Wall clock time and date at job start Tue Mar 31 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46846 * 2 1 4 4 C 1.53000 * 109.47179 * 239.99803 * 2 1 3 5 5 N 1.46499 * 109.47322 * 184.99690 * 4 2 1 6 6 C 1.46500 * 119.99977 * 90.00126 * 5 4 2 7 7 C 1.34773 * 120.00296 * 270.00686 * 5 4 2 8 8 O 1.21347 * 120.00054 * 5.51837 * 7 5 4 9 9 C 1.49450 * 120.00236 * 185.52356 * 7 5 4 10 10 O 1.21351 * 119.99881 * 5.61320 * 9 7 5 11 11 N 1.34777 * 120.00033 * 185.61381 * 9 7 5 12 12 C 1.46510 * 119.99823 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46703 * 180.02562 * 12 11 9 14 14 C 1.53005 * 117.49471 * 243.61950 * 13 12 11 15 15 C 1.52996 * 60.00030 * 252.51351 * 14 13 12 16 16 N 1.46509 * 109.47446 * 119.99973 * 2 1 3 17 17 C 1.36932 * 119.99579 * 275.00173 * 16 2 1 18 18 H 1.08001 * 120.00277 * 0.02562 * 17 16 2 19 19 C 1.38813 * 119.99393 * 179.72229 * 17 16 2 20 20 N 1.31623 * 119.99819 * 180.27958 * 19 17 16 21 21 Si 1.86794 * 120.00416 * 0.27304 * 19 17 16 22 22 H 1.48499 * 109.47044 * 89.99702 * 21 19 17 23 23 H 1.48504 * 109.47624 * 210.00264 * 21 19 17 24 24 H 1.48504 * 109.46992 * 330.00401 * 21 19 17 25 25 H 1.09002 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47319 * 299.99827 * 1 2 3 27 27 H 1.09000 * 109.47498 * 59.99933 * 1 2 3 28 28 H 1.08993 * 109.47168 * 304.99858 * 4 2 1 29 29 H 1.08999 * 109.46646 * 65.00115 * 4 2 1 30 30 H 1.09001 * 109.47014 * 95.72427 * 6 5 4 31 31 H 1.09001 * 109.47327 * 215.72729 * 6 5 4 32 32 H 1.09002 * 109.47126 * 335.72525 * 6 5 4 33 33 H 0.96995 * 120.00394 * 0.02562 * 11 9 7 34 34 H 1.09003 * 109.47165 * 299.99736 * 12 11 9 35 35 H 1.09002 * 109.46652 * 60.00350 * 12 11 9 36 36 H 1.08994 * 115.55342 * 29.32951 * 13 12 11 37 37 H 1.08998 * 117.49927 * 0.02562 * 14 13 12 38 38 H 1.09002 * 117.49543 * 145.01795 * 14 13 12 39 39 H 1.09000 * 117.49557 * 252.51049 * 15 14 13 40 40 H 1.09004 * 117.49489 * 107.49393 * 15 14 13 41 41 H 0.96998 * 119.99876 * 94.99833 * 16 2 1 42 42 H 0.97001 * 119.99928 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1259 -1.9919 -0.5612 7 6 4.2675 0.1492 -1.7156 8 8 3.7531 1.1602 -2.1465 9 6 5.7522 -0.0141 -1.7670 10 8 6.2591 -1.0642 -1.4311 11 7 6.5281 1.0049 -2.1866 12 6 7.9836 0.8450 -2.2365 13 6 8.6218 2.1398 -2.7434 14 6 9.3791 2.0813 -4.0716 15 6 10.1498 2.2161 -2.7569 16 7 2.0184 -0.6906 1.1962 17 6 2.1492 -0.0074 2.3757 18 1 1.8918 1.0403 2.4243 19 6 2.6065 -0.6632 3.5105 20 7 2.7269 -0.0079 4.6456 21 14 3.0507 -2.4756 3.4267 22 1 4.4850 -2.6177 3.0693 23 1 2.8048 -3.1073 4.7480 24 1 2.2154 -3.1429 2.3960 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -1.7198 -1.2951 29 1 1.7516 -0.1583 -2.1369 30 1 4.3749 -2.7277 -1.3259 31 1 5.0347 -1.6821 -0.0453 32 1 3.4335 -2.4331 0.1558 33 1 6.1230 1.8444 -2.4548 34 1 8.3591 0.6220 -1.2378 35 1 8.2362 0.0267 -2.9109 36 1 8.0742 3.0543 -2.5158 37 1 9.4222 1.1204 -4.5844 38 1 9.3296 2.9574 -4.7182 39 1 10.6075 3.1810 -2.5385 40 1 10.7004 1.3438 -2.4046 41 1 2.2491 -1.6318 1.1526 42 1 3.0469 -0.4661 5.4385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755610619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:53 Heat of formation + Delta-G solvation = -40.457857 kcal Electronic energy + Delta-G solvation = -22874.424578 eV Core-core repulsion = 19469.577073 eV Total energy + Delta-G solvation = -3404.847505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.89420 -39.91419 -38.46978 -38.17303 -36.20610 -35.07246 -33.99686 -31.44874 -29.12998 -28.34497 -27.35515 -25.52879 -23.90289 -23.23517 -22.12495 -21.88084 -20.74422 -19.73182 -18.82084 -18.16724 -17.28392 -17.20304 -16.70638 -16.54393 -16.13095 -15.73744 -15.40648 -15.19918 -14.84655 -14.71427 -14.37164 -14.14439 -14.01190 -13.77032 -13.47194 -13.31513 -12.88690 -12.85218 -12.52696 -12.44808 -12.39326 -12.36263 -12.19152 -11.83778 -11.78483 -11.40435 -11.19433 -11.02846 -10.51280 -10.25700 -9.79414 -9.28875 -8.01890 -5.34710 0.33557 1.27686 1.33735 1.39877 1.45961 2.10952 2.41718 2.47703 2.86303 3.28964 3.31052 3.53811 3.63188 3.96644 3.97754 4.05990 4.15739 4.21917 4.30752 4.55765 4.57576 4.61623 4.66138 4.67674 4.79404 4.80798 4.85408 5.00541 5.02959 5.11136 5.20090 5.25035 5.26274 5.31425 5.55853 5.76844 5.91203 6.17612 6.21692 6.64116 6.90468 7.08358 7.82605 8.03358 9.20223 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017762 B = 0.004439 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.985965 B = 6306.823002 C = 6984.970474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.030 0.970 4 C 0.110 3.890 5 N -0.571 5.571 6 C 0.085 3.915 7 C 0.500 3.500 8 O -0.545 6.545 9 C 0.505 3.495 10 O -0.533 6.533 11 N -0.688 5.688 12 C 0.150 3.850 13 C -0.182 4.182 14 C -0.170 4.170 15 C -0.165 4.165 16 N -0.744 5.744 17 C -0.223 4.223 18 H 0.048 0.952 19 C -0.064 4.064 20 N -0.987 5.987 21 Si 0.944 3.056 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.243 1.243 25 H 0.063 0.937 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.365 0.635 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.857 -0.916 -20.484 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.048 0.952 4 C -0.013 4.013 5 N -0.302 5.302 6 C -0.057 4.057 7 C 0.283 3.717 8 O -0.424 6.424 9 C 0.286 3.714 10 O -0.411 6.411 11 N -0.342 5.342 12 C 0.027 3.973 13 C -0.201 4.201 14 C -0.206 4.206 15 C -0.202 4.202 16 N -0.390 5.390 17 C -0.354 4.354 18 H 0.066 0.934 19 C -0.255 4.255 20 N -0.638 5.638 21 Si 0.771 3.229 22 H -0.201 1.201 23 H -0.225 1.225 24 H -0.168 1.168 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.201 0.799 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.950 -0.983 -20.348 22.672 hybrid contribution 0.017 -0.312 0.859 0.914 sum 9.967 -1.294 -19.489 21.928 Atomic orbital electron populations 1.22191 0.95899 1.02105 1.01116 1.20808 0.93827 0.95136 0.85691 0.95210 1.22110 0.77369 1.03311 0.98473 1.47622 1.07325 1.20986 1.54256 1.22156 0.98349 0.87159 0.98075 1.20247 0.88253 0.83597 0.79647 1.90704 1.74959 1.27834 1.48870 1.20083 0.87906 0.84696 0.78725 1.90720 1.75457 1.27684 1.47199 1.45762 1.07735 1.16290 1.64387 1.21093 0.77159 0.97378 1.01654 1.22389 0.95978 0.97995 1.03727 1.23178 1.02843 1.04207 0.90420 1.23062 0.91781 1.04402 1.00986 1.42776 1.80150 1.09351 1.06727 1.18947 1.35006 0.94041 0.87453 0.93369 1.25457 1.02460 1.02521 0.95028 1.69893 1.55015 1.37772 1.01085 0.85593 0.78984 0.80920 0.77408 1.20129 1.22459 1.16768 0.91817 0.94845 0.90655 0.87210 0.87757 0.89769 0.91119 0.91768 0.74448 0.91483 0.90509 0.86575 0.88234 0.87480 0.87330 0.88094 0.79925 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.49 71.98 0.68 -4.30 16 2 C 0.15 5.83 3.20 44.99 0.14 5.97 16 3 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 4 C 0.11 3.22 4.98 86.38 0.43 3.65 16 5 N -0.57 -18.45 2.73 -848.36 -2.32 -20.76 16 6 C 0.09 2.65 8.75 127.77 1.12 3.77 16 7 C 0.50 16.73 7.72 87.27 0.67 17.41 16 8 O -0.54 -19.50 16.13 -3.24 -0.05 -19.55 16 9 C 0.51 15.49 7.71 87.27 0.67 16.16 16 10 O -0.53 -17.84 13.38 -3.25 -0.04 -17.88 16 11 N -0.69 -16.56 5.55 -464.38 -2.58 -19.14 16 12 C 0.15 2.93 5.96 86.38 0.51 3.44 16 13 C -0.18 -2.64 5.85 -10.79 -0.06 -2.71 16 14 C -0.17 -1.95 10.18 30.59 0.31 -1.64 16 15 C -0.16 -1.94 10.25 30.59 0.31 -1.62 16 16 N -0.74 -34.06 4.37 -322.93 -1.41 -35.47 16 17 C -0.22 -12.85 10.41 84.03 0.87 -11.98 16 18 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 19 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 20 N -0.99 -64.26 13.97 21.65 0.30 -63.96 16 21 Si 0.94 45.02 27.71 68.60 1.90 46.92 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.24 -10.12 6.51 99.48 0.65 -9.47 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.11 2.59 8.07 -2.39 -0.02 2.57 16 29 H 0.10 2.77 7.50 -2.39 -0.02 2.75 16 30 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 31 H 0.07 2.53 5.99 -2.39 -0.01 2.51 16 32 H 0.06 2.02 5.75 -2.39 -0.01 2.01 16 33 H 0.42 9.11 7.88 -92.71 -0.73 8.38 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.46 7.88 -2.39 -0.02 1.44 16 36 H 0.12 1.63 8.04 -2.39 -0.02 1.61 16 37 H 0.10 1.10 8.03 -2.39 -0.02 1.08 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.37 15.67 3.27 -92.71 -0.30 15.36 16 42 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -73.20 346.50 1.88 -71.32 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.06 Total: 33.69 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 6.14 Total: 24.84 kcal Atomic # 7 Polarization: -133.33 SS G_CDS: -6.00 Total: -139.33 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.10 Total: -37.43 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Total: -73.20 1.88 -71.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755610619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.860 kcal (2) G-P(sol) polarization free energy of solvation -73.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds