Wall clock time and date at job start Tue Mar 31 2020 02:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46983 * 2 1 4 4 C 1.46846 * 110.99642 * 66.28457 * 3 2 1 5 5 C 1.53035 * 109.52168 * 185.83924 * 4 3 2 6 6 C 1.53126 * 109.27749 * 300.81689 * 5 4 3 7 7 H 1.09000 * 109.52442 * 297.75497 * 6 5 4 8 8 N 1.46896 * 109.52102 * 177.55877 * 6 5 4 9 9 C 1.46910 * 110.99842 * 183.95486 * 8 6 5 10 10 C 1.46898 * 111.00089 * 60.00517 * 8 6 5 11 11 C 1.50701 * 109.47080 * 189.99713 * 10 8 6 12 12 O 1.21283 * 120.00218 * 359.97438 * 11 10 8 13 13 N 1.34781 * 120.00083 * 180.02562 * 11 10 8 14 14 C 1.37094 * 120.00202 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00066 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00064 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00042 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99932 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47182 * 90.00292 * 18 16 14 20 20 H 1.48500 * 109.47137 * 210.00231 * 18 16 14 21 21 H 1.48503 * 109.47392 * 330.00476 * 18 16 14 22 22 C 1.53119 * 109.15720 * 57.65348 * 6 5 4 23 23 C 1.46847 * 110.99671 * 190.48904 * 3 2 1 24 24 H 1.08999 * 109.46704 * 294.17949 * 23 3 2 25 25 C 1.53002 * 109.46006 * 54.15137 * 23 3 2 26 26 H 1.09009 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47063 * 299.99555 * 1 2 3 28 28 H 1.08999 * 109.47721 * 59.99452 * 1 2 3 29 29 H 1.09003 * 109.47063 * 240.00445 * 2 1 3 30 30 H 1.08997 * 109.46863 * 120.00249 * 2 1 3 31 31 H 1.09002 * 109.46412 * 305.85500 * 4 3 2 32 32 H 1.08998 * 109.46437 * 65.83020 * 4 3 2 33 33 H 1.08993 * 109.50654 * 60.76273 * 5 4 3 34 34 H 1.09002 * 109.50402 * 180.84469 * 5 4 3 35 35 H 1.09003 * 109.46747 * 60.00220 * 9 8 6 36 36 H 1.08999 * 109.46989 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.46964 * 299.99979 * 9 8 6 38 38 H 1.08991 * 109.47067 * 309.99817 * 10 8 6 39 39 H 1.09005 * 109.47041 * 69.99436 * 10 8 6 40 40 H 0.97009 * 119.99438 * 0.02562 * 13 11 10 41 41 H 0.96993 * 119.99712 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.50022 * 62.29201 * 22 6 5 43 43 H 1.08998 * 109.50575 * 182.35988 * 22 6 5 44 44 H 1.08993 * 109.47142 * 52.49677 * 25 23 3 45 45 H 1.09003 * 109.46619 * 172.49217 * 25 23 3 46 46 H 1.08995 * 109.47269 * 292.49065 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6751 2.0649 1.2552 5 6 2.0700 3.5405 1.1626 6 6 3.5748 3.6456 0.8998 7 1 4.1219 3.2081 1.7349 8 7 3.9498 5.0582 0.7518 9 6 5.3712 5.1921 0.4054 10 6 3.6306 5.8178 1.9679 11 6 3.7966 7.2912 1.6980 12 8 4.1468 7.6710 0.6007 13 7 3.5568 8.1867 2.6763 14 6 3.7074 9.5271 2.4306 15 1 4.0184 9.8653 1.4533 16 6 3.4597 10.4503 3.4390 17 7 3.6044 11.7351 3.2037 18 14 2.9209 9.8653 5.1293 19 1 4.1176 9.6327 5.9773 20 1 2.0607 10.8986 5.7598 21 1 2.1562 8.5995 4.9945 22 6 3.9143 2.8885 -0.3871 23 6 3.4660 1.4318 -0.2496 24 1 3.9935 0.9665 0.5831 25 6 3.7851 0.6761 -1.5411 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.6018 1.9863 1.4281 32 1 2.2111 1.5968 2.0808 33 1 1.5240 4.0128 0.3459 34 1 1.8279 4.0415 2.0998 35 1 5.5656 4.6784 -0.5361 36 1 5.6221 6.2478 0.3023 37 1 5.9804 4.7495 1.1934 38 1 2.6007 5.6162 2.2624 39 1 4.3035 5.5174 2.7711 40 1 3.2778 7.8828 3.5542 41 1 3.4312 12.3796 3.9075 42 1 3.3974 3.3506 -1.2283 43 1 4.9903 2.9242 -0.5573 44 1 3.1576 1.0545 -2.3480 45 1 4.8343 0.8223 -1.7977 46 1 3.5908 -0.3868 -1.3977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330873482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:57 Heat of formation + Delta-G solvation = -19.569767 kcal Electronic energy + Delta-G solvation = -23302.769665 eV Core-core repulsion = 20034.661030 eV Total energy + Delta-G solvation = -3268.108635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.95023 -38.51183 -36.58890 -33.96644 -33.20288 -32.48360 -31.63802 -29.53911 -28.36658 -26.74850 -25.64091 -24.12846 -22.70657 -21.93152 -20.43310 -19.70736 -19.27627 -18.19944 -16.60677 -15.89964 -15.58346 -15.39706 -15.00792 -14.68619 -14.40618 -14.32468 -14.05927 -13.77882 -13.51510 -13.05837 -12.90920 -12.53410 -12.38594 -12.26292 -12.14274 -12.07064 -11.92302 -11.85119 -11.42941 -11.36664 -11.14445 -11.07631 -10.97222 -10.78958 -10.57099 -10.44578 -10.10936 -9.94431 -9.50080 -8.51717 -8.45709 -8.14419 -7.87201 -6.28012 -3.79011 3.04698 3.08473 3.16683 3.64922 3.78862 3.93297 4.12929 4.58395 4.72509 4.74877 4.79712 4.96578 5.00188 5.11207 5.20554 5.24425 5.26298 5.31511 5.34984 5.44551 5.45732 5.54980 5.60838 5.65855 5.68549 5.74757 5.77935 5.86870 5.90233 5.93631 5.96655 5.99492 6.02491 6.08619 6.23666 6.39862 6.57473 6.96048 6.97792 7.26318 7.42391 7.62815 8.18610 8.64340 8.99115 9.46334 9.88363 10.85338 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.028019 B = 0.003497 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.083142 B = 8005.082711 C = 8671.380921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 N -0.532 5.532 4 C 0.057 3.943 5 C -0.114 4.114 6 C 0.085 3.915 7 H 0.031 0.969 8 N -0.512 5.512 9 C 0.020 3.980 10 C 0.039 3.961 11 C 0.455 3.545 12 O -0.558 6.558 13 N -0.593 5.593 14 C -0.303 4.303 15 H 0.120 0.880 16 C 0.041 3.959 17 N -0.883 5.883 18 Si 0.879 3.121 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.103 4.103 23 C 0.084 3.916 24 H 0.036 0.964 25 C -0.147 4.147 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.011 0.989 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.369 0.631 41 H 0.273 0.727 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 -24.921 -2.098 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 N -0.258 5.258 4 C -0.071 4.071 5 C -0.152 4.152 6 C -0.024 4.024 7 H 0.049 0.951 8 N -0.235 5.235 9 C -0.128 4.128 10 C -0.092 4.092 11 C 0.240 3.760 12 O -0.439 6.439 13 N -0.233 5.233 14 C -0.431 4.431 15 H 0.137 0.863 16 C -0.162 4.162 17 N -0.523 5.523 18 Si 0.705 3.295 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.195 1.195 22 C -0.141 4.141 23 C -0.025 4.025 24 H 0.054 0.946 25 C -0.204 4.204 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.030 0.970 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.202 0.798 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.087 -23.975 -3.541 24.431 hybrid contribution 0.416 -1.034 2.921 3.126 sum -2.670 -25.009 -0.620 25.159 Atomic orbital electron populations 1.21810 0.94958 1.01278 1.02641 1.22149 0.96060 0.89280 1.00739 1.62011 1.13849 1.15234 1.34683 1.22117 1.00879 0.94500 0.89606 1.21722 0.95542 0.95059 1.02831 1.21684 0.95736 0.88412 0.96547 0.95120 1.61618 1.20108 1.08087 1.33708 1.22580 0.86426 1.04775 0.99006 1.21962 1.01836 0.93949 0.91482 1.19661 0.84065 0.86577 0.85648 1.90521 1.49991 1.80073 1.23345 1.42223 1.62354 1.07154 1.11568 1.19427 1.43476 0.78950 1.01289 0.86281 1.25027 0.97820 0.95092 0.98256 1.69621 1.48508 1.00348 1.33864 0.86683 0.79293 0.78858 0.84627 1.19725 1.20197 1.19485 1.21715 1.00842 0.93056 0.98531 1.21588 0.87457 0.96335 0.97078 0.94628 1.21908 1.01737 0.99333 0.97443 0.92567 0.92680 0.91735 0.90297 0.95387 0.90258 0.95336 0.89732 0.91371 0.91728 0.88627 0.97002 0.89040 0.93671 0.79796 0.91671 0.89822 0.91373 0.91407 0.92064 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.85 37.16 0.37 -0.75 16 2 C 0.05 0.38 5.40 -3.82 -0.02 0.36 16 3 N -0.53 -5.38 4.49 -226.69 -1.02 -6.40 16 4 C 0.06 0.58 5.29 -3.84 -0.02 0.56 16 5 C -0.11 -1.38 5.09 -26.65 -0.14 -1.51 16 6 C 0.08 1.11 2.01 -67.59 -0.14 0.97 16 7 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 8 N -0.51 -8.45 4.37 -236.18 -1.03 -9.48 16 9 C 0.02 0.32 8.76 60.07 0.53 0.85 16 10 C 0.04 0.68 5.26 -4.98 -0.03 0.65 16 11 C 0.45 10.50 7.47 -10.98 -0.08 10.42 16 12 O -0.56 -15.03 13.91 5.55 0.08 -14.95 16 13 N -0.59 -14.33 5.09 -10.97 -0.06 -14.39 16 14 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 15 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 16 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 17 N -0.88 -26.04 13.96 55.50 0.77 -25.26 16 18 Si 0.88 19.55 27.73 -169.99 -4.71 14.84 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 22 C -0.10 -1.21 4.22 -26.65 -0.11 -1.32 16 23 C 0.08 0.84 2.44 -67.72 -0.17 0.67 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 C -0.15 -1.21 8.53 37.16 0.32 -0.90 16 26 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 27 H 0.05 0.42 6.44 -51.93 -0.33 0.09 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.60 5.80 -51.93 -0.30 0.30 16 30 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 31 H 0.08 0.75 6.23 -51.93 -0.32 0.42 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.80 6.34 -51.93 -0.33 0.47 16 35 H 0.06 0.92 6.30 -51.93 -0.33 0.59 16 36 H 0.10 1.89 5.82 -51.93 -0.30 1.59 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 1.42 5.88 -51.93 -0.31 1.12 16 39 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 40 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 46 H 0.05 0.39 6.56 -51.93 -0.34 0.05 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -31.77 345.27 -8.27 -40.03 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.76 Total: 8.16 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 0.26 Total: 2.24 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -1.33 Total: -55.53 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.95 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.77 -8.27 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330873482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.462 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds