Wall clock time and date at job start Tue Mar 31 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46915 * 2 1 4 4 C 1.46907 * 110.99584 * 296.75628 * 3 2 1 5 5 C 1.53007 * 109.47028 * 288.21017 * 4 3 2 6 6 C 1.46895 * 111.00192 * 60.70993 * 3 2 1 7 7 C 1.52993 * 109.47244 * 66.04447 * 6 3 2 8 8 H 1.08992 * 110.29008 * 305.70274 * 7 6 3 9 9 C 1.54264 * 110.32214 * 67.83115 * 7 6 3 10 10 C 1.54379 * 105.06314 * 118.89747 * 9 7 6 11 11 N 1.48562 * 104.59386 * 23.84976 * 10 9 7 12 12 C 1.46900 * 110.99671 * 200.96295 * 11 10 9 13 13 C 1.50701 * 109.47036 * 290.12247 * 12 11 10 14 14 O 1.21286 * 120.00025 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99900 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99889 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00286 * 0.02562 * 16 15 13 18 18 C 1.38951 * 119.99851 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00263 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99949 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47056 * 90.00384 * 20 18 16 22 22 H 1.48493 * 109.47264 * 210.00458 * 20 18 16 23 23 H 1.48506 * 109.47078 * 330.00610 * 20 18 16 24 24 C 1.48718 * 104.28907 * 320.57694 * 11 10 9 25 25 H 1.08998 * 109.46748 * 61.12410 * 1 2 3 26 26 H 1.09004 * 109.46798 * 181.11948 * 1 2 3 27 27 H 1.08991 * 109.47128 * 301.11807 * 1 2 3 28 28 H 1.09005 * 109.47153 * 239.99999 * 2 1 3 29 29 H 1.08997 * 109.47152 * 119.99600 * 2 1 3 30 30 H 1.08991 * 109.47351 * 48.21574 * 4 3 2 31 31 H 1.09000 * 109.46554 * 168.21340 * 4 3 2 32 32 H 1.08997 * 109.46858 * 59.81170 * 5 4 3 33 33 H 1.08993 * 109.46762 * 179.81613 * 5 4 3 34 34 H 1.09001 * 109.46908 * 299.81335 * 5 4 3 35 35 H 1.09003 * 109.47161 * 306.04719 * 6 3 2 36 36 H 1.09003 * 109.47138 * 186.04948 * 6 3 2 37 37 H 1.09004 * 110.32399 * 237.79488 * 9 7 6 38 38 H 1.09001 * 110.32400 * 359.97438 * 9 7 6 39 39 H 1.08991 * 110.41361 * 142.63144 * 10 9 7 40 40 H 1.09002 * 110.40689 * 264.95494 * 10 9 7 41 41 H 1.08999 * 109.47530 * 50.12859 * 12 11 10 42 42 H 1.09008 * 109.46875 * 170.13132 * 12 11 10 43 43 H 0.96994 * 120.00066 * 0.02562 * 15 13 12 44 44 H 0.96997 * 120.00581 * 179.97438 * 19 18 16 45 45 H 1.09007 * 110.38720 * 280.64289 * 24 11 10 46 46 H 1.09000 * 110.50982 * 158.14927 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6130 2.0871 -1.2247 5 6 2.4166 1.5504 -2.4110 6 6 1.5626 2.1050 1.1960 7 6 2.2088 1.4905 2.4393 8 1 2.0157 0.4184 2.4748 9 6 3.7273 1.7620 2.4435 10 6 3.9836 2.5888 3.7218 11 7 2.8508 2.2487 4.6208 12 6 2.6629 3.2844 5.6456 13 6 3.8117 3.2411 6.6200 14 8 4.6998 2.4279 6.4748 15 7 3.8528 4.1068 7.6522 16 6 4.8982 4.0677 8.5383 17 1 5.6890 3.3437 8.4091 18 6 4.9402 4.9598 9.6028 19 7 3.9778 5.8406 9.7605 20 14 6.3650 4.9072 10.8099 21 1 7.4480 5.8063 10.3368 22 1 5.8982 5.3552 12.1465 23 1 6.8814 3.5181 10.9058 24 6 1.6732 2.1743 3.7156 25 1 -0.3633 0.4963 -0.8999 26 1 -0.3633 -1.0275 0.0201 27 1 -0.3633 0.5311 0.8797 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5501 1.9229 -1.4017 31 1 1.8017 3.1546 -1.1111 32 1 2.2305 0.4822 -2.5224 33 1 2.1125 2.0690 -3.3201 34 1 3.4792 1.7177 -2.2354 35 1 0.4781 2.0277 1.2744 36 1 1.8474 3.1544 1.1195 37 1 4.2797 0.8231 2.4828 38 1 4.0124 2.3326 1.5596 39 1 4.9306 2.3003 4.1776 40 1 3.9822 3.6543 3.4919 41 1 2.6268 4.2643 5.1696 42 1 1.7286 3.1040 6.1773 43 1 3.1428 4.7573 7.7682 44 1 4.0069 6.4631 10.5038 45 1 1.3072 3.1750 3.4856 46 1 0.8829 1.5736 4.1656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076004487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:13 Heat of formation + Delta-G solvation = -28.078022 kcal Electronic energy + Delta-G solvation = -22755.291155 eV Core-core repulsion = 19486.813575 eV Total energy + Delta-G solvation = -3268.477580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.58912 -38.37983 -37.17063 -33.90274 -32.72087 -31.55233 -31.14821 -29.78167 -28.54237 -26.76192 -24.92478 -24.28681 -23.38248 -21.06031 -20.50982 -19.54385 -18.87711 -17.77547 -16.59275 -16.23816 -15.96876 -15.34837 -15.11438 -14.46011 -14.45517 -14.28511 -13.84837 -13.55097 -13.39679 -13.23043 -12.76614 -12.49078 -12.44803 -12.32367 -12.07444 -11.74251 -11.65099 -11.55392 -11.37392 -11.35332 -11.16826 -11.06500 -10.85390 -10.65105 -10.42075 -10.34485 -10.20888 -10.17269 -9.44278 -8.45403 -8.41397 -7.94380 -7.87167 -6.37094 -3.77575 3.20935 3.29067 3.35388 3.65278 3.97245 4.13616 4.34227 4.64437 4.67643 4.88181 4.92071 4.95922 4.97625 5.05252 5.15832 5.20899 5.28815 5.29425 5.36811 5.39689 5.51969 5.56352 5.56844 5.69225 5.73377 5.78416 5.82253 5.84582 5.87037 5.93551 5.98242 6.08565 6.15223 6.31454 6.38863 6.44397 6.61639 6.89130 6.90457 7.26622 7.34766 7.59610 8.11605 8.67666 9.23380 9.60249 10.12781 10.80961 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.044733 B = 0.002720 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.788709 B =10290.254474 C =10412.444969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 N -0.532 5.532 4 C 0.044 3.956 5 C -0.146 4.146 6 C 0.059 3.941 7 C -0.086 4.086 8 H 0.078 0.922 9 C -0.105 4.105 10 C 0.035 3.965 11 N -0.485 5.485 12 C 0.035 3.965 13 C 0.447 3.553 14 O -0.577 6.577 15 N -0.567 5.567 16 C -0.296 4.296 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.904 5.904 20 Si 0.929 3.071 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.035 3.965 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.033 0.967 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.040 0.960 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.772 -6.076 -20.728 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.083 4.083 3 N -0.256 5.256 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.069 4.069 7 C -0.105 4.105 8 H 0.097 0.903 9 C -0.144 4.144 10 C -0.093 4.093 11 N -0.209 5.209 12 C -0.097 4.097 13 C 0.232 3.768 14 O -0.460 6.460 15 N -0.205 5.205 16 C -0.426 4.426 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.546 5.546 20 Si 0.757 3.243 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.094 4.094 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.576 -6.985 -20.363 22.822 hybrid contribution -0.964 1.374 0.395 1.724 sum -8.540 -5.612 -19.968 22.431 Atomic orbital electron populations 1.22430 0.98535 1.02363 1.01998 1.22216 0.92664 0.90463 1.02971 1.62212 1.59457 1.02231 1.01676 1.22131 0.97538 0.98411 0.90257 1.21759 1.01142 1.00915 0.96579 1.22264 0.97332 0.97789 0.89514 1.21865 0.96126 1.00253 0.92272 0.90343 1.22235 0.94639 1.00477 0.97012 1.23194 0.96974 0.96992 0.92099 1.65148 1.02542 1.43019 1.10143 1.22050 0.99444 0.93531 0.94711 1.19723 0.88456 0.84552 0.84069 1.90500 1.40159 1.39805 1.75538 1.41863 1.23467 1.31386 1.23736 1.19694 1.01776 1.16955 1.04174 0.87961 1.25249 0.98449 0.95890 0.98460 1.69611 1.32765 1.20220 1.31976 0.85867 0.80573 0.78758 0.79149 1.20468 1.20969 1.19418 1.23183 0.94529 0.99062 0.92645 0.92633 0.92120 0.92128 0.90770 0.90176 0.94472 0.91130 0.92812 0.92639 0.91845 0.94363 0.90946 0.91478 0.91041 0.88577 0.94841 0.93402 0.89469 0.77553 0.91954 0.94209 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 9.28 37.16 0.34 -1.10 16 2 C 0.04 0.37 5.71 -3.82 -0.02 0.35 16 3 N -0.53 -4.88 4.46 -234.62 -1.05 -5.93 16 4 C 0.04 0.35 5.56 -3.82 -0.02 0.33 16 5 C -0.15 -1.04 9.96 37.16 0.37 -0.67 16 6 C 0.06 0.57 3.78 -3.83 -0.01 0.56 16 7 C -0.09 -1.00 2.99 -89.24 -0.27 -1.27 16 8 H 0.08 0.92 6.35 -51.93 -0.33 0.59 16 9 C -0.11 -1.41 6.49 -25.35 -0.16 -1.58 16 10 C 0.04 0.59 5.80 -2.18 -0.01 0.58 16 11 N -0.48 -8.51 5.06 -231.26 -1.17 -9.68 16 12 C 0.03 0.65 5.30 -4.98 -0.03 0.62 16 13 C 0.45 10.90 7.59 -10.98 -0.08 10.81 16 14 O -0.58 -16.01 14.42 5.55 0.08 -15.93 16 15 N -0.57 -14.75 5.29 -10.96 -0.06 -14.81 16 16 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 17 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 18 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 19 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 20 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.03 0.46 6.05 -2.09 -0.01 0.45 16 25 H 0.05 0.40 6.30 -51.93 -0.33 0.07 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.49 6.23 -51.93 -0.32 0.16 16 28 H 0.07 0.57 6.58 -51.93 -0.34 0.23 16 29 H 0.08 0.72 6.34 -51.93 -0.33 0.39 16 30 H 0.04 0.28 5.92 -51.93 -0.31 -0.03 16 31 H 0.07 0.56 7.81 -51.93 -0.41 0.16 16 32 H 0.05 0.37 6.69 -51.93 -0.35 0.03 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.35 6.00 -51.93 -0.31 0.04 16 36 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 39 H 0.10 1.93 6.91 -51.93 -0.36 1.57 16 40 H 0.03 0.55 7.83 -51.93 -0.41 0.15 16 41 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 42 H 0.09 1.49 8.13 -51.92 -0.42 1.06 16 43 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.04 0.49 7.72 -51.93 -0.40 0.09 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -30.98 353.13 -9.10 -40.08 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.77 Total: 7.86 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.15 Total: 0.99 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -1.55 Total: -54.70 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.08 Total: -15.93 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.98 -9.10 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076004487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.001 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds