Wall clock time and date at job start Tue Mar 31 2020 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46896 * 109.47456 * 2 1 4 4 C 1.46956 * 111.00058 * 190.00419 * 3 2 1 5 5 C 1.53049 * 109.36630 * 183.19141 * 4 3 2 6 6 N 1.46963 * 109.36171 * 301.59816 * 5 4 3 7 7 C 1.46896 * 111.00029 * 183.18886 * 6 5 4 8 8 C 1.52996 * 109.47255 * 169.99612 * 7 6 5 9 9 C 1.50702 * 109.47159 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 8 7 12 12 C 1.46506 * 120.00264 * 0.28128 * 11 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 14 14 C 1.50697 * 109.46949 * 90.00203 * 13 11 9 15 15 H 1.08004 * 120.00186 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00081 * 180.02562 * 14 13 11 17 17 N 1.31517 * 119.99813 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00047 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47231 * 89.99796 * 18 16 14 20 20 H 1.48499 * 109.47342 * 210.00322 * 18 16 14 21 21 H 1.48505 * 109.46935 * 330.00024 * 18 16 14 22 22 C 1.46948 * 110.88098 * 59.31807 * 6 5 4 23 23 C 1.46961 * 111.00056 * 313.80020 * 3 2 1 24 24 H 1.08999 * 109.47141 * 300.00198 * 1 2 3 25 25 H 1.09002 * 109.47411 * 59.99403 * 1 2 3 26 26 H 1.08994 * 109.47462 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46699 * 239.99860 * 2 1 3 28 28 H 1.09002 * 109.47411 * 120.00597 * 2 1 3 29 29 H 1.08999 * 109.49195 * 63.22174 * 4 3 2 30 30 H 1.09002 * 109.48564 * 303.15617 * 4 3 2 31 31 H 1.09001 * 109.49268 * 181.63068 * 5 4 3 32 32 H 1.09000 * 109.49067 * 61.56021 * 5 4 3 33 33 H 1.09004 * 109.47112 * 49.99605 * 7 6 5 34 34 H 1.09000 * 109.47386 * 289.99993 * 7 6 5 35 35 H 1.09004 * 109.47066 * 59.99965 * 8 7 6 36 36 H 1.08994 * 109.47405 * 299.99795 * 8 7 6 37 37 H 1.08998 * 109.46921 * 89.99095 * 12 11 9 38 38 H 1.08994 * 109.46996 * 209.99677 * 12 11 9 39 39 H 1.09001 * 109.46578 * 329.99540 * 12 11 9 40 40 H 1.09001 * 109.47567 * 210.00057 * 13 11 9 41 41 H 1.09005 * 109.47076 * 330.00563 * 13 11 9 42 42 H 0.97004 * 119.99796 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.48998 * 60.64771 * 22 6 5 44 44 H 1.09003 * 109.49079 * 180.70973 * 22 6 5 45 45 H 1.09000 * 109.48854 * 296.77870 * 23 3 2 46 46 H 1.09001 * 109.48531 * 56.84334 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4691 1.4310 -0.2383 5 6 3.9518 2.8808 -0.1517 6 7 3.2320 3.6940 -1.1419 7 6 3.7217 5.0789 -1.1419 8 6 3.1352 5.8273 -2.3406 9 6 3.6372 7.2482 -2.3402 10 8 4.3903 7.6252 -1.4674 11 7 3.2540 8.0985 -3.3132 12 6 2.3447 7.6432 -4.3678 13 6 3.7467 9.4782 -3.3162 14 6 5.0288 9.5519 -4.1047 15 1 5.4358 8.6603 -4.5585 16 6 5.6825 10.7576 -4.2467 17 7 6.8011 10.8220 -4.9352 18 14 4.9791 12.2996 -3.4612 19 1 5.5245 12.4486 -2.0882 20 1 5.3539 13.4844 -4.2742 21 1 3.4994 12.1914 -3.3970 22 6 1.7827 3.6478 -0.9036 23 6 1.3000 2.1981 -0.9903 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.6875 1.0336 -1.2295 30 1 3.9806 0.8318 0.5149 31 1 5.0216 2.9208 -0.3568 32 1 3.7580 3.2695 0.8480 33 1 4.8097 5.0796 -1.2100 34 1 3.4152 5.5727 -0.2198 35 1 2.0473 5.8266 -2.2725 36 1 3.4419 5.3335 -3.2626 37 1 1.3140 7.8190 -4.0597 38 1 2.5485 8.1939 -5.2860 39 1 2.4951 6.5777 -4.5420 40 1 3.0013 10.1292 -3.7731 41 1 3.9314 9.8003 -2.2914 42 1 7.2608 11.6703 -5.0355 43 1 1.5643 4.0452 0.0875 44 1 1.2711 4.2471 -1.6568 45 1 1.4938 1.8093 -1.9900 46 1 0.2302 2.1580 -0.7852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:01 Heat of formation + Delta-G solvation = -44.784158 kcal Electronic energy + Delta-G solvation = -22784.794649 eV Core-core repulsion = 19515.592636 eV Total energy + Delta-G solvation = -3269.202013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91482 -40.17968 -37.22703 -36.57738 -34.72263 -33.24581 -31.86588 -31.17970 -29.99838 -27.47662 -26.95258 -25.02776 -24.60299 -22.91720 -22.31681 -20.67742 -19.90399 -19.15411 -18.16148 -17.18335 -16.99493 -16.89589 -16.27607 -16.02048 -15.72570 -15.69008 -15.47898 -15.28658 -14.64804 -14.59719 -14.09508 -13.97626 -13.65498 -13.59380 -13.34920 -13.24886 -13.06252 -12.81213 -12.61336 -12.54153 -12.36059 -12.27326 -12.18331 -12.02425 -11.91908 -11.75158 -11.58974 -11.45515 -10.83972 -10.66879 -9.44701 -9.38869 -9.23263 -8.34718 -6.39879 1.32138 1.36474 1.44969 1.79348 2.27113 2.30650 2.90619 2.96139 2.99764 3.78267 3.84469 3.92708 4.04623 4.11498 4.20497 4.27880 4.37650 4.41325 4.47176 4.50111 4.54398 4.62243 4.63636 4.67732 4.79686 4.83960 4.87003 4.90321 4.93471 4.96506 4.96925 5.01813 5.04350 5.12027 5.17356 5.33444 5.45440 5.62101 5.90542 5.98769 6.15921 6.18504 6.23291 6.61397 6.70165 7.20731 7.41990 8.82342 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.039936 B = 0.002908 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.951110 B = 9626.626201 C = 9880.529082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 N -0.554 5.554 4 C 0.064 3.936 5 C 0.055 3.945 6 N -0.541 5.541 7 C 0.082 3.918 8 C -0.114 4.114 9 C 0.496 3.504 10 O -0.599 6.599 11 N -0.608 5.608 12 C 0.077 3.923 13 C 0.222 3.778 14 C -0.536 4.536 15 H 0.027 0.973 16 C 0.009 3.991 17 N -0.946 5.946 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.274 1.274 21 H -0.237 1.237 22 C 0.049 3.951 23 C 0.057 3.943 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.017 0.983 42 H 0.268 0.732 43 H 0.032 0.968 44 H 0.095 0.905 45 H 0.039 0.961 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.922 -21.102 7.504 28.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 N -0.280 5.280 4 C -0.064 4.064 5 C -0.073 4.073 6 N -0.266 5.266 7 C -0.047 4.047 8 C -0.154 4.154 9 C 0.285 3.715 10 O -0.481 6.481 11 N -0.339 5.339 12 C -0.065 4.065 13 C 0.099 3.901 14 C -0.575 4.575 15 H 0.046 0.954 16 C -0.189 4.189 17 N -0.586 5.586 18 Si 0.773 3.227 19 H -0.203 1.203 20 H -0.199 1.199 21 H -0.160 1.160 22 C -0.079 4.079 23 C -0.071 4.071 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.113 0.887 45 H 0.058 0.942 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.435 -20.802 7.861 27.652 hybrid contribution 0.754 1.000 0.070 1.254 sum -15.681 -19.802 7.931 26.475 Atomic orbital electron populations 1.21904 0.94018 1.02700 1.02385 1.22126 0.96597 0.88026 1.00977 1.62274 1.04060 1.11897 1.49763 1.22100 0.88327 0.95475 1.00491 1.22178 0.98461 0.93326 0.93312 1.62172 1.04969 1.09792 1.49656 1.21585 0.99498 0.87424 0.96178 1.21541 1.03271 0.89236 1.01368 1.21363 0.80317 0.88904 0.80898 1.90633 1.38234 1.79395 1.39801 1.47986 1.47113 1.12178 1.26666 1.21989 0.92963 1.01455 0.90117 1.19340 0.93792 0.80794 0.96144 1.21569 1.08161 0.94946 1.32801 0.95445 1.25892 0.94909 1.02866 0.95260 1.70057 1.18526 1.27463 1.42565 0.85683 0.80742 0.78043 0.78277 1.20290 1.19924 1.15992 1.22346 0.87640 0.97452 1.00419 1.22264 0.99261 0.91920 0.93628 0.92241 0.92079 0.90966 0.94818 0.90349 0.94243 0.89151 0.90194 0.94821 0.92104 0.95417 0.86256 0.87100 0.90031 0.91689 0.89138 0.93078 0.96447 0.92260 0.94922 0.88680 0.94227 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.18 71.98 0.66 -0.90 16 2 C 0.05 0.65 6.00 86.30 0.52 1.16 16 3 N -0.55 -9.38 4.86 -895.72 -4.35 -13.73 16 4 C 0.06 1.13 5.58 86.31 0.48 1.61 16 5 C 0.06 1.18 5.61 86.31 0.48 1.67 16 6 N -0.54 -12.42 4.71 -895.74 -4.22 -16.64 16 7 C 0.08 2.33 4.25 86.30 0.37 2.69 16 8 C -0.11 -3.14 4.19 29.85 0.12 -3.02 16 9 C 0.50 20.14 7.67 87.66 0.67 20.81 16 10 O -0.60 -30.52 15.56 -3.04 -0.05 -30.57 16 11 N -0.61 -24.73 2.86 -851.12 -2.43 -27.16 16 12 C 0.08 2.13 10.25 127.77 1.31 3.44 16 13 C 0.22 10.95 4.23 85.63 0.36 11.31 16 14 C -0.54 -32.06 9.94 25.60 0.25 -31.81 16 15 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 16 C 0.01 0.51 5.47 84.66 0.46 0.98 16 17 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 18 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 22 C 0.05 0.93 5.41 86.31 0.47 1.40 16 23 C 0.06 0.91 4.93 86.31 0.43 1.34 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.60 6.26 -2.39 -0.01 0.59 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.03 0.44 8.08 -2.38 -0.02 0.42 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.70 8.07 -2.39 -0.02 1.68 16 32 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 2.00 7.98 -2.38 -0.02 1.98 16 34 H 0.03 0.87 8.08 -2.39 -0.02 0.85 16 35 H 0.12 2.47 6.46 -2.38 -0.02 2.45 16 36 H 0.11 2.80 7.40 -2.39 -0.02 2.78 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 39 H 0.09 2.00 6.43 -2.39 -0.02 1.98 16 40 H 0.05 2.29 7.13 -2.39 -0.02 2.28 16 41 H 0.02 0.93 6.85 -2.38 -0.02 0.91 16 42 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 43 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.10 1.52 6.34 -2.39 -0.02 1.51 16 45 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.10 1.28 5.99 -2.39 -0.01 1.27 16 Total: -1.00 -77.50 355.64 -1.40 -78.91 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.87 Total: 11.95 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 6.59 Total: 10.68 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -10.70 Total: -117.82 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.05 Total: -30.57 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -77.50 -1.40 -78.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.121 kcal (2) G-P(sol) polarization free energy of solvation -77.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds