Wall clock time and date at job start Tue Mar 31 2020 02:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47395 * 2 1 4 4 C 1.53000 * 109.47256 * 119.99982 * 2 1 3 5 5 N 1.46506 * 109.47222 * 174.99912 * 4 2 1 6 6 C 1.46494 * 119.99971 * 89.99776 * 5 4 2 7 7 C 1.34780 * 119.99834 * 270.00351 * 5 4 2 8 8 O 1.21346 * 120.00378 * 5.12826 * 7 5 4 9 9 C 1.49453 * 119.99522 * 185.12580 * 7 5 4 10 10 O 1.21351 * 120.00000 * 5.61425 * 9 7 5 11 11 N 1.34772 * 119.99574 * 185.60850 * 9 7 5 12 12 C 1.46505 * 120.00091 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47641 * 180.02562 * 12 11 9 14 14 C 1.52991 * 117.49967 * 243.62461 * 13 12 11 15 15 C 1.52993 * 117.49951 * 174.99811 * 13 12 11 16 16 N 1.46502 * 109.47130 * 240.00041 * 2 1 3 17 17 C 1.36938 * 119.99981 * 85.00022 * 16 2 1 18 18 H 1.08002 * 119.99929 * 359.97438 * 17 16 2 19 19 C 1.38806 * 120.00196 * 180.02562 * 17 16 2 20 20 N 1.31618 * 120.00238 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47355 * 89.99644 * 21 19 17 23 23 H 1.48497 * 109.47345 * 209.99593 * 21 19 17 24 24 H 1.48503 * 109.47104 * 329.99793 * 21 19 17 25 25 H 1.09000 * 109.46747 * 299.99653 * 1 2 3 26 26 H 1.08999 * 109.46924 * 60.00053 * 1 2 3 27 27 H 1.09004 * 109.46664 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47184 * 55.00048 * 4 2 1 29 29 H 1.08998 * 109.47537 * 294.99883 * 4 2 1 30 30 H 1.09001 * 109.47083 * 95.68945 * 6 5 4 31 31 H 1.09002 * 109.47342 * 335.69072 * 6 5 4 32 32 H 1.08996 * 109.47497 * 215.68798 * 6 5 4 33 33 H 0.96999 * 120.00245 * 0.02562 * 11 9 7 34 34 H 1.09001 * 109.46793 * 300.00579 * 12 11 9 35 35 H 1.09001 * 109.46985 * 59.99690 * 12 11 9 36 36 H 1.09001 * 115.54673 * 29.33320 * 13 12 11 37 37 H 1.09000 * 117.50176 * 359.97438 * 14 13 12 38 38 H 1.08998 * 117.50066 * 145.01720 * 14 13 12 39 39 H 1.08995 * 117.50258 * 214.97738 * 15 13 12 40 40 H 1.09001 * 117.50358 * 0.02562 * 15 13 12 41 41 H 0.96997 * 120.00125 * 264.99824 * 16 2 1 42 42 H 0.96998 * 120.00612 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5002 -0.8264 1.1905 6 6 4.3344 0.2340 1.7611 7 6 4.0758 -1.8987 0.6115 8 8 3.3885 -2.7309 0.0569 9 6 5.5608 -2.0627 0.6524 10 8 6.2395 -1.2869 1.2926 11 7 6.1459 -3.0724 -0.0218 12 6 7.6015 -3.2337 0.0187 13 6 8.0041 -4.4456 -0.8239 14 6 8.6629 -5.6216 -0.1002 15 6 9.4993 -4.7147 -1.0051 16 7 2.0184 -0.6906 -1.1962 17 6 2.1492 -0.0075 -2.3758 18 1 1.8919 1.0403 -2.4243 19 6 2.6113 -0.6619 -3.5093 20 7 2.9244 -1.9389 -3.4503 21 14 2.7891 0.2698 -5.1185 22 1 4.1513 0.8550 -5.2040 23 1 2.5783 -0.6616 -6.2557 24 1 1.7790 1.3569 -5.1753 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6055 -1.7198 1.2952 29 1 1.7518 -0.1584 2.1370 30 1 4.6263 -0.0393 2.7752 31 1 3.7710 1.1668 1.7842 32 1 5.2267 0.3636 1.1487 33 1 5.6034 -3.6924 -0.5338 34 1 8.0774 -2.3387 -0.3820 35 1 7.9218 -3.3848 1.0496 36 1 7.3463 -4.6747 -1.6622 37 1 8.8099 -5.5318 0.9761 38 1 8.4384 -6.6249 -0.4623 39 1 9.8251 -5.1213 -1.9624 40 1 10.1962 -4.0286 -0.5238 41 1 2.2491 -1.6317 -1.1527 42 1 3.2477 -2.3962 -4.2423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755610620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:56 Heat of formation + Delta-G solvation = -43.603893 kcal Electronic energy + Delta-G solvation = -23238.355811 eV Core-core repulsion = 19833.371884 eV Total energy + Delta-G solvation = -3404.983927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76563 -39.82304 -38.44584 -37.68524 -36.17423 -35.02692 -33.80589 -30.59252 -29.03819 -28.26782 -27.15490 -25.70939 -23.95388 -23.24016 -22.05099 -21.52422 -20.58573 -19.36435 -18.58101 -18.04069 -17.23047 -17.05944 -16.74903 -16.42216 -15.89596 -15.60656 -15.31010 -15.16211 -14.72998 -14.55834 -14.21117 -13.90771 -13.78903 -13.56787 -13.40853 -13.03046 -12.85846 -12.76570 -12.48387 -12.44727 -12.37216 -12.28737 -12.11466 -11.82762 -11.56339 -11.39825 -11.17609 -10.93210 -10.36918 -10.18968 -9.57392 -8.88340 -7.82899 -5.11242 0.49158 1.40664 1.44042 1.45373 1.53458 2.28796 2.54373 2.59238 2.88599 3.41881 3.46222 3.63353 3.96040 3.96399 4.06254 4.17883 4.23286 4.35062 4.49453 4.57210 4.61517 4.67373 4.70127 4.79073 4.79343 4.90543 4.96936 5.01620 5.12011 5.15024 5.26019 5.26415 5.32440 5.45327 5.55959 5.64000 6.01803 6.30274 6.37286 6.75881 7.07371 7.45012 8.28733 8.54846 9.38082 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.005813 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.270934 B = 4815.978603 C = 6317.255073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.046 0.954 4 C 0.112 3.888 5 N -0.579 5.579 6 C 0.086 3.914 7 C 0.497 3.503 8 O -0.532 6.532 9 C 0.510 3.490 10 O -0.536 6.536 11 N -0.692 5.692 12 C 0.153 3.847 13 C -0.190 4.190 14 C -0.167 4.167 15 C -0.159 4.159 16 N -0.739 5.739 17 C -0.237 4.237 18 H 0.068 0.932 19 C -0.076 4.076 20 N -0.955 5.955 21 Si 0.963 3.037 22 H -0.292 1.292 23 H -0.297 1.297 24 H -0.272 1.272 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.414 0.586 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.387 0.613 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.699 -2.071 12.295 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.065 0.935 4 C -0.010 4.010 5 N -0.311 5.311 6 C -0.056 4.056 7 C 0.280 3.720 8 O -0.408 6.408 9 C 0.291 3.709 10 O -0.414 6.414 11 N -0.344 5.344 12 C 0.031 3.969 13 C -0.209 4.209 14 C -0.204 4.204 15 C -0.197 4.197 16 N -0.385 5.385 17 C -0.369 4.369 18 H 0.086 0.914 19 C -0.269 4.269 20 N -0.606 5.606 21 Si 0.793 3.207 22 H -0.220 1.220 23 H -0.224 1.224 24 H -0.197 1.197 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.225 0.775 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.836 -1.831 12.365 15.307 hybrid contribution -0.227 -0.197 -1.663 1.689 sum 8.609 -2.028 10.702 13.884 Atomic orbital electron populations 1.22236 0.97007 1.00800 1.01246 1.20997 0.93429 0.95545 0.86719 0.93549 1.22057 0.77842 1.02155 0.98996 1.47578 1.07734 1.20090 1.55711 1.22106 0.94875 0.89516 0.99098 1.20219 0.88851 0.83316 0.79627 1.90715 1.64520 1.44019 1.41568 1.20106 0.88730 0.81797 0.80281 1.90651 1.65441 1.42651 1.42666 1.45849 1.09316 1.29755 1.49473 1.21065 0.77948 0.97570 1.00340 1.22379 0.98306 0.97504 1.02668 1.23173 1.02792 0.95246 0.99156 1.23057 0.91441 1.02856 1.02314 1.43048 1.78093 1.11590 1.05751 1.19577 1.34708 0.93856 0.88790 0.91364 1.25471 1.03592 0.96867 1.00933 1.69913 1.52362 1.09770 1.28535 0.85296 0.77572 0.77524 0.80314 1.21973 1.22412 1.19665 0.89975 0.94607 0.94276 0.91277 0.85437 0.90743 0.89464 0.91543 0.74948 0.91541 0.90082 0.87780 0.87778 0.87744 0.87519 0.87520 0.77503 0.94640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 9.49 71.98 0.68 -4.60 16 2 C 0.14 5.63 3.20 44.99 0.14 5.77 16 3 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 4 C 0.11 3.63 5.11 86.38 0.44 4.07 16 5 N -0.58 -20.30 2.77 -848.35 -2.35 -22.66 16 6 C 0.09 2.44 9.23 127.77 1.18 3.62 16 7 C 0.50 20.30 7.14 87.27 0.62 20.93 16 8 O -0.53 -25.18 13.54 -3.23 -0.04 -25.23 16 9 C 0.51 18.85 7.71 87.27 0.67 19.53 16 10 O -0.54 -19.57 13.37 -3.25 -0.04 -19.61 16 11 N -0.69 -22.47 5.55 -464.40 -2.58 -25.04 16 12 C 0.15 3.90 5.96 86.38 0.51 4.41 16 13 C -0.19 -4.03 5.85 -10.80 -0.06 -4.09 16 14 C -0.17 -2.73 10.18 30.59 0.31 -2.42 16 15 C -0.16 -2.58 10.25 30.59 0.31 -2.27 16 16 N -0.74 -38.86 4.52 -322.93 -1.46 -40.32 16 17 C -0.24 -13.64 9.93 84.03 0.83 -12.81 16 18 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 20 N -0.96 -60.46 13.06 21.65 0.28 -60.18 16 21 Si 0.96 47.90 29.55 68.60 2.03 49.93 16 22 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 25 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.07 2.43 7.50 -2.39 -0.02 2.41 16 29 H 0.13 2.84 8.07 -2.39 -0.02 2.82 16 30 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 31 H 0.09 2.04 8.03 -2.39 -0.02 2.02 16 32 H 0.07 2.20 5.96 -2.39 -0.01 2.19 16 33 H 0.41 14.01 7.89 -92.71 -0.73 13.28 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.88 7.88 -2.39 -0.02 1.86 16 36 H 0.10 2.46 8.04 -2.39 -0.02 2.44 16 37 H 0.10 1.54 8.03 -2.39 -0.02 1.52 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.39 22.25 4.80 -92.71 -0.44 21.81 16 42 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -73.61 348.73 1.80 -71.81 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: -0.15 Total: 43.21 kcal Atomic # 6 Polarization: 21.96 SS G_CDS: 6.12 Total: 28.08 kcal Atomic # 7 Polarization: -142.08 SS G_CDS: -6.11 Total: -148.19 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -0.09 Total: -44.84 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -73.61 1.80 -71.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755610620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.204 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds