Wall clock time and date at job start Tue Mar 31 2020 02:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47395 * 2 1 4 4 C 1.53000 * 109.47256 * 119.99982 * 2 1 3 5 5 N 1.46506 * 109.47222 * 174.99912 * 4 2 1 6 6 C 1.46494 * 119.99971 * 89.99776 * 5 4 2 7 7 C 1.34780 * 119.99834 * 270.00351 * 5 4 2 8 8 O 1.21346 * 120.00378 * 5.12826 * 7 5 4 9 9 C 1.49453 * 119.99522 * 185.12580 * 7 5 4 10 10 O 1.21351 * 120.00000 * 5.61425 * 9 7 5 11 11 N 1.34772 * 119.99574 * 185.60850 * 9 7 5 12 12 C 1.46505 * 120.00091 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47641 * 180.02562 * 12 11 9 14 14 C 1.52991 * 117.49967 * 243.62461 * 13 12 11 15 15 C 1.52993 * 117.49951 * 174.99811 * 13 12 11 16 16 N 1.46502 * 109.47130 * 240.00041 * 2 1 3 17 17 C 1.36938 * 119.99981 * 85.00022 * 16 2 1 18 18 H 1.08002 * 119.99929 * 359.97438 * 17 16 2 19 19 C 1.38806 * 120.00196 * 180.02562 * 17 16 2 20 20 N 1.31618 * 120.00238 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47355 * 89.99644 * 21 19 17 23 23 H 1.48497 * 109.47345 * 209.99593 * 21 19 17 24 24 H 1.48503 * 109.47104 * 329.99793 * 21 19 17 25 25 H 1.09000 * 109.46747 * 299.99653 * 1 2 3 26 26 H 1.08999 * 109.46924 * 60.00053 * 1 2 3 27 27 H 1.09004 * 109.46664 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47184 * 55.00048 * 4 2 1 29 29 H 1.08998 * 109.47537 * 294.99883 * 4 2 1 30 30 H 1.09001 * 109.47083 * 95.68945 * 6 5 4 31 31 H 1.09002 * 109.47342 * 335.69072 * 6 5 4 32 32 H 1.08996 * 109.47497 * 215.68798 * 6 5 4 33 33 H 0.96999 * 120.00245 * 0.02562 * 11 9 7 34 34 H 1.09001 * 109.46793 * 300.00579 * 12 11 9 35 35 H 1.09001 * 109.46985 * 59.99690 * 12 11 9 36 36 H 1.09001 * 115.54673 * 29.33320 * 13 12 11 37 37 H 1.09000 * 117.50176 * 359.97438 * 14 13 12 38 38 H 1.08998 * 117.50066 * 145.01720 * 14 13 12 39 39 H 1.08995 * 117.50258 * 214.97738 * 15 13 12 40 40 H 1.09001 * 117.50358 * 0.02562 * 15 13 12 41 41 H 0.96997 * 120.00125 * 264.99824 * 16 2 1 42 42 H 0.96998 * 120.00612 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5002 -0.8264 1.1905 6 6 4.3344 0.2340 1.7611 7 6 4.0758 -1.8987 0.6115 8 8 3.3885 -2.7309 0.0569 9 6 5.5608 -2.0627 0.6524 10 8 6.2395 -1.2869 1.2926 11 7 6.1459 -3.0724 -0.0218 12 6 7.6015 -3.2337 0.0187 13 6 8.0041 -4.4456 -0.8239 14 6 8.6629 -5.6216 -0.1002 15 6 9.4993 -4.7147 -1.0051 16 7 2.0184 -0.6906 -1.1962 17 6 2.1492 -0.0075 -2.3758 18 1 1.8919 1.0403 -2.4243 19 6 2.6113 -0.6619 -3.5093 20 7 2.9244 -1.9389 -3.4503 21 14 2.7891 0.2698 -5.1185 22 1 4.1513 0.8550 -5.2040 23 1 2.5783 -0.6616 -6.2557 24 1 1.7790 1.3569 -5.1753 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6055 -1.7198 1.2952 29 1 1.7518 -0.1584 2.1370 30 1 4.6263 -0.0393 2.7752 31 1 3.7710 1.1668 1.7842 32 1 5.2267 0.3636 1.1487 33 1 5.6034 -3.6924 -0.5338 34 1 8.0774 -2.3387 -0.3820 35 1 7.9218 -3.3848 1.0496 36 1 7.3463 -4.6747 -1.6622 37 1 8.8099 -5.5318 0.9761 38 1 8.4384 -6.6249 -0.4623 39 1 9.8251 -5.1213 -1.9624 40 1 10.1962 -4.0286 -0.5238 41 1 2.2491 -1.6317 -1.1527 42 1 3.2477 -2.3962 -4.2423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755610620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:56 Heat of formation + Delta-G solvation = -20.114342 kcal Electronic energy + Delta-G solvation = -23237.337228 eV Core-core repulsion = 19833.371884 eV Total energy + Delta-G solvation = -3403.965344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33429 -38.47797 -37.44835 -36.08173 -34.59732 -33.65681 -31.86278 -28.66162 -27.81778 -26.93872 -25.82993 -23.63714 -22.63406 -22.46009 -21.04202 -19.98284 -19.18984 -17.54439 -17.01521 -16.65676 -15.92914 -15.67983 -15.20149 -14.91798 -14.40781 -14.20660 -14.00383 -13.69957 -13.43249 -13.12798 -12.76137 -12.42290 -12.16318 -12.12956 -11.93768 -11.70635 -11.54067 -11.44914 -11.21931 -10.84576 -10.78159 -10.62202 -10.61027 -10.34137 -10.31436 -9.98465 -9.52067 -8.98387 -8.91300 -8.79551 -8.11072 -6.79765 -5.61209 -2.90072 1.96383 2.74001 3.47670 3.52995 3.54309 3.56608 3.79307 3.91960 4.50030 4.67439 4.72320 4.75632 4.90041 5.14439 5.42839 5.45269 5.51265 5.56474 5.63655 5.68209 5.68624 5.71130 5.93475 5.96356 6.02138 6.03002 6.07182 6.20186 6.29518 6.40769 6.53142 6.69507 6.80356 6.93090 7.12498 7.40324 7.71695 7.79674 8.14841 8.51116 8.60405 9.68855 10.31448 10.71234 11.59207 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.005813 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.270934 B = 4815.978603 C = 6317.255073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.045 0.955 4 C 0.109 3.891 5 N -0.580 5.580 6 C 0.086 3.914 7 C 0.511 3.489 8 O -0.494 6.494 9 C 0.515 3.485 10 O -0.530 6.530 11 N -0.697 5.697 12 C 0.152 3.848 13 C -0.170 4.170 14 C -0.177 4.177 15 C -0.170 4.170 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.065 0.935 19 C -0.013 4.013 20 N -0.921 5.921 21 Si 0.899 3.101 22 H -0.293 1.293 23 H -0.293 1.293 24 H -0.284 1.284 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.417 0.583 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.399 0.601 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 -3.109 11.017 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.063 0.937 4 C -0.014 4.014 5 N -0.313 5.313 6 C -0.057 4.057 7 C 0.292 3.708 8 O -0.367 6.367 9 C 0.297 3.703 10 O -0.408 6.408 11 N -0.351 5.351 12 C 0.029 3.971 13 C -0.188 4.188 14 C -0.214 4.214 15 C -0.208 4.208 16 N -0.369 5.369 17 C -0.369 4.369 18 H 0.083 0.917 19 C -0.209 4.209 20 N -0.569 5.569 21 Si 0.731 3.269 22 H -0.220 1.220 23 H -0.219 1.219 24 H -0.209 1.209 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.254 0.746 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.238 0.762 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.478 -2.924 11.040 14.223 hybrid contribution -0.098 0.081 -1.354 1.360 sum 8.380 -2.843 9.686 13.120 Atomic orbital electron populations 1.22406 0.98948 1.01017 1.00019 1.20665 0.92130 0.95693 0.87356 0.93715 1.21992 0.78378 1.02342 0.98735 1.47368 1.07016 1.20224 1.56733 1.21986 0.95633 0.89310 0.98747 1.19741 0.88023 0.83089 0.79914 1.90742 1.63627 1.42588 1.39758 1.20272 0.89330 0.81105 0.79618 1.90665 1.65634 1.42364 1.42108 1.45716 1.07988 1.30770 1.50586 1.20918 0.79996 0.96890 0.99338 1.22485 0.96863 0.97056 1.02439 1.23084 1.04121 0.95524 0.98666 1.22941 0.92882 1.03196 1.01764 1.42799 1.77658 1.11813 1.04631 1.19215 1.36347 0.93645 0.87670 0.91725 1.24711 1.02617 0.95938 0.97675 1.69736 1.50681 1.08290 1.28193 0.86311 0.77614 0.78655 0.84339 1.22044 1.21905 1.20939 0.94541 0.92578 0.93331 0.90150 0.90498 0.92845 0.91928 0.89506 0.74568 0.90751 0.91150 0.86582 0.88601 0.88576 0.88418 0.88502 0.76181 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.49 37.16 0.35 -2.63 16 2 C 0.15 3.13 3.20 -67.93 -0.22 2.91 16 3 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 4 C 0.11 1.87 5.11 -4.04 -0.02 1.85 16 5 N -0.58 -10.50 2.77 -182.08 -0.51 -11.00 16 6 C 0.09 1.31 9.23 59.84 0.55 1.87 16 7 C 0.51 10.29 7.14 -11.58 -0.08 10.21 16 8 O -0.49 -11.30 13.54 5.50 0.07 -11.23 16 9 C 0.52 9.40 7.71 -11.59 -0.09 9.31 16 10 O -0.53 -9.75 13.37 5.50 0.07 -9.68 16 11 N -0.70 -11.03 5.55 -60.73 -0.34 -11.36 16 12 C 0.15 1.94 5.96 -4.04 -0.02 1.91 16 13 C -0.17 -1.83 5.85 -90.63 -0.53 -2.36 16 14 C -0.18 -1.58 10.18 -26.74 -0.27 -1.85 16 15 C -0.17 -1.51 10.25 -26.73 -0.27 -1.78 16 16 N -0.72 -18.87 4.52 -53.42 -0.24 -19.11 16 17 C -0.24 -6.80 9.93 -15.06 -0.15 -6.95 16 18 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.92 -28.38 13.06 55.49 0.72 -27.66 16 21 Si 0.90 22.99 29.55 -169.99 -5.02 17.97 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.45 7.50 -51.93 -0.39 1.06 16 29 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.06 0.83 8.03 -51.93 -0.42 0.42 16 32 H 0.09 1.48 5.96 -51.93 -0.31 1.17 16 33 H 0.42 6.71 7.89 -40.82 -0.32 6.39 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 36 H 0.12 1.33 8.04 -51.93 -0.42 0.91 16 37 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.40 11.19 4.80 -40.82 -0.20 11.00 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -33.54 348.73 -7.47 -41.01 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -6.64 Total: 13.81 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -0.85 Total: 12.01 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -0.36 Total: -69.14 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.15 Total: -20.91 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.54 -7.47 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755610620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.895 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds