Wall clock time and date at job start Tue Mar 31 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46891 * 2 1 4 4 C 1.34780 * 119.99989 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99653 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00264 * 179.97438 * 4 3 2 7 7 C 1.50692 * 109.47106 * 179.97438 * 6 4 3 8 8 O 1.21277 * 120.00377 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00274 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00385 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46930 * 35.00598 * 10 9 7 12 12 C 1.52997 * 109.47137 * 274.99807 * 10 9 7 13 13 C 1.53008 * 109.47037 * 154.99641 * 10 9 7 14 14 C 1.53497 * 114.20384 * 179.97438 * 13 10 9 15 15 N 1.47070 * 87.98301 * 87.52522 * 14 13 10 16 16 C 1.36932 * 136.05620 * 207.08686 * 15 14 13 17 17 H 1.08006 * 120.00205 * 7.81892 * 16 15 14 18 18 C 1.38809 * 120.00281 * 187.82655 * 16 15 14 19 19 N 1.31616 * 120.00068 * 195.17204 * 18 16 15 20 20 Si 1.86802 * 119.99918 * 15.16359 * 18 16 15 21 21 H 1.48504 * 109.47042 * 270.00682 * 20 18 16 22 22 H 1.48499 * 109.47021 * 30.00157 * 20 18 16 23 23 H 1.48492 * 109.47106 * 150.00508 * 20 18 16 24 24 C 1.47068 * 87.88415 * 27.33811 * 15 14 13 25 25 H 1.09003 * 109.47639 * 300.00361 * 1 2 3 26 26 H 1.09002 * 109.46938 * 60.00660 * 1 2 3 27 27 H 1.09002 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47493 * 239.99801 * 2 1 3 29 29 H 1.09002 * 109.46938 * 119.99340 * 2 1 3 30 30 H 0.96998 * 120.00686 * 359.97438 * 3 2 1 31 31 H 1.08994 * 109.47025 * 59.99477 * 6 4 3 32 32 H 1.09002 * 109.46705 * 299.99445 * 6 4 3 33 33 H 0.97001 * 119.99491 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.46758 * 60.00334 * 12 10 9 35 35 H 1.08999 * 109.46751 * 180.02562 * 12 10 9 36 36 H 1.08995 * 109.47159 * 299.99950 * 12 10 9 37 37 H 1.09008 * 113.41028 * 46.80551 * 13 10 9 38 38 H 1.08996 * 113.46841 * 332.74047 * 14 13 10 39 39 H 1.08998 * 113.51535 * 202.31022 * 14 13 10 40 40 H 0.96995 * 120.00585 * 354.89801 * 19 18 16 41 41 H 1.09005 * 113.46482 * 87.44223 * 24 15 14 42 42 H 1.09000 * 113.46807 * 217.87726 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 5.3526 3.0484 -0.0010 8 8 5.9591 1.9981 -0.0009 9 7 6.0266 4.2155 -0.0020 10 6 7.4916 4.2155 -0.0013 11 1 7.8551 3.3732 -0.5897 12 6 8.0009 4.0915 1.4361 13 6 8.0019 5.5223 -0.6122 14 6 9.5316 5.6373 -0.6646 15 7 9.4865 4.9538 -1.9660 16 6 10.3346 4.1629 -2.6942 17 1 11.2571 3.8127 -2.2551 18 6 10.0088 3.8112 -3.9969 19 7 10.6499 2.8285 -4.5932 20 14 8.6604 4.7326 -4.9037 21 1 7.3558 4.0658 -4.6610 22 1 8.5999 6.1323 -4.4112 23 1 8.9533 4.7322 -6.3594 24 6 8.1322 5.4988 -2.1440 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.3880 2.1185 -0.0004 31 1 3.4826 3.5624 0.8888 32 1 3.4821 3.5619 -0.8912 33 1 5.5415 5.0556 -0.0031 34 1 7.6374 3.1606 1.8712 35 1 9.0909 4.0919 1.4366 36 1 7.6373 4.9339 2.0244 37 1 7.5005 6.4078 -0.2216 38 1 10.0370 5.0616 0.1108 39 1 9.8886 6.6653 -0.7264 40 1 11.3987 2.3990 -4.1509 41 1 8.1194 6.4906 -2.5960 42 1 7.4454 4.8051 -2.6290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755373444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:30 Heat of formation + Delta-G solvation = -48.174332 kcal Electronic energy + Delta-G solvation = -22672.085657 eV Core-core repulsion = 19266.903540 eV Total energy + Delta-G solvation = -3405.182116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45328 -40.61924 -39.47096 -36.34874 -35.93087 -34.51062 -32.93320 -31.65019 -30.06182 -29.50954 -26.90641 -25.36745 -24.12847 -23.20714 -21.98633 -21.25365 -20.51955 -19.41668 -18.36928 -17.85314 -17.26771 -16.99420 -16.83730 -16.61131 -15.99563 -15.83677 -15.51832 -15.25246 -14.84904 -14.57314 -14.52911 -14.33452 -13.69999 -13.37577 -13.25907 -13.12559 -12.87945 -12.77567 -12.67452 -12.58290 -12.38942 -12.32878 -11.87290 -11.66782 -11.37646 -11.16999 -10.99955 -10.84167 -10.44465 -10.06258 -9.99555 -9.20244 -8.62977 -5.44559 1.33974 1.47790 1.62694 1.66853 1.79912 1.91018 2.54887 2.55619 3.09387 3.17448 3.45874 3.62212 3.83635 4.04416 4.20051 4.21345 4.37193 4.39858 4.46561 4.48988 4.52897 4.60035 4.66027 4.70398 4.76713 4.81215 4.88308 4.97359 5.06888 5.16055 5.23243 5.27449 5.30181 5.45292 5.51590 5.68627 5.96347 6.62009 6.70709 6.73489 7.35733 7.36307 7.51997 8.30901 8.89108 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.004129 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.929781 B = 6779.876110 C = 7533.359323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.109 3.891 3 N -0.717 5.717 4 C 0.498 3.502 5 O -0.564 6.564 6 C -0.148 4.148 7 C 0.496 3.504 8 O -0.566 6.566 9 N -0.706 5.706 10 C 0.169 3.831 11 H 0.031 0.969 12 C -0.146 4.146 13 C -0.102 4.102 14 C 0.120 3.880 15 N -0.662 5.662 16 C -0.287 4.287 17 H 0.042 0.958 18 C -0.095 4.095 19 N -0.975 5.975 20 Si 1.106 2.894 21 H -0.290 1.290 22 H -0.238 1.238 23 H -0.303 1.303 24 C 0.096 3.904 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.420 0.580 31 H 0.173 0.827 32 H 0.162 0.838 33 H 0.421 0.579 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.243 0.757 41 H 0.071 0.929 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.356 9.655 14.564 31.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.372 5.372 4 C 0.283 3.717 5 O -0.441 6.441 6 C -0.190 4.190 7 C 0.282 3.718 8 O -0.443 6.443 9 N -0.361 5.361 10 C 0.064 3.936 11 H 0.050 0.950 12 C -0.204 4.204 13 C -0.122 4.122 14 C -0.005 4.005 15 N -0.391 5.391 16 C -0.415 4.415 17 H 0.060 0.940 18 C -0.286 4.286 19 N -0.621 5.621 20 Si 0.931 3.069 21 H -0.217 1.217 22 H -0.162 1.162 23 H -0.231 1.231 24 C -0.029 4.029 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.259 0.741 31 H 0.191 0.809 32 H 0.179 0.821 33 H 0.260 0.740 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.160 0.840 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -26.047 8.144 13.072 30.260 hybrid contribution 1.620 -0.423 0.940 1.920 sum -24.428 7.720 14.012 29.200 Atomic orbital electron populations 1.21929 0.91193 1.04086 1.03664 1.21314 0.96574 0.82900 1.00719 1.45879 1.06089 1.09650 1.75627 1.20794 0.82865 0.91793 0.76203 1.90890 1.56452 1.47834 1.48947 1.21642 0.91084 0.95459 1.10765 1.20936 0.91155 0.83580 0.76161 1.90888 1.71117 1.33236 1.49019 1.45789 1.06167 1.08868 1.75284 1.20296 0.80061 0.96746 0.96528 0.95049 1.21998 1.01141 1.02108 0.95193 1.22986 0.96771 0.97936 0.94479 1.22713 0.94309 0.96382 0.87106 1.46312 1.15381 1.56045 1.21388 1.19945 1.02366 1.23274 0.95885 0.93987 1.27211 1.06795 0.99197 0.95347 1.71004 1.23901 1.23976 1.43184 0.83298 0.72533 0.76865 0.74172 1.21738 1.16203 1.23123 1.23028 0.85978 0.97254 0.96597 0.90463 0.90859 0.90272 0.93826 0.93231 0.74148 0.80930 0.82066 0.74035 0.94615 0.92419 0.88691 0.83964 0.93687 0.91495 0.94798 0.91141 0.95016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.03 71.98 0.72 -0.43 16 2 C 0.11 1.80 6.39 86.38 0.55 2.36 16 3 N -0.72 -10.78 5.56 -463.06 -2.57 -13.35 16 4 C 0.50 12.35 7.82 87.66 0.69 13.04 16 5 O -0.56 -22.84 14.18 20.40 0.29 -22.55 16 6 C -0.15 -2.31 6.19 29.10 0.18 -2.13 16 7 C 0.50 14.69 7.79 87.65 0.68 15.37 16 8 O -0.57 -25.90 13.84 20.42 0.28 -25.62 16 9 N -0.71 -16.71 5.08 -442.54 -2.25 -18.96 16 10 C 0.17 5.44 2.43 44.99 0.11 5.55 16 11 H 0.03 1.48 7.36 -2.39 -0.02 1.46 16 12 C -0.15 -4.09 9.29 71.98 0.67 -3.42 16 13 C -0.10 -2.91 3.73 -10.37 -0.04 -2.95 16 14 C 0.12 4.31 8.08 83.18 0.67 4.99 16 15 N -0.66 -32.67 3.42 -737.93 -2.53 -35.20 16 16 C -0.29 -17.74 11.03 84.03 0.93 -16.81 16 17 H 0.04 2.83 8.06 -2.91 -0.02 2.80 16 18 C -0.09 -6.05 5.50 84.86 0.47 -5.59 16 19 N -0.97 -67.77 13.70 21.65 0.30 -67.47 16 20 Si 1.11 56.07 25.50 68.60 1.75 57.82 16 21 H -0.29 -14.30 6.97 99.48 0.69 -13.61 16 22 H -0.24 -10.19 5.66 99.48 0.56 -9.63 16 23 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 24 C 0.10 3.70 5.15 83.26 0.43 4.13 16 25 H 0.08 0.37 8.14 -2.39 -0.02 0.36 16 26 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.42 2.30 8.47 -92.71 -0.79 1.51 16 31 H 0.17 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.16 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.42 5.19 8.60 -92.71 -0.80 4.40 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.72 6.49 -2.39 -0.02 1.71 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.14 2.37 8.14 -2.38 -0.02 2.36 16 38 H 0.04 1.65 6.43 -2.39 -0.02 1.63 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.24 17.04 8.73 -92.71 -0.81 16.23 16 41 H 0.07 2.42 7.02 -2.38 -0.02 2.40 16 42 H 0.03 1.35 6.21 -2.39 -0.01 1.34 16 Total: -1.00 -103.82 341.38 0.58 -103.24 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -0.75 Total: 7.99 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.06 Total: 14.10 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -7.05 Total: -134.98 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: 0.57 Total: -48.18 kcal Atomic # 14 Polarization: 56.07 SS G_CDS: 1.75 Total: 57.82 kcal Total: -103.82 0.58 -103.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755373444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.071 kcal (2) G-P(sol) polarization free energy of solvation -103.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds