Wall clock time and date at job start Tue Mar 31 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99959 * 2 1 4 4 C 1.50700 * 109.47123 * 293.95367 * 3 2 1 5 5 O 1.21293 * 119.99936 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00215 * 179.97438 * 4 3 2 7 7 C 1.37099 * 120.00238 * 179.97438 * 6 4 3 8 8 H 1.08005 * 120.00047 * 0.02562 * 7 6 4 9 9 C 1.38950 * 120.00227 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99943 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00055 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46825 * 90.00193 * 11 9 7 13 13 H 1.48497 * 109.47133 * 209.99876 * 11 9 7 14 14 H 1.48498 * 109.46946 * 330.00590 * 11 9 7 15 15 C 1.46896 * 111.00109 * 123.94849 * 2 1 3 16 16 C 1.53006 * 109.47328 * 176.04370 * 15 2 1 17 17 C 1.53000 * 109.47395 * 296.04997 * 15 2 1 18 18 C 1.53005 * 109.47094 * 56.05175 * 15 2 1 19 19 N 1.46907 * 109.46963 * 39.37353 * 18 15 2 20 20 C 1.48527 * 110.99683 * 59.16626 * 19 18 15 21 21 C 1.54931 * 103.22647 * 159.72116 * 20 19 18 22 22 C 1.54600 * 102.92059 * 322.58151 * 21 20 19 23 23 C 1.47900 * 110.99508 * 176.55902 * 19 18 15 24 24 H 1.09003 * 109.47136 * 60.00069 * 1 2 3 25 25 H 1.09003 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47239 * 300.00023 * 1 2 3 27 27 H 1.09005 * 109.47488 * 53.95298 * 3 2 1 28 28 H 1.09001 * 109.47249 * 173.95598 * 3 2 1 29 29 H 0.97001 * 120.00158 * 0.02562 * 6 4 3 30 30 H 0.96999 * 119.99761 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.46287 * 69.91055 * 16 15 2 32 32 H 1.08997 * 109.47184 * 189.90775 * 16 15 2 33 33 H 1.08997 * 109.47285 * 309.91296 * 16 15 2 34 34 H 1.08995 * 109.47051 * 60.00219 * 17 15 2 35 35 H 1.09004 * 109.46657 * 179.97438 * 17 15 2 36 36 H 1.08998 * 109.47106 * 299.99442 * 17 15 2 37 37 H 1.08990 * 109.47476 * 159.38035 * 18 15 2 38 38 H 1.09007 * 109.46780 * 279.37942 * 18 15 2 39 39 H 1.09008 * 110.66642 * 278.15450 * 20 19 18 40 40 H 1.08998 * 110.67080 * 41.28193 * 20 19 18 41 41 H 1.09004 * 110.72625 * 204.22376 * 21 20 19 42 42 H 1.08996 * 110.73054 * 80.94043 * 21 20 19 43 43 H 1.09003 * 110.30556 * 263.04463 * 22 21 20 44 44 H 1.08999 * 110.39114 * 140.91717 * 22 21 20 45 45 H 1.08995 * 109.92097 * 333.50749 * 23 19 18 46 46 H 1.09000 * 109.91885 * 94.60718 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0046 1.4456 -2.1408 6 7 2.0179 3.3202 -1.5233 7 6 1.6922 3.9347 -2.7048 8 1 1.1299 3.3988 -3.4552 9 6 2.0855 5.2470 -2.9369 10 7 2.7701 5.8990 -2.0241 11 14 1.6411 6.0845 -4.5464 12 1 0.3288 6.7650 -4.4044 13 1 2.6834 7.0857 -4.8878 14 1 1.5576 5.0687 -5.6264 15 6 1.9954 -0.7658 1.1376 16 6 3.5217 -0.8263 1.0492 17 6 1.5868 -0.0835 2.4447 18 6 1.4261 -2.1856 1.1038 19 7 1.3766 -2.6604 -0.2856 20 6 2.7299 -2.6575 -0.8976 21 6 2.5826 -3.6378 -2.0882 22 6 1.6495 -4.7323 -1.5214 23 6 0.9077 -4.0616 -0.3504 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3444 0.1082 29 1 2.5233 3.8014 -0.8496 30 1 3.0450 6.8150 -2.1863 31 1 3.9365 0.1617 1.2490 32 1 3.9005 -1.5351 1.7856 33 1 3.8153 -1.1485 0.0502 34 1 0.4995 -0.0406 2.5077 35 1 1.9772 -0.6522 3.2888 36 1 1.9925 0.9279 2.4688 37 1 2.0633 -2.8467 1.6912 38 1 0.4200 -2.1837 1.5232 39 1 2.9903 -1.6596 -1.2507 40 1 3.4734 -3.0219 -0.1888 41 1 3.5496 -4.0595 -2.3626 42 1 2.1209 -3.1415 -2.9418 43 1 2.2342 -5.5796 -1.1632 44 1 0.9398 -5.0577 -2.2821 45 1 1.1433 -4.5755 0.5815 46 1 -0.1678 -4.0855 -0.5257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419370583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:54 Heat of formation + Delta-G solvation = -7.087676 kcal Electronic energy + Delta-G solvation = -24081.391708 eV Core-core repulsion = 20813.824337 eV Total energy + Delta-G solvation = -3267.567371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92379 -38.23508 -36.95872 -33.87643 -32.47105 -31.13408 -30.87696 -29.05723 -28.13141 -26.75703 -25.33916 -24.68443 -23.41008 -20.93187 -20.68862 -19.28184 -18.41393 -17.65495 -16.62541 -16.04586 -15.53115 -14.90875 -14.63446 -14.57666 -14.16372 -13.82034 -13.63669 -13.56065 -13.30590 -13.15906 -12.51252 -12.38129 -12.16556 -12.06797 -11.89170 -11.72431 -11.46375 -11.35087 -11.24556 -11.11941 -10.92078 -10.87681 -10.64707 -10.48825 -10.37305 -10.33156 -10.22895 -10.12204 -9.37649 -8.26210 -8.11303 -7.86213 -7.52911 -6.33312 -3.73347 3.23164 3.31051 3.37371 3.96762 4.04063 4.22270 4.43510 4.66405 4.78207 4.95514 4.96308 5.02237 5.24718 5.29528 5.34988 5.36592 5.50588 5.56571 5.61600 5.63307 5.71184 5.73904 5.82806 5.86301 5.92001 5.95930 5.96386 6.04158 6.11338 6.13964 6.23708 6.26589 6.31451 6.37695 6.44952 6.51696 6.88018 7.12722 7.19944 7.59990 7.63076 7.73568 8.16999 8.72972 9.28178 9.65819 10.19122 10.84868 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.004219 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.239567 B = 6635.473099 C = 7261.701817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.482 5.482 3 C 0.038 3.962 4 C 0.448 3.552 5 O -0.572 6.572 6 N -0.570 5.570 7 C -0.294 4.294 8 H 0.102 0.898 9 C 0.020 3.980 10 N -0.905 5.905 11 Si 0.928 3.072 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.105 3.895 16 C -0.160 4.160 17 C -0.181 4.181 18 C 0.063 3.937 19 N -0.487 5.487 20 C 0.040 3.960 21 C -0.127 4.127 22 C -0.129 4.129 23 C 0.032 3.968 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.390 0.610 30 H 0.270 0.730 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 -16.531 8.675 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.205 5.205 3 C -0.093 4.093 4 C 0.233 3.767 5 O -0.455 6.455 6 N -0.207 5.207 7 C -0.424 4.424 8 H 0.120 0.880 9 C -0.181 4.181 10 N -0.547 5.547 11 Si 0.755 3.245 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.195 1.195 15 C 0.015 3.985 16 C -0.217 4.217 17 C -0.241 4.241 18 C -0.066 4.066 19 N -0.211 5.211 20 C -0.087 4.087 21 C -0.165 4.165 22 C -0.167 4.167 23 C -0.096 4.096 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.223 0.777 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.174 -16.633 7.381 18.198 hybrid contribution 0.400 0.742 1.084 1.373 sum 0.574 -15.891 8.466 18.015 Atomic orbital electron populations 1.22511 0.86817 1.02013 1.00689 1.61798 1.08643 1.11120 1.38952 1.21980 1.00709 0.89904 0.96711 1.19807 0.85086 0.82774 0.89003 1.90493 1.43406 1.64546 1.47072 1.41874 1.49922 1.10896 1.18020 1.19683 1.32594 0.95381 0.94743 0.88018 1.25223 0.97027 0.96684 0.99117 1.69617 1.38481 1.12147 1.34465 0.85890 0.77933 0.78908 0.81746 1.20545 1.21038 1.19457 1.21101 0.95043 0.93109 0.89258 1.22395 0.94156 1.01782 1.03350 1.22501 1.01922 1.01439 0.98215 1.22338 1.00128 0.94416 0.89672 1.64763 1.22757 1.17779 1.15782 1.23502 0.89469 1.00980 0.94731 1.22527 0.98872 0.96063 0.99039 1.22360 0.98644 0.97897 0.97817 1.22895 1.00418 0.89256 0.97037 0.89226 0.91046 0.97761 0.93880 0.89608 0.77670 0.92050 0.92478 0.92963 0.89974 0.92253 0.92585 0.91954 0.94899 0.91133 0.87751 0.94714 0.91707 0.90441 0.92200 0.91359 0.94709 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 8.32 60.06 0.50 0.97 16 2 N -0.48 -8.04 3.08 -228.59 -0.70 -8.74 16 3 C 0.04 0.70 4.55 -4.97 -0.02 0.68 16 4 C 0.45 10.72 7.51 -10.99 -0.08 10.64 16 5 O -0.57 -15.55 13.88 5.55 0.08 -15.47 16 6 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 7 C -0.29 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 10 N -0.91 -25.03 13.05 55.50 0.72 -24.30 16 11 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.11 1.38 0.30 -131.60 -0.04 1.34 16 16 C -0.16 -1.93 6.98 37.16 0.26 -1.67 16 17 C -0.18 -2.15 7.67 37.16 0.29 -1.87 16 18 C 0.06 0.77 3.33 -3.82 -0.01 0.75 16 19 N -0.49 -6.42 3.85 -230.45 -0.89 -7.31 16 20 C 0.04 0.52 4.31 -1.90 -0.01 0.51 16 21 C -0.13 -1.48 7.06 -24.87 -0.18 -1.66 16 22 C -0.13 -1.32 6.93 -25.37 -0.18 -1.49 16 23 C 0.03 0.36 6.70 -2.76 -0.02 0.34 16 24 H 0.09 1.89 5.88 -51.93 -0.31 1.59 16 25 H 0.07 1.15 5.92 -51.93 -0.31 0.84 16 26 H 0.00 0.07 6.61 -51.93 -0.34 -0.28 16 27 H 0.04 0.75 6.86 -51.93 -0.36 0.40 16 28 H 0.09 1.45 6.05 -51.93 -0.31 1.14 16 29 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.06 0.70 6.72 -51.93 -0.35 0.35 16 32 H 0.05 0.54 7.91 -51.93 -0.41 0.13 16 33 H 0.08 1.07 4.40 -51.93 -0.23 0.84 16 34 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.77 6.64 -51.93 -0.34 0.43 16 37 H 0.03 0.36 7.66 -51.93 -0.40 -0.03 16 38 H 0.07 0.84 7.33 -51.92 -0.38 0.46 16 39 H 0.10 1.63 5.98 -51.92 -0.31 1.32 16 40 H 0.03 0.41 7.11 -51.93 -0.37 0.04 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.35 7.68 -51.93 -0.40 -0.05 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 340.38 15.07 5.13 5.13 Total: -1.00 -30.33 340.38 -8.00 -38.33 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.53 Total: 10.18 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 0.27 Total: 0.54 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.92 Total: -55.09 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.08 Total: -15.47 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.33 -8.00 -38.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419370583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.241 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds