Wall clock time and date at job start Tue Mar 31 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36940 * 119.99757 * 2 1 4 4 H 1.07994 * 119.99942 * 203.04595 * 3 2 1 5 5 C 1.38807 * 119.99986 * 23.04710 * 3 2 1 6 6 N 1.31624 * 120.00077 * 12.93430 * 5 3 2 7 7 Si 1.86804 * 120.00157 * 192.92828 * 5 3 2 8 8 H 1.48494 * 109.47103 * 90.00178 * 7 5 3 9 9 H 1.48500 * 109.47236 * 210.00378 * 7 5 3 10 10 H 1.48505 * 109.46648 * 330.00036 * 7 5 3 11 11 C 1.46499 * 120.00111 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47016 * 89.99735 * 11 2 1 13 13 C 1.53001 * 109.47310 * 179.97438 * 12 11 2 14 14 N 1.46503 * 109.47303 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99931 * 270.00163 * 14 13 12 16 16 C 1.34768 * 119.99780 * 90.00172 * 14 13 12 17 17 O 1.21283 * 120.00112 * 359.97438 * 16 14 13 18 18 C 1.50703 * 120.00070 * 180.02562 * 16 14 13 19 19 H 1.09001 * 110.43287 * 298.91257 * 18 16 14 20 20 C 1.54619 * 110.49011 * 176.22689 * 18 16 14 21 21 C 1.54478 * 101.76905 * 266.11877 * 20 18 16 22 22 N 1.46765 * 105.47204 * 334.58571 * 21 20 18 23 23 C 1.34424 * 111.30003 * 17.01434 * 22 21 20 24 24 O 1.21283 * 124.94200 * 179.63145 * 23 22 21 25 25 H 1.09006 * 109.46809 * 275.12050 * 1 2 3 26 26 H 1.08997 * 109.47770 * 35.11821 * 1 2 3 27 27 H 1.09006 * 109.47281 * 155.12537 * 1 2 3 28 28 H 0.97005 * 119.99959 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46927 * 329.99889 * 11 2 1 30 30 H 1.08990 * 109.47006 * 209.99908 * 11 2 1 31 31 H 1.09002 * 109.47524 * 59.99909 * 12 11 2 32 32 H 1.09001 * 109.47180 * 300.00329 * 12 11 2 33 33 H 1.09003 * 109.46724 * 60.00099 * 13 12 11 34 34 H 1.08999 * 109.46834 * 300.00463 * 13 12 11 35 35 H 1.08998 * 109.47598 * 89.99709 * 15 14 13 36 36 H 1.08999 * 109.47176 * 210.00051 * 15 14 13 37 37 H 1.09001 * 109.47114 * 329.99744 * 15 14 13 38 38 H 1.09001 * 110.97029 * 24.23860 * 20 18 16 39 39 H 1.09005 * 110.97275 * 147.99732 * 20 18 16 40 40 H 1.08994 * 110.25116 * 215.58373 * 21 20 18 41 41 H 1.08997 * 110.32059 * 93.61760 * 21 20 18 42 42 H 0.96997 * 124.35566 * 196.99867 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2596 1.1460 7 14 2.3158 4.0074 0.1456 8 1 1.7986 4.5534 -1.1348 9 1 1.9758 4.9364 1.2532 10 1 3.7908 3.8578 0.0602 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 6 3.2181 -3.0344 -1.4439 14 7 3.4627 -3.4564 -2.8254 15 6 2.4865 -4.3022 -3.5167 16 6 4.5858 -3.0665 -3.4601 17 8 5.3937 -2.3659 -2.8880 18 6 4.8372 -3.5001 -4.8814 19 1 4.8947 -4.5868 -4.9432 20 6 6.1340 -2.8551 -5.4226 21 6 5.5885 -1.5911 -6.1234 22 7 4.2015 -1.9099 -6.4818 23 6 3.7521 -2.9745 -5.7951 24 8 2.6389 -3.4456 -5.8942 25 1 -0.3633 0.0917 1.0236 26 1 -0.3634 0.8405 -0.5911 27 1 -0.3634 -0.9324 -0.4323 28 1 -0.0150 3.0662 1.4752 29 1 1.6085 -2.0286 0.5130 30 1 3.1499 -1.1386 0.5133 31 1 3.0415 -0.9499 -1.9569 32 1 1.5000 -1.8398 -1.9571 33 1 2.6294 -3.7945 -0.9303 34 1 4.1705 -2.9038 -0.9301 35 1 1.7597 -3.6730 -4.0303 36 1 3.0008 -4.9309 -4.2436 37 1 1.9728 -4.9322 -2.7905 38 1 6.8072 -2.5894 -4.6075 39 1 6.6290 -3.5138 -6.1363 40 1 6.1699 -1.3761 -7.0199 41 1 5.6162 -0.7396 -5.4435 42 1 3.6764 -1.4158 -7.1306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755041162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:54 Heat of formation + Delta-G solvation = -40.276443 kcal Electronic energy + Delta-G solvation = -23133.409688 eV Core-core repulsion = 19728.570050 eV Total energy + Delta-G solvation = -3404.839638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24017 -38.98693 -36.89532 -36.04169 -35.17582 -32.54718 -31.59600 -30.08157 -28.19499 -26.83482 -25.83587 -25.21954 -22.91298 -21.86290 -21.26860 -20.15644 -18.95583 -17.78600 -17.61278 -16.61660 -16.11413 -16.04216 -15.23833 -14.76660 -14.65409 -14.13318 -14.01054 -13.74009 -13.51094 -13.25148 -13.11466 -12.87872 -12.71968 -12.57028 -12.24611 -11.82611 -11.59647 -11.52447 -11.18069 -10.89605 -10.77179 -10.66265 -10.38433 -10.11514 -10.08144 -9.84215 -9.78347 -9.67291 -9.36046 -8.60367 -8.41131 -6.64210 -5.63926 -3.10298 2.13008 2.57519 3.02339 3.13211 3.43457 3.49196 3.51448 4.00894 4.11340 4.36045 4.57450 4.64575 4.81226 5.11572 5.20796 5.27256 5.40148 5.42687 5.51836 5.56771 5.61992 5.74988 5.83866 5.98600 6.10401 6.13389 6.22573 6.45206 6.53416 6.67530 6.71213 6.82135 6.90239 7.10319 7.38259 7.45403 7.79827 7.89544 7.93268 8.11298 8.49174 9.32990 9.96727 10.45786 11.40944 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.004303 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.396073 B = 6505.521689 C = 7142.281083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.250 4.250 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.115 3.885 14 N -0.605 5.605 15 C 0.079 3.921 16 C 0.526 3.474 17 O -0.527 6.527 18 C -0.150 4.150 19 H 0.130 0.870 20 C -0.120 4.120 21 C 0.098 3.902 22 N -0.726 5.726 23 C 0.529 3.471 24 O -0.519 6.519 25 H 0.030 0.970 26 H 0.038 0.962 27 H -0.004 1.004 28 H 0.251 0.749 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.454 -14.431 -14.948 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.380 4.380 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.556 5.556 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.007 4.007 14 N -0.337 5.337 15 C -0.063 4.063 16 C 0.311 3.689 17 O -0.404 6.404 18 C -0.174 4.174 19 H 0.148 0.852 20 C -0.158 4.158 21 C -0.027 4.027 22 N -0.382 5.382 23 C 0.314 3.686 24 O -0.395 6.395 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 9.231 -14.230 -14.496 22.312 hybrid contribution -0.005 1.194 -0.577 1.326 sum 9.226 -13.036 -15.073 21.960 Atomic orbital electron populations 1.20769 0.82763 0.95219 0.99335 1.43884 1.01805 1.00764 1.86152 1.19213 0.98209 0.85674 1.34879 0.91500 1.25009 0.97972 0.98454 0.98368 1.70077 1.19572 1.27013 1.38900 0.86265 0.78838 0.84254 0.77312 1.21631 1.21744 1.20446 1.20624 0.96052 0.88340 0.92190 1.22595 0.99305 0.95240 1.01976 1.21664 1.01361 0.97228 0.80429 1.47961 1.20162 1.50561 1.15055 1.22125 0.92834 0.94548 0.96815 1.19690 0.81733 0.80642 0.86787 1.90723 1.45516 1.37143 1.67001 1.22130 0.97253 1.04095 0.93965 0.85224 1.22615 0.95800 0.95977 1.01421 1.22164 0.81406 0.98674 1.00426 1.46147 1.16000 1.32103 1.43915 1.20277 0.87480 0.80453 0.80402 1.90764 1.20756 1.61613 1.66331 0.95123 0.94298 0.98533 0.93878 0.94710 0.93424 0.92000 0.92877 0.90740 0.89950 0.90908 0.91010 0.91654 0.87105 0.89344 0.89822 0.90203 0.74708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.25 8.98 59.85 0.54 4.79 16 2 N -0.60 -16.07 2.92 -181.12 -0.53 -16.60 16 3 C -0.25 -7.26 9.65 -15.06 -0.15 -7.40 16 4 H 0.07 1.93 7.86 -52.49 -0.41 1.52 16 5 C 0.00 -0.01 5.10 -17.43 -0.09 -0.10 16 6 N -0.91 -27.58 10.71 55.49 0.59 -26.99 16 7 Si 0.90 22.78 29.57 -169.99 -5.03 17.76 16 8 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 9 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 C 0.16 3.37 5.64 -4.04 -0.02 3.35 16 12 C -0.15 -2.86 5.86 -26.73 -0.16 -3.02 16 13 C 0.12 1.76 5.45 -4.04 -0.02 1.74 16 14 N -0.61 -8.50 2.87 -181.57 -0.52 -9.02 16 15 C 0.08 0.94 8.73 59.85 0.52 1.46 16 16 C 0.53 7.46 7.11 -10.99 -0.08 7.38 16 17 O -0.53 -9.09 15.03 5.55 0.08 -9.01 16 18 C -0.15 -1.54 2.43 -91.79 -0.22 -1.76 16 19 H 0.13 1.03 7.49 -51.93 -0.39 0.64 16 20 C -0.12 -0.94 6.53 -25.10 -0.16 -1.11 16 21 C 0.10 0.76 7.78 -3.12 -0.02 0.74 16 22 N -0.73 -6.89 6.24 -59.20 -0.37 -7.26 16 23 C 0.53 6.23 7.35 -10.86 -0.08 6.15 16 24 O -0.52 -7.41 14.01 5.56 0.08 -7.33 16 25 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 26 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 27 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 28 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 30 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 34 H 0.08 1.32 7.42 -51.93 -0.39 0.93 16 35 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 36 H 0.07 0.74 5.76 -51.93 -0.30 0.44 16 37 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 38 H 0.11 1.00 6.92 -51.93 -0.36 0.65 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.41 3.33 8.96 -40.82 -0.37 2.97 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -35.17 337.87 -7.18 -42.35 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.63 Total: -1.21 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 0.05 Total: 12.23 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.83 Total: -59.88 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.16 Total: -16.34 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.17 -7.18 -42.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755041162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.078 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds