Wall clock time and date at job start Tue Mar 31 2020 03:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36928 * 120.00362 * 2 1 4 4 H 1.07998 * 120.00197 * 195.34431 * 3 2 1 5 5 C 1.38816 * 119.99837 * 15.34831 * 3 2 1 6 6 N 1.31615 * 120.00326 * 19.02433 * 5 3 2 7 7 Si 1.86802 * 119.99704 * 199.02147 * 5 3 2 8 8 H 1.48502 * 109.47383 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47122 * 120.00183 * 7 5 3 10 10 H 1.48507 * 109.47157 * 239.99627 * 7 5 3 11 11 C 1.46500 * 119.99551 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47257 * 270.00088 * 11 2 1 13 13 C 1.52996 * 109.47054 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.46789 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99749 * 269.72267 * 14 13 12 16 16 C 1.34771 * 120.00008 * 90.00179 * 14 13 12 17 17 O 1.21280 * 120.00125 * 359.72260 * 16 14 13 18 18 C 1.50702 * 119.99989 * 179.72171 * 16 14 13 19 19 H 1.08998 * 115.55209 * 295.22126 * 18 16 14 20 20 C 1.52997 * 117.49722 * 80.89563 * 18 16 14 21 21 C 1.52993 * 60.00146 * 107.48701 * 20 18 16 22 22 H 1.09004 * 117.50145 * 107.49031 * 21 20 18 23 23 C 1.50706 * 117.49887 * 252.50805 * 21 20 18 24 24 N 1.34773 * 119.99761 * 155.48518 * 23 21 20 25 25 O 1.21274 * 119.99782 * 335.48519 * 23 21 20 26 26 H 1.08999 * 109.46971 * 274.01839 * 1 2 3 27 27 H 1.09003 * 109.46635 * 34.01021 * 1 2 3 28 28 H 1.08996 * 109.47396 * 154.01884 * 1 2 3 29 29 H 0.97000 * 120.00167 * 180.02562 * 6 5 3 30 30 H 1.08996 * 109.46980 * 150.00051 * 11 2 1 31 31 H 1.08998 * 109.47155 * 29.99719 * 11 2 1 32 32 H 1.08997 * 109.47034 * 59.99529 * 12 11 2 33 33 H 1.08998 * 109.46737 * 299.99887 * 12 11 2 34 34 H 1.09006 * 109.47052 * 60.00016 * 13 12 11 35 35 H 1.08995 * 109.47499 * 300.00046 * 13 12 11 36 36 H 1.09000 * 109.47350 * 270.27314 * 15 14 13 37 37 H 1.08996 * 109.47055 * 30.28092 * 15 14 13 38 38 H 1.09010 * 109.46609 * 150.28095 * 15 14 13 39 39 H 1.09006 * 117.49594 * 214.97976 * 20 18 16 40 40 H 1.08998 * 117.50049 * 359.96915 * 20 18 16 41 41 H 0.96993 * 120.00402 * 0.02562 * 24 23 21 42 42 H 0.97003 * 119.99474 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.2009 1.2024 -0.2475 5 6 1.4929 2.3665 0.3182 6 7 0.3500 2.3288 0.9700 7 14 2.2310 4.0091 -0.1786 8 1 3.5107 3.7799 -0.8963 9 1 1.2855 4.7271 -1.0705 10 1 2.4832 4.8260 1.0357 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7112 1.4418 13 6 3.2168 -3.0365 1.4411 14 7 3.4614 -3.4598 2.8222 15 6 4.6857 -3.0425 3.5102 16 6 2.5629 -4.2375 3.4578 17 8 1.5494 -4.5829 2.8883 18 6 2.8175 -4.6781 4.8763 19 1 3.6768 -5.3335 5.0180 20 6 2.4959 -3.6834 5.9934 21 6 1.6001 -4.9042 5.7751 22 1 1.6583 -5.7088 6.5082 23 6 0.2382 -4.6695 5.1741 24 7 -0.3862 -5.6631 4.5114 25 8 -0.2958 -3.5865 5.2868 26 1 -0.3633 0.0720 1.0251 27 1 -0.3633 0.8519 -0.5748 28 1 -0.3634 -0.9238 -0.4502 29 1 -0.1091 3.1539 1.1920 30 1 3.1499 -1.1383 -0.5143 31 1 1.6083 -2.0282 -0.5147 32 1 1.5000 -1.8416 1.9555 33 1 3.0416 -0.9518 1.9559 34 1 4.1692 -2.9065 0.9272 35 1 2.6273 -3.7957 0.9271 36 1 5.4703 -3.7784 3.3339 37 1 5.0046 -2.0727 3.1283 38 1 4.4930 -2.9662 4.5804 39 1 3.1436 -3.6846 6.8703 40 1 2.1007 -2.7101 5.7024 41 1 0.0407 -6.5294 4.4215 42 1 -1.2630 -5.5120 4.1248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755042830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:48 Heat of formation + Delta-G solvation = -50.450185 kcal Electronic energy + Delta-G solvation = -22981.175583 eV Core-core repulsion = 19575.894778 eV Total energy + Delta-G solvation = -3405.280805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59728 -40.04728 -38.02634 -37.00226 -36.64130 -34.49972 -34.04335 -32.03084 -28.23722 -27.84711 -27.43387 -25.71893 -24.80699 -23.34279 -22.02790 -21.26320 -19.95102 -18.80212 -18.67744 -17.97100 -17.50613 -16.97726 -16.83280 -16.45251 -15.92603 -15.77691 -15.39477 -15.09128 -14.92184 -14.68664 -14.44198 -13.98783 -13.80160 -13.28707 -13.23914 -13.10107 -13.07092 -12.77065 -12.58180 -12.51066 -12.32459 -12.03421 -11.86815 -11.67658 -11.61998 -11.46534 -11.09931 -10.79202 -10.64022 -10.49982 -9.67004 -8.89999 -7.86273 -5.27310 1.44532 1.46250 1.52854 1.57658 1.57798 2.01083 2.50549 2.56775 2.82100 3.27765 3.49349 3.64509 3.68218 3.71855 4.01163 4.13515 4.31752 4.33830 4.36658 4.51389 4.56993 4.71317 4.73356 4.78050 4.79750 4.82344 4.88001 4.97716 5.04679 5.20837 5.22901 5.39121 5.57108 5.59271 5.64234 5.92573 6.26813 6.41771 6.55091 7.09558 7.16106 7.42893 7.83779 8.28196 9.20358 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019754 B = 0.004103 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.077472 B = 6822.188699 C = 7185.811753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.622 5.622 3 C -0.259 4.259 4 H 0.083 0.917 5 C -0.064 4.064 6 N -0.947 5.947 7 Si 0.973 3.027 8 H -0.259 1.259 9 H -0.292 1.292 10 H -0.294 1.294 11 C 0.152 3.848 12 C -0.129 4.129 13 C 0.128 3.872 14 N -0.612 5.612 15 C 0.071 3.929 16 C 0.517 3.483 17 O -0.571 6.571 18 C -0.148 4.148 19 H 0.188 0.812 20 C -0.129 4.129 21 C -0.164 4.164 22 H 0.185 0.815 23 C 0.541 3.459 24 N -0.821 5.821 25 O -0.612 6.612 26 H -0.014 1.014 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.246 0.754 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.008 0.992 33 H 0.041 0.959 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.160 0.840 40 H 0.065 0.935 41 H 0.415 0.585 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.632 -20.995 9.680 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.345 5.345 3 C -0.389 4.389 4 H 0.100 0.900 5 C -0.258 4.258 6 N -0.594 5.594 7 Si 0.800 3.200 8 H -0.183 1.183 9 H -0.219 1.219 10 H -0.222 1.222 11 C 0.026 3.974 12 C -0.171 4.171 13 C 0.004 3.996 14 N -0.343 5.343 15 C -0.071 4.071 16 C 0.305 3.695 17 O -0.450 6.450 18 C -0.169 4.169 19 H 0.205 0.795 20 C -0.166 4.166 21 C -0.185 4.185 22 H 0.202 0.798 23 C 0.327 3.673 24 N -0.381 5.381 25 O -0.494 6.494 26 H 0.004 0.996 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.060 0.940 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.178 0.822 40 H 0.083 0.917 41 H 0.246 0.754 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 10.861 -20.339 9.543 24.954 hybrid contribution -0.740 1.072 -0.372 1.354 sum 10.122 -19.268 9.170 23.617 Atomic orbital electron populations 1.20482 0.83314 0.96013 0.96715 1.44355 1.02004 1.02293 1.85825 1.19701 0.95146 0.85099 1.38924 0.89950 1.25773 0.98490 1.01794 0.99721 1.70361 1.19903 1.26505 1.42672 0.85120 0.78107 0.79484 0.77242 1.18296 1.21938 1.22159 1.20935 0.96283 0.86440 0.93755 1.22302 0.97961 0.96851 0.99949 1.21400 1.01112 0.94599 0.82462 1.47961 1.22251 1.49568 1.14518 1.22094 0.85156 1.01429 0.98409 1.20517 0.82435 0.77989 0.88542 1.90701 1.27885 1.57814 1.68601 1.22410 1.01223 1.05672 0.87567 0.79538 1.23151 1.00732 0.92911 0.99855 1.22461 0.87344 1.05167 1.03494 0.79831 1.20176 0.87163 0.83141 0.76857 1.43444 1.22651 1.15565 1.56482 1.90746 1.68919 1.27217 1.62554 0.99581 0.95481 0.95700 0.94457 0.91584 0.93134 0.97318 0.94019 0.87534 0.91152 0.89241 0.91303 0.89454 0.82183 0.91668 0.75437 0.77176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.15 9.04 127.77 1.15 11.30 16 2 N -0.62 -33.95 2.93 -726.93 -2.13 -36.08 16 3 C -0.26 -14.89 9.70 84.04 0.82 -14.07 16 4 H 0.08 4.45 7.88 -2.91 -0.02 4.43 16 5 C -0.06 -3.78 4.99 84.86 0.42 -3.36 16 6 N -0.95 -60.52 10.64 21.65 0.23 -60.29 16 7 Si 0.97 46.80 29.59 68.60 2.03 48.83 16 8 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 9 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 11 C 0.15 6.55 5.71 86.38 0.49 7.04 16 12 C -0.13 -5.31 5.86 30.59 0.18 -5.13 16 13 C 0.13 3.78 5.41 86.38 0.47 4.25 16 14 N -0.61 -15.70 2.87 -846.74 -2.43 -18.13 16 15 C 0.07 1.15 10.26 127.77 1.31 2.46 16 16 C 0.52 14.31 7.11 87.66 0.62 14.93 16 17 O -0.57 -20.50 13.90 -3.03 -0.04 -20.54 16 18 C -0.15 -2.44 4.66 -11.54 -0.05 -2.49 16 19 H 0.19 1.21 8.14 -2.39 -0.02 1.19 16 20 C -0.13 -2.31 8.80 30.59 0.27 -2.04 16 21 C -0.16 -2.95 6.18 -11.54 -0.07 -3.02 16 22 H 0.18 1.47 8.14 -2.38 -0.02 1.45 16 23 C 0.54 15.97 5.71 87.66 0.50 16.47 16 24 N -0.82 -18.61 8.09 -173.54 -1.40 -20.02 16 25 O -0.61 -26.11 17.38 -3.01 -0.05 -26.17 16 26 H -0.01 -0.89 7.59 -2.39 -0.02 -0.91 16 27 H 0.03 1.59 6.90 -2.39 -0.02 1.58 16 28 H 0.02 1.22 7.85 -2.39 -0.02 1.20 16 29 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.07 2.54 8.02 -2.39 -0.02 2.52 16 31 H 0.05 2.03 7.86 -2.39 -0.02 2.01 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 2.45 8.07 -2.38 -0.02 2.43 16 35 H 0.07 2.22 7.43 -2.39 -0.02 2.20 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 1.24 8.07 -2.39 -0.02 1.22 16 38 H 0.09 1.17 6.10 -2.38 -0.01 1.15 16 39 H 0.16 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.06 1.85 7.88 -2.39 -0.02 1.83 16 41 H 0.41 6.22 8.83 -92.71 -0.82 5.40 16 42 H 0.40 9.33 8.93 -92.71 -0.83 8.51 16 Total: -1.00 -90.33 348.73 1.69 -88.64 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -0.62 Total: 17.42 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 6.11 Total: 26.34 kcal Atomic # 7 Polarization: -128.79 SS G_CDS: -5.74 Total: -134.52 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.09 Total: -46.71 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -90.33 1.69 -88.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755042830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.189 kcal (2) G-P(sol) polarization free energy of solvation -90.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds