945 0.5365 35 1 5.7646 -5.1199 -0.4940 36 1 7.9210 -3.4640 0.4243 37 1 7.8820 -4.9833 1.3807 38 1 8.8092 -3.4340 2.9789 39 1 7.7855 -2.0880 2.3913 40 1 9.8668 -2.3247 5.1693 41 1 5.3690 -5.0394 3.0602 42 1 4.7448 -3.3688 3.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754664603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:34 Heat of formation + Delta-G solvation = -73.467077 kcal Electronic energy + Delta-G solvation = -23313.173454 eV Core-core repulsion = 19906.894562 eV Total energy + Delta-G solvation = -3406.278892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68483 -40.49223 -38.96403 -36.08815 -35.74673 -33.86619 -32.55119 -31.39549 -30.35995 -29.61958 -27.55380 -25.82057 -25.17925 -22.40263 -22.03604 -21.39344 -20.46193 -19.17846 -18.61461 -17.71714 -17.18876 -16.80755 -16.64188 -16.38142 -15.99685 -15.60105 -15.22814 -14.72487 -14.64200 -14.33264 -14.04751 -13.92945 -13.55534 -13.44871 -13.30804 -13.24418 -13.10950 -12.95152 -12.84002 -12.76545 -12.59642 -12.11034 -12.05137 -11.97722 -11.69366 -11.53567 -11.05786 -10.76327 -10.71222 -10.23473 -10.06391 -8.90282 -7.80197 -5.23836 1.44067 1.46683 1.48123 1.53360 1.60323 1.85180 2.43728 2.47742 3.28975 3.46716 3.68270 3.70804 3.89895 4.00576 4.05081 4.10658 4.18367 4.48702 4.63234 4.63718 4.66464 4.67781 4.77892 4.79988 4.86221 4.90861 5.02246 5.06411 5.09930 5.14878 5.30172 5.37136 5.41146 5.59227 5.65756 5.79574 6.30052 6.49249 6.51728 7.09148 7.15108 7.18980 7.76055 8.38934 9.20807 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.004403 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.088468 B = 6357.643238 C = 7053.139300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.507 3.493 3 O -0.597 6.597 4 N -0.707 5.707 5 C 0.124 3.876 6 H 0.095 0.905 7 C -0.147 4.147 8 C 0.515 3.485 9 O -0.560 6.560 10 N -0.696 5.696 11 C 0.171 3.829 12 C -0.141 4.141 13 C -0.127 4.127 14 C 0.153 3.847 15 N -0.624 5.624 16 C -0.246 4.246 17 H 0.070 0.930 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.977 3.023 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.284 1.284 24 C 0.136 3.864 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.417 0.583 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.411 0.589 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.076 0.924 39 H -0.008 1.008 40 H 0.249 0.751 41 H 0.023 0.977 42 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.619 -0.040 -15.961 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.296 3.704 3 O -0.478 6.478 4 N -0.361 5.361 5 C 0.015 3.985 6 H 0.113 0.887 7 C -0.206 4.206 8 C 0.301 3.699 9 O -0.439 6.439 10 N -0.348 5.348 11 C 0.084 3.916 12 C -0.200 4.200 13 C -0.166 4.166 14 C 0.028 3.972 15 N -0.350 5.350 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.252 4.252 19 N -0.592 5.592 20 Si 0.805 3.195 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.210 1.210 24 C 0.010 3.990 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.255 0.745 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.010 0.990 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -11.606 0.136 -15.519 19.380 hybrid contribution 0.342 0.251 1.412 1.475 sum -11.265 0.387 -14.107 18.057 Atomic orbital electron populations 1.21869 0.87696 1.06306 1.06209 1.21657 0.92451 0.82374 0.73889 1.90706 1.71982 1.32893 1.52201 1.45959 1.05549 1.10086 1.74530 1.20751 0.82882 0.95229 0.99686 0.88694 1.22056 1.02737 1.03434 0.92333 1.20736 0.82710 0.88343 0.78090 1.90632 1.55876 1.47325 1.50102 1.45842 1.06660 1.20445 1.61838 1.21197 0.94793 0.84787 0.90813 1.21980 1.02322 0.95336 1.00320 1.23210 0.92195 1.02153 0.99005 1.21780 0.94420 0.93829 0.87152 1.44779 1.12637 1.75895 1.01693 1.19337 0.99153 1.36852 0.82135 0.91242 1.25534 0.96013 1.01323 1.02320 1.69996 1.04872 1.50309 1.34063 0.85181 0.76570 0.77926 0.79810 1.20247 1.21362 1.21034 1.21700 0.89441 0.96217 0.91636 0.88051 0.88162 0.87125 0.74468 0.89301 0.90619 0.91392 0.75283 0.91535 0.91512 0.90169 0.87911 0.89737 0.90649 0.98989 0.94150 0.95865 0.97755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 10.39 71.24 0.74 -1.34 16 2 C 0.51 11.67 7.90 87.66 0.69 12.36 16 3 O -0.60 -19.10 16.76 -3.04 -0.05 -19.15 16 4 N -0.71 -15.58 4.95 -446.08 -2.21 -17.79 16 5 C 0.12 2.98 2.98 44.25 0.13 3.12 16 6 H 0.10 2.68 7.58 -2.39 -0.02 2.67 16 7 C -0.15 -2.62 9.38 71.98 0.68 -1.94 16 8 C 0.52 14.77 6.44 87.66 0.56 15.33 16 9 O -0.56 -18.83 12.82 -3.06 -0.04 -18.87 16 10 N -0.70 -19.76 5.04 -417.57 -2.10 -21.87 16 11 C 0.17 5.61 0.81 4.79 0.00 5.61 16 12 C -0.14 -3.86 8.43 71.98 0.61 -3.25 16 13 C -0.13 -4.21 6.07 31.99 0.19 -4.02 16 14 C 0.15 7.20 5.87 86.86 0.51 7.71 16 15 N -0.62 -32.77 3.39 -691.98 -2.35 -35.12 16 16 C -0.25 -14.27 10.27 84.03 0.86 -13.41 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 19 N -0.94 -55.57 10.09 21.65 0.22 -55.35 16 20 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 C 0.14 6.05 6.19 86.73 0.54 6.59 16 25 H 0.10 0.82 7.91 -2.38 -0.02 0.80 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.42 8.03 7.63 -92.71 -0.71 7.33 16 29 H 0.09 1.29 7.56 -2.39 -0.02 1.27 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.41 9.91 7.91 -92.71 -0.73 9.17 16 33 H 0.07 1.79 8.06 -2.39 -0.02 1.77 16 34 H 0.07 1.99 5.97 -2.39 -0.01 1.98 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.10 2.64 8.07 -2.39 -0.02 2.62 16 37 H 0.08 2.73 8.05 -2.38 -0.02 2.71 16 38 H 0.08 4.08 5.88 -2.39 -0.01 4.06 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.02 1.06 7.77 -2.39 -0.02 1.04 16 42 H 0.00 0.22 6.91 -2.39 -0.02 0.20 16 Total: -1.00 -75.20 338.45 1.07 -74.13 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -0.41 Total: 21.77 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 5.99 Total: 23.85 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -6.44 Total: -130.13 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.09 Total: -38.03 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -75.20 1.07 -74.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754664603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.660 kcal (2) G-P(sol) polarization free energy of solvation -75.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds