Wall clock time and date at job start Tue Mar 31 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46891 * 2 1 4 4 C 1.34780 * 119.99989 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99653 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00264 * 179.97438 * 4 3 2 7 7 C 1.50692 * 109.47106 * 179.97438 * 6 4 3 8 8 O 1.21277 * 120.00377 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00274 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00385 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46930 * 35.00598 * 10 9 7 12 12 C 1.52997 * 109.47137 * 274.99807 * 10 9 7 13 13 C 1.53008 * 109.47037 * 154.99641 * 10 9 7 14 14 C 1.53497 * 114.20384 * 179.97438 * 13 10 9 15 15 N 1.47070 * 87.98301 * 87.52522 * 14 13 10 16 16 C 1.36932 * 136.05620 * 207.08686 * 15 14 13 17 17 H 1.08006 * 120.00205 * 7.81892 * 16 15 14 18 18 C 1.38809 * 120.00281 * 187.82655 * 16 15 14 19 19 N 1.31616 * 120.00068 * 195.17204 * 18 16 15 20 20 Si 1.86802 * 119.99918 * 15.16359 * 18 16 15 21 21 H 1.48504 * 109.47042 * 270.00682 * 20 18 16 22 22 H 1.48499 * 109.47021 * 30.00157 * 20 18 16 23 23 H 1.48492 * 109.47106 * 150.00508 * 20 18 16 24 24 C 1.47068 * 87.88415 * 27.33811 * 15 14 13 25 25 H 1.09003 * 109.47639 * 300.00361 * 1 2 3 26 26 H 1.09002 * 109.46938 * 60.00660 * 1 2 3 27 27 H 1.09002 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47493 * 239.99801 * 2 1 3 29 29 H 1.09002 * 109.46938 * 119.99340 * 2 1 3 30 30 H 0.96998 * 120.00686 * 359.97438 * 3 2 1 31 31 H 1.08994 * 109.47025 * 59.99477 * 6 4 3 32 32 H 1.09002 * 109.46705 * 299.99445 * 6 4 3 33 33 H 0.97001 * 119.99491 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.46758 * 60.00334 * 12 10 9 35 35 H 1.08999 * 109.46751 * 180.02562 * 12 10 9 36 36 H 1.08995 * 109.47159 * 299.99950 * 12 10 9 37 37 H 1.09008 * 113.41028 * 46.80551 * 13 10 9 38 38 H 1.08996 * 113.46841 * 332.74047 * 14 13 10 39 39 H 1.08998 * 113.51535 * 202.31022 * 14 13 10 40 40 H 0.96995 * 120.00585 * 354.89801 * 19 18 16 41 41 H 1.09005 * 113.46482 * 87.44223 * 24 15 14 42 42 H 1.09000 * 113.46807 * 217.87726 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 5.3526 3.0484 -0.0010 8 8 5.9591 1.9981 -0.0009 9 7 6.0266 4.2155 -0.0020 10 6 7.4916 4.2155 -0.0013 11 1 7.8551 3.3732 -0.5897 12 6 8.0009 4.0915 1.4361 13 6 8.0019 5.5223 -0.6122 14 6 9.5316 5.6373 -0.6646 15 7 9.4865 4.9538 -1.9660 16 6 10.3346 4.1629 -2.6942 17 1 11.2571 3.8127 -2.2551 18 6 10.0088 3.8112 -3.9969 19 7 10.6499 2.8285 -4.5932 20 14 8.6604 4.7326 -4.9037 21 1 7.3558 4.0658 -4.6610 22 1 8.5999 6.1323 -4.4112 23 1 8.9533 4.7322 -6.3594 24 6 8.1322 5.4988 -2.1440 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.3880 2.1185 -0.0004 31 1 3.4826 3.5624 0.8888 32 1 3.4821 3.5619 -0.8912 33 1 5.5415 5.0556 -0.0031 34 1 7.6374 3.1606 1.8712 35 1 9.0909 4.0919 1.4366 36 1 7.6373 4.9339 2.0244 37 1 7.5005 6.4078 -0.2216 38 1 10.0370 5.0616 0.1108 39 1 9.8886 6.6653 -0.7264 40 1 11.3987 2.3990 -4.1509 41 1 8.1194 6.4906 -2.5960 42 1 7.4454 4.8051 -2.6290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755373444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:30 Heat of formation + Delta-G solvation = -13.571343 kcal Electronic energy + Delta-G solvation = -22670.585159 eV Core-core repulsion = 19266.903540 eV Total energy + Delta-G solvation = -3403.681618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29780 -39.28022 -38.14711 -35.39615 -34.56307 -32.39221 -31.84569 -30.58494 -29.06864 -27.74796 -25.29436 -23.89604 -23.21146 -21.67662 -20.85194 -20.08247 -18.92108 -17.39510 -17.35824 -16.71217 -16.15467 -15.88998 -15.75424 -15.04896 -14.98859 -14.32061 -13.84661 -13.71629 -13.52703 -13.25858 -13.17281 -13.05391 -12.72432 -12.46711 -12.14012 -11.98690 -11.84377 -11.65163 -11.40446 -11.14023 -10.88030 -10.60650 -10.24899 -10.07586 -9.97208 -9.42630 -9.23314 -9.21202 -9.09748 -8.76355 -8.59889 -7.09953 -6.21968 -3.13493 2.60351 2.80356 2.94642 3.45595 3.51667 3.52836 3.66558 4.45864 4.66669 4.67891 4.77427 4.83636 4.85795 5.00470 5.01434 5.05649 5.16727 5.21314 5.50438 5.51146 5.61283 5.67936 5.72958 5.79133 5.90165 6.01699 6.14461 6.25413 6.26832 6.34500 6.41117 6.53955 6.58940 6.77230 7.00643 7.21402 7.32122 7.75563 8.19744 8.32667 8.56223 9.06096 9.59954 10.45745 11.28255 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.004129 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.929781 B = 6779.876110 C = 7533.359323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.740 5.740 4 C 0.509 3.491 5 O -0.487 6.487 6 C -0.165 4.165 7 C 0.508 3.492 8 O -0.490 6.490 9 N -0.726 5.726 10 C 0.168 3.832 11 H 0.103 0.897 12 C -0.156 4.156 13 C -0.139 4.139 14 C 0.125 3.875 15 N -0.623 5.623 16 C -0.304 4.304 17 H 0.081 0.919 18 C -0.024 4.024 19 N -0.932 5.932 20 Si 1.063 2.937 21 H -0.295 1.295 22 H -0.283 1.283 23 H -0.296 1.296 24 C 0.105 3.895 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.397 0.603 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.393 0.607 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.037 0.963 40 H 0.261 0.739 41 H 0.045 0.955 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.131 5.080 12.918 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.396 5.396 4 C 0.292 3.708 5 O -0.358 6.358 6 C -0.208 4.208 7 C 0.291 3.709 8 O -0.362 6.362 9 N -0.379 5.379 10 C 0.064 3.936 11 H 0.121 0.879 12 C -0.214 4.214 13 C -0.159 4.159 14 C -0.001 4.001 15 N -0.351 5.351 16 C -0.430 4.430 17 H 0.099 0.901 18 C -0.223 4.223 19 N -0.575 5.575 20 Si 0.895 3.105 21 H -0.222 1.222 22 H -0.209 1.209 23 H -0.224 1.224 24 C -0.021 4.021 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.231 0.769 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.227 0.773 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.724 3.436 11.357 24.753 hybrid contribution 0.290 1.030 1.299 1.683 sum -21.434 4.466 12.656 25.289 Atomic orbital electron populations 1.21998 0.94541 1.03193 1.02383 1.21258 0.93980 0.83118 1.02542 1.46043 1.06936 1.08759 1.77821 1.20080 0.82226 0.91016 0.77436 1.90901 1.54317 1.45432 1.45161 1.21594 0.95940 0.96927 1.06338 1.19865 0.88667 0.84450 0.77963 1.90893 1.69130 1.30431 1.45731 1.46054 1.07660 1.07835 1.76376 1.20605 0.77803 0.98821 0.96371 0.87947 1.22101 1.01865 1.01304 0.96164 1.23181 0.98645 0.96204 0.97893 1.22399 0.91753 0.95772 0.90212 1.46237 1.14013 1.55179 1.19656 1.20114 1.03453 1.23585 0.95867 0.90108 1.25738 1.04176 0.98693 0.93701 1.70880 1.22747 1.21493 1.42331 0.83772 0.75215 0.75774 0.75786 1.22235 1.20910 1.22372 1.22719 0.88931 0.97174 0.93229 0.92065 0.91984 0.90855 0.91490 0.91598 0.76907 0.86372 0.86204 0.77332 0.92551 0.91299 0.93077 0.90601 0.93255 0.94535 0.92848 0.93792 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 10.03 37.16 0.37 -0.45 16 2 C 0.11 0.98 6.39 -4.04 -0.03 0.95 16 3 N -0.74 -6.36 5.56 -60.30 -0.33 -6.69 16 4 C 0.51 6.59 7.82 -10.98 -0.09 6.50 16 5 O -0.49 -9.36 14.18 -18.96 -0.27 -9.63 16 6 C -0.16 -1.61 6.19 -29.04 -0.18 -1.79 16 7 C 0.51 7.87 7.79 -10.99 -0.09 7.79 16 8 O -0.49 -10.68 13.84 -18.96 -0.26 -10.94 16 9 N -0.73 -9.82 5.08 -53.81 -0.27 -10.09 16 10 C 0.17 2.84 2.43 -67.93 -0.16 2.67 16 11 H 0.10 2.32 7.36 -51.93 -0.38 1.94 16 12 C -0.16 -2.32 9.29 37.16 0.35 -1.98 16 13 C -0.14 -2.29 3.73 -89.97 -0.34 -2.63 16 14 C 0.13 2.43 8.08 -8.50 -0.07 2.36 16 15 N -0.62 -15.56 3.42 -184.59 -0.63 -16.19 16 16 C -0.30 -9.05 11.03 -15.06 -0.17 -9.21 16 17 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 18 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 19 N -0.93 -30.67 13.70 55.49 0.76 -29.91 16 20 Si 1.06 27.63 25.50 -169.99 -4.34 23.29 16 21 H -0.29 -7.48 6.97 56.52 0.39 -7.09 16 22 H -0.28 -6.70 5.66 56.52 0.32 -6.38 16 23 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 24 C 0.11 2.21 5.15 -8.37 -0.04 2.17 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.40 1.92 8.47 -40.82 -0.35 1.57 16 31 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.39 3.66 8.60 -40.82 -0.35 3.31 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.05 6.49 -51.93 -0.34 0.72 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.05 0.94 6.43 -51.93 -0.33 0.60 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 8.50 8.73 -40.82 -0.36 8.14 16 41 H 0.04 0.89 7.02 -51.93 -0.36 0.53 16 42 H 0.05 1.14 6.21 -51.93 -0.32 0.82 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -40.90 341.38 -7.49 -48.39 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.75 Total: 1.08 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.53 Total: 5.55 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.48 Total: -62.88 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.53 Total: -20.57 kcal Atomic # 14 Polarization: 27.63 SS G_CDS: -4.34 Total: 23.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -40.90 -7.49 -48.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755373444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.815 kcal (2) G-P(sol) polarization free energy of solvation -40.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds