Wall clock time and date at job start Tue Mar 31 2020 02:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47653 * 2 1 4 4 C 1.36932 * 120.00103 * 276.96302 * 3 2 1 5 5 H 1.08005 * 119.99957 * 321.27169 * 4 3 2 6 6 C 1.38811 * 120.00195 * 141.27093 * 4 3 2 7 7 N 1.31619 * 120.00001 * 355.57292 * 6 4 3 8 8 Si 1.86801 * 119.99981 * 175.57111 * 6 4 3 9 9 H 1.48496 * 109.47203 * 90.00058 * 8 6 4 10 10 H 1.48500 * 109.47099 * 210.00145 * 8 6 4 11 11 H 1.48504 * 109.47050 * 330.00088 * 8 6 4 12 12 C 1.46498 * 119.99812 * 96.95515 * 3 2 1 13 13 H 1.09002 * 109.47101 * 186.45123 * 12 3 2 14 14 C 1.52995 * 109.47415 * 306.44855 * 12 3 2 15 15 C 1.50695 * 109.47101 * 66.45073 * 12 3 2 16 16 O 1.21274 * 120.00240 * 335.42900 * 15 12 3 17 17 N 1.34786 * 120.00205 * 155.70132 * 15 12 3 18 18 C 1.47078 * 120.87742 * 4.27382 * 17 15 12 19 19 C 1.53695 * 108.27686 * 128.75719 * 18 17 15 20 20 N 1.46891 * 109.25913 * 54.07772 * 19 18 17 21 21 C 1.46901 * 111.00167 * 172.60855 * 20 19 18 22 22 C 1.53000 * 109.47250 * 314.30442 * 21 20 19 23 23 C 1.46898 * 111.27299 * 296.76038 * 20 19 18 24 24 C 1.47075 * 120.88037 * 184.55123 * 17 15 12 25 25 H 1.09003 * 109.47384 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46906 * 299.99746 * 1 2 3 27 27 H 1.09000 * 109.47519 * 59.99359 * 1 2 3 28 28 H 1.08998 * 109.47249 * 240.00039 * 2 1 3 29 29 H 1.09008 * 109.47584 * 120.00346 * 2 1 3 30 30 H 0.97000 * 120.00005 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.47498 * 176.01404 * 14 12 3 32 32 H 1.09000 * 109.47885 * 296.01709 * 14 12 3 33 33 H 1.09006 * 109.47209 * 56.02182 * 14 12 3 34 34 H 1.09005 * 109.62969 * 248.52437 * 18 17 15 35 35 H 1.09003 * 109.63035 * 9.10292 * 18 17 15 36 36 H 1.09000 * 109.64701 * 294.07763 * 19 18 17 37 37 H 1.09001 * 109.41954 * 173.94795 * 19 18 17 38 38 H 1.08997 * 109.47149 * 74.30644 * 21 20 19 39 39 H 1.09006 * 109.47015 * 194.30355 * 21 20 19 40 40 H 1.09007 * 109.47214 * 300.00058 * 22 21 20 41 41 H 1.09000 * 109.46794 * 59.99961 * 22 21 20 42 42 H 1.09000 * 109.46983 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.49304 * 303.14551 * 23 20 19 44 44 H 1.09000 * 109.49944 * 183.06290 * 23 20 19 45 45 H 1.08996 * 109.63374 * 350.89399 * 24 17 15 46 46 H 1.08999 * 109.62468 * 111.47875 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1111 2.0746 -1.1771 5 1 2.4429 1.5734 -2.0744 6 6 1.7787 3.4217 -1.2172 7 7 1.2918 4.0115 -0.1460 8 14 2.0224 4.3975 -2.7913 9 1 0.7893 4.3237 -3.6154 10 1 2.3093 5.8153 -2.4554 11 1 3.1626 3.8291 -3.5545 12 6 2.4074 2.0205 1.2594 13 1 2.6324 3.0716 1.0789 14 6 1.2585 1.9101 2.2637 15 6 3.6282 1.3337 1.8152 16 8 3.8679 0.1841 1.5124 17 7 4.4508 1.9952 2.6534 18 6 4.1270 3.3547 3.1119 19 6 4.2316 3.3839 4.6450 20 7 5.5548 2.8911 5.0499 21 6 5.7626 3.0657 6.4936 22 6 5.3180 4.4702 6.9067 23 6 5.7444 1.4885 4.6566 24 6 5.6988 1.3792 3.1287 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.0591 4.9528 -0.1741 31 1 1.5730 2.3224 3.2225 32 1 0.3976 2.4668 1.8936 33 1 0.9863 0.8622 2.3907 34 1 4.8325 4.0646 2.6802 35 1 3.1123 3.6118 2.8079 36 1 3.4588 2.7481 5.0773 37 1 4.1008 4.4069 4.9978 38 1 5.1767 2.3246 7.0372 39 1 6.8194 2.9357 6.7269 40 1 5.9040 5.2114 6.3630 41 1 4.2613 4.6001 6.6733 42 1 5.4726 4.5999 7.9778 43 1 4.9506 0.8791 5.0886 44 1 6.7108 1.1368 5.0177 45 1 5.7238 0.3296 2.8358 46 1 6.5525 1.9028 2.6986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331331630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:23 Heat of formation + Delta-G solvation = -18.901541 kcal Electronic energy + Delta-G solvation = -24450.366532 eV Core-core repulsion = 21182.286873 eV Total energy + Delta-G solvation = -3268.079658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24086 -39.34402 -37.51068 -35.92280 -33.80280 -33.13506 -31.70283 -31.27950 -30.13164 -27.77201 -26.08997 -24.92569 -24.53331 -23.13466 -22.25440 -21.49483 -19.84960 -18.69542 -18.11300 -16.96041 -16.45799 -16.33037 -16.13790 -16.08752 -15.75198 -15.64621 -15.31536 -14.81292 -14.75461 -14.16632 -13.99273 -13.49042 -13.38908 -13.21760 -13.07382 -12.98847 -12.89910 -12.77725 -12.73433 -12.44521 -12.30517 -12.17305 -12.14286 -12.09848 -11.99189 -11.63954 -11.60285 -11.38770 -10.59711 -10.38590 -9.69633 -9.22440 -8.47375 -7.85881 -5.47380 1.47606 1.49862 1.58290 1.84649 2.13310 2.52297 2.91194 3.28638 3.65425 3.79845 3.96308 3.98342 4.15064 4.23962 4.28963 4.41112 4.48155 4.50784 4.56429 4.61114 4.63665 4.72916 4.73660 4.80272 4.82148 4.89160 4.92009 4.96019 5.05301 5.05861 5.10536 5.17737 5.32505 5.35100 5.44587 5.56245 5.61397 5.70281 5.71959 6.03136 6.08472 6.48085 6.55087 7.16254 7.41635 7.83187 8.38602 9.16088 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.018982 B = 0.005338 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.695845 B = 5243.755456 C = 5865.352766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 N -0.582 5.582 4 C -0.277 4.277 5 H 0.045 0.955 6 C -0.021 4.021 7 N -0.910 5.910 8 Si 0.962 3.038 9 H -0.284 1.284 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.168 3.832 13 H 0.114 0.886 14 C -0.122 4.122 15 C 0.492 3.508 16 O -0.585 6.585 17 N -0.620 5.620 18 C 0.110 3.890 19 C 0.045 3.955 20 N -0.545 5.545 21 C 0.051 3.949 22 C -0.154 4.154 23 C 0.055 3.945 24 C 0.111 3.889 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.258 0.742 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.113 0.887 38 H 0.031 0.969 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 1.584 14.698 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 N -0.303 5.303 4 C -0.407 4.407 5 H 0.063 0.937 6 C -0.219 4.219 7 N -0.553 5.553 8 Si 0.790 3.210 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.057 3.943 13 H 0.131 0.869 14 C -0.181 4.181 15 C 0.280 3.720 16 O -0.465 6.465 17 N -0.355 5.355 18 C -0.013 4.013 19 C -0.083 4.083 20 N -0.270 5.270 21 C -0.076 4.076 22 C -0.212 4.212 23 C -0.073 4.073 24 C -0.011 4.011 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.131 0.869 38 H 0.050 0.950 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.124 0.876 45 H 0.092 0.908 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.789 1.413 14.303 15.896 hybrid contribution -0.516 -0.119 -0.744 0.913 sum 6.273 1.294 13.560 14.996 Atomic orbital electron populations 1.22200 0.98046 0.99988 1.00734 1.20830 0.92562 0.85998 0.98432 1.43707 1.72865 1.10873 1.02819 1.19244 1.39347 0.93524 0.88596 0.93691 1.25842 0.97458 0.98809 0.99762 1.69894 1.45685 1.11266 1.28477 0.85392 0.77675 0.77910 0.80062 1.21023 1.20791 1.20749 1.20413 0.88868 0.98808 0.86212 0.86913 1.21871 0.98968 0.99999 0.97262 1.23136 0.85956 0.86414 0.76450 1.90479 1.75892 1.19480 1.60685 1.48503 1.22352 1.17361 1.47237 1.22053 1.02224 0.82435 0.94568 1.22648 0.89531 1.02290 0.93871 1.62041 1.29409 1.18913 1.16685 1.22166 1.01921 0.97830 0.85706 1.21934 1.01556 0.95673 1.02011 1.22363 1.02111 0.88755 0.94121 1.21661 0.86264 0.98897 0.94326 0.92089 0.93624 0.94771 0.95975 0.93306 0.93279 0.92264 0.92191 0.94458 0.91017 0.89298 0.95013 0.86894 0.95020 0.89586 0.91859 0.92340 0.90672 0.95488 0.87602 0.90781 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.33 9.97 71.98 0.72 -5.61 16 2 C 0.15 7.04 5.00 86.38 0.43 7.47 16 3 N -0.58 -30.47 2.26 -682.24 -1.54 -32.01 16 4 C -0.28 -15.53 9.52 84.03 0.80 -14.73 16 5 H 0.05 2.61 7.83 -2.91 -0.02 2.59 16 6 C -0.02 -1.12 5.16 84.86 0.44 -0.68 16 7 N -0.91 -48.34 10.76 21.65 0.23 -48.11 16 8 Si 0.96 43.66 29.56 68.60 2.03 45.69 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 C 0.17 7.89 1.33 44.24 0.06 7.94 16 13 H 0.11 5.71 4.37 -2.39 -0.01 5.70 16 14 C -0.12 -5.07 7.83 71.98 0.56 -4.51 16 15 C 0.49 22.10 6.87 87.65 0.60 22.70 16 16 O -0.59 -29.56 13.91 -3.01 -0.04 -29.61 16 17 N -0.62 -22.42 3.00 -817.05 -2.45 -24.87 16 18 C 0.11 3.35 6.11 86.50 0.53 3.88 16 19 C 0.05 1.06 5.06 86.54 0.44 1.50 16 20 N -0.54 -12.02 4.78 -894.33 -4.27 -16.30 16 21 C 0.05 0.84 5.99 86.30 0.52 1.36 16 22 C -0.15 -2.14 9.16 71.98 0.66 -1.48 16 23 C 0.06 1.30 5.58 86.39 0.48 1.79 16 24 C 0.11 3.41 6.61 86.35 0.57 3.98 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.04 1.91 6.25 -2.38 -0.01 1.89 16 27 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.02 1.07 8.10 -2.39 -0.02 1.06 16 29 H 0.05 2.35 6.02 -2.38 -0.01 2.33 16 30 H 0.26 13.12 8.31 -92.71 -0.77 12.35 16 31 H 0.06 2.09 7.07 -2.38 -0.02 2.08 16 32 H 0.06 2.70 7.92 -2.39 -0.02 2.68 16 33 H 0.04 1.53 6.33 -2.38 -0.02 1.51 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.09 2.96 4.88 -2.39 -0.01 2.95 16 36 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 2.19 5.73 -2.39 -0.01 2.18 16 38 H 0.03 0.53 8.08 -2.39 -0.02 0.51 16 39 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.06 0.84 6.18 -2.39 -0.01 0.82 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.11 1.97 8.11 -2.39 -0.02 1.95 16 45 H 0.07 2.51 7.04 -2.39 -0.02 2.50 16 46 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -63.92 345.27 1.70 -62.22 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.95 Total: 19.37 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.81 Total: 23.62 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -8.04 Total: -121.29 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.04 Total: -29.61 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -63.92 1.70 -62.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331331630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.315 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds