Wall clock time and date at job start Tue Mar 31 2020 03:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36928 * 120.00362 * 2 1 4 4 H 1.07998 * 120.00197 * 195.34431 * 3 2 1 5 5 C 1.38816 * 119.99837 * 15.34831 * 3 2 1 6 6 N 1.31615 * 120.00326 * 19.02433 * 5 3 2 7 7 Si 1.86802 * 119.99704 * 199.02147 * 5 3 2 8 8 H 1.48502 * 109.47383 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47122 * 120.00183 * 7 5 3 10 10 H 1.48507 * 109.47157 * 239.99627 * 7 5 3 11 11 C 1.46500 * 119.99551 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47257 * 270.00088 * 11 2 1 13 13 C 1.52996 * 109.47054 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.46789 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99749 * 269.72267 * 14 13 12 16 16 C 1.34771 * 120.00008 * 90.00179 * 14 13 12 17 17 O 1.21280 * 120.00125 * 359.72260 * 16 14 13 18 18 C 1.50702 * 119.99989 * 179.72171 * 16 14 13 19 19 H 1.08998 * 115.55209 * 295.22126 * 18 16 14 20 20 C 1.52997 * 117.49722 * 80.89563 * 18 16 14 21 21 C 1.52993 * 60.00146 * 107.48701 * 20 18 16 22 22 H 1.09004 * 117.50145 * 107.49031 * 21 20 18 23 23 C 1.50706 * 117.49887 * 252.50805 * 21 20 18 24 24 N 1.34773 * 119.99761 * 155.48518 * 23 21 20 25 25 O 1.21274 * 119.99782 * 335.48519 * 23 21 20 26 26 H 1.08999 * 109.46971 * 274.01839 * 1 2 3 27 27 H 1.09003 * 109.46635 * 34.01021 * 1 2 3 28 28 H 1.08996 * 109.47396 * 154.01884 * 1 2 3 29 29 H 0.97000 * 120.00167 * 180.02562 * 6 5 3 30 30 H 1.08996 * 109.46980 * 150.00051 * 11 2 1 31 31 H 1.08998 * 109.47155 * 29.99719 * 11 2 1 32 32 H 1.08997 * 109.47034 * 59.99529 * 12 11 2 33 33 H 1.08998 * 109.46737 * 299.99887 * 12 11 2 34 34 H 1.09006 * 109.47052 * 60.00016 * 13 12 11 35 35 H 1.08995 * 109.47499 * 300.00046 * 13 12 11 36 36 H 1.09000 * 109.47350 * 270.27314 * 15 14 13 37 37 H 1.08996 * 109.47055 * 30.28092 * 15 14 13 38 38 H 1.09010 * 109.46609 * 150.28095 * 15 14 13 39 39 H 1.09006 * 117.49594 * 214.97976 * 20 18 16 40 40 H 1.08998 * 117.50049 * 359.96915 * 20 18 16 41 41 H 0.96993 * 120.00402 * 0.02562 * 24 23 21 42 42 H 0.97003 * 119.99474 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.2009 1.2024 -0.2475 5 6 1.4929 2.3665 0.3182 6 7 0.3500 2.3288 0.9700 7 14 2.2310 4.0091 -0.1786 8 1 3.5107 3.7799 -0.8963 9 1 1.2855 4.7271 -1.0705 10 1 2.4832 4.8260 1.0357 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7112 1.4418 13 6 3.2168 -3.0365 1.4411 14 7 3.4614 -3.4598 2.8222 15 6 4.6857 -3.0425 3.5102 16 6 2.5629 -4.2375 3.4578 17 8 1.5494 -4.5829 2.8883 18 6 2.8175 -4.6781 4.8763 19 1 3.6768 -5.3335 5.0180 20 6 2.4959 -3.6834 5.9934 21 6 1.6001 -4.9042 5.7751 22 1 1.6583 -5.7088 6.5082 23 6 0.2382 -4.6695 5.1741 24 7 -0.3862 -5.6631 4.5114 25 8 -0.2958 -3.5865 5.2868 26 1 -0.3633 0.0720 1.0251 27 1 -0.3633 0.8519 -0.5748 28 1 -0.3634 -0.9238 -0.4502 29 1 -0.1091 3.1539 1.1920 30 1 3.1499 -1.1383 -0.5143 31 1 1.6083 -2.0282 -0.5147 32 1 1.5000 -1.8416 1.9555 33 1 3.0416 -0.9518 1.9559 34 1 4.1692 -2.9065 0.9272 35 1 2.6273 -3.7957 0.9271 36 1 5.4703 -3.7784 3.3339 37 1 5.0046 -2.0727 3.1283 38 1 4.4930 -2.9662 4.5804 39 1 3.1436 -3.6846 6.8703 40 1 2.1007 -2.7101 5.7024 41 1 0.0407 -6.5294 4.4215 42 1 -1.2630 -5.5120 4.1248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755042830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:49 Heat of formation + Delta-G solvation = -20.841524 kcal Electronic energy + Delta-G solvation = -22979.891655 eV Core-core repulsion = 19575.894778 eV Total energy + Delta-G solvation = -3403.996877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57539 -38.88847 -36.41534 -35.85645 -35.23336 -33.39797 -32.20572 -30.16195 -26.91433 -26.31447 -25.71417 -24.58998 -23.56276 -21.85356 -20.33051 -20.07821 -18.91589 -17.70422 -16.98754 -16.65761 -16.33670 -15.89184 -15.53913 -14.83610 -14.65345 -14.15989 -13.90698 -13.84067 -13.41032 -13.01384 -12.90644 -12.80286 -12.58155 -12.24016 -12.17054 -11.51514 -11.35889 -10.91845 -10.85584 -10.83215 -10.76287 -10.61847 -10.35965 -9.98353 -9.92979 -9.78720 -9.68221 -9.63569 -9.41746 -8.56105 -8.39485 -6.72481 -5.64215 -3.01548 2.57388 2.60507 3.00709 3.41746 3.43419 3.50158 3.52575 3.72272 4.35146 4.46400 4.54404 4.58515 4.87630 5.06934 5.12981 5.31505 5.35344 5.47294 5.48472 5.50332 5.57974 5.68799 5.85785 5.89250 6.09848 6.18316 6.30064 6.54949 6.72061 6.89200 6.92869 6.93079 7.21705 7.45495 7.47969 7.51631 7.81102 7.91461 8.23123 8.43434 8.46096 9.32157 9.98480 10.45954 11.42198 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019754 B = 0.004103 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.077472 B = 6822.188699 C = 7185.811753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.251 4.251 4 H 0.071 0.929 5 C -0.003 4.003 6 N -0.905 5.905 7 Si 0.900 3.100 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.157 3.843 12 C -0.150 4.150 13 C 0.117 3.883 14 N -0.606 5.606 15 C 0.077 3.923 16 C 0.535 3.465 17 O -0.525 6.525 18 C -0.166 4.166 19 H 0.136 0.864 20 C -0.128 4.128 21 C -0.163 4.163 22 H 0.135 0.865 23 C 0.556 3.444 24 N -0.836 5.836 25 O -0.541 6.541 26 H 0.023 0.977 27 H 0.048 0.952 28 H -0.003 1.003 29 H 0.251 0.749 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.398 0.602 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 -19.074 9.245 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.380 4.380 4 H 0.088 0.912 5 C -0.201 4.201 6 N -0.551 5.551 7 Si 0.730 3.270 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.029 3.971 12 C -0.192 4.192 13 C -0.006 4.006 14 N -0.339 5.339 15 C -0.066 4.066 16 C 0.321 3.679 17 O -0.402 6.402 18 C -0.187 4.187 19 H 0.154 0.846 20 C -0.166 4.166 21 C -0.185 4.185 22 H 0.153 0.847 23 C 0.340 3.660 24 N -0.397 5.397 25 O -0.417 6.417 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.225 0.775 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.291 -18.336 9.115 21.735 hybrid contribution 0.377 0.551 -0.206 0.699 sum 7.668 -17.785 8.908 21.318 Atomic orbital electron populations 1.20791 0.82419 0.95705 0.99158 1.44053 1.02049 1.00749 1.85719 1.19262 0.94555 0.84268 1.39958 0.91154 1.24866 0.97792 0.97986 0.99453 1.70165 1.18023 1.25967 1.40958 0.86255 0.78329 0.84489 0.77932 1.20416 1.21670 1.21937 1.20707 0.95581 0.88159 0.92677 1.22627 1.00131 0.94436 1.02000 1.21654 1.00452 0.97911 0.80534 1.47831 1.20993 1.50023 1.15053 1.21812 0.86098 1.00761 0.97944 1.19578 0.83150 0.78410 0.86748 1.90728 1.26194 1.56080 1.67160 1.22312 1.00051 1.05399 0.90952 0.84646 1.23089 1.00141 0.95123 0.98231 1.22268 0.90053 1.03533 1.02600 0.84728 1.19262 0.85566 0.83894 0.77257 1.43478 1.22884 1.15234 1.58078 1.90781 1.66820 1.24424 1.59704 0.95828 0.93323 0.98455 0.93881 0.93948 0.94478 0.92349 0.92058 0.90939 0.90390 0.92815 0.90555 0.90942 0.86770 0.86897 0.77491 0.76864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.43 9.04 59.85 0.54 4.97 16 2 N -0.60 -16.19 2.93 -181.12 -0.53 -16.72 16 3 C -0.25 -7.18 9.70 -15.06 -0.15 -7.33 16 4 H 0.07 1.94 7.88 -52.49 -0.41 1.53 16 5 C 0.00 -0.09 4.99 -17.43 -0.09 -0.18 16 6 N -0.91 -27.87 10.64 55.49 0.59 -27.28 16 7 Si 0.90 22.51 29.59 -169.99 -5.03 17.48 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 11 C 0.16 3.40 5.71 -4.04 -0.02 3.37 16 12 C -0.15 -3.02 5.86 -26.73 -0.16 -3.18 16 13 C 0.12 1.80 5.41 -4.04 -0.02 1.77 16 14 N -0.61 -8.27 2.87 -181.57 -0.52 -8.79 16 15 C 0.08 0.75 10.26 59.85 0.61 1.36 16 16 C 0.53 7.70 7.11 -10.99 -0.08 7.62 16 17 O -0.53 -9.32 13.90 5.56 0.08 -9.25 16 18 C -0.17 -1.64 4.66 -91.77 -0.43 -2.07 16 19 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.13 -1.29 8.80 -26.74 -0.24 -1.52 16 21 C -0.16 -1.67 6.18 -91.77 -0.57 -2.23 16 22 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 23 C 0.56 8.08 5.71 -10.98 -0.06 8.02 16 24 N -0.84 -9.41 8.09 31.22 0.25 -9.15 16 25 O -0.54 -10.78 17.38 5.56 0.10 -10.69 16 26 H 0.02 0.69 7.59 -51.93 -0.39 0.30 16 27 H 0.05 1.39 6.90 -51.93 -0.36 1.03 16 28 H 0.00 -0.07 7.85 -51.93 -0.41 -0.48 16 29 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.04 0.86 8.02 -51.93 -0.42 0.44 16 31 H 0.04 0.75 7.86 -51.93 -0.41 0.35 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.94 8.07 -51.93 -0.42 0.53 16 35 H 0.08 1.26 7.43 -51.93 -0.39 0.87 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.07 0.60 6.10 -51.92 -0.32 0.29 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.11 1.54 7.88 -51.93 -0.41 1.14 16 41 H 0.40 3.20 8.83 -40.82 -0.36 2.84 16 42 H 0.40 4.47 8.93 -40.82 -0.36 4.10 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -38.04 348.73 -7.21 -45.25 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.74 Total: 3.28 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.65 Total: 10.62 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.21 Total: -61.95 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.17 Total: -19.93 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.04 -7.21 -45.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755042830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.406 kcal (2) G-P(sol) polarization free energy of solvation -38.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds