Wall clock time and date at job start Tue Mar 31 2020 02:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99959 * 2 1 4 4 C 1.50700 * 109.47123 * 293.95367 * 3 2 1 5 5 O 1.21293 * 119.99936 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00215 * 179.97438 * 4 3 2 7 7 C 1.37099 * 120.00238 * 179.97438 * 6 4 3 8 8 H 1.08005 * 120.00047 * 0.02562 * 7 6 4 9 9 C 1.38950 * 120.00227 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99943 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00055 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46825 * 90.00193 * 11 9 7 13 13 H 1.48497 * 109.47133 * 209.99876 * 11 9 7 14 14 H 1.48498 * 109.46946 * 330.00590 * 11 9 7 15 15 C 1.46896 * 111.00109 * 123.94849 * 2 1 3 16 16 C 1.53006 * 109.47328 * 176.04370 * 15 2 1 17 17 C 1.53000 * 109.47395 * 296.04997 * 15 2 1 18 18 C 1.53005 * 109.47094 * 56.05175 * 15 2 1 19 19 N 1.46907 * 109.46963 * 39.37353 * 18 15 2 20 20 C 1.48527 * 110.99683 * 59.16626 * 19 18 15 21 21 C 1.54931 * 103.22647 * 159.72116 * 20 19 18 22 22 C 1.54600 * 102.92059 * 322.58151 * 21 20 19 23 23 C 1.47900 * 110.99508 * 176.55902 * 19 18 15 24 24 H 1.09003 * 109.47136 * 60.00069 * 1 2 3 25 25 H 1.09003 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47239 * 300.00023 * 1 2 3 27 27 H 1.09005 * 109.47488 * 53.95298 * 3 2 1 28 28 H 1.09001 * 109.47249 * 173.95598 * 3 2 1 29 29 H 0.97001 * 120.00158 * 0.02562 * 6 4 3 30 30 H 0.96999 * 119.99761 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.46287 * 69.91055 * 16 15 2 32 32 H 1.08997 * 109.47184 * 189.90775 * 16 15 2 33 33 H 1.08997 * 109.47285 * 309.91296 * 16 15 2 34 34 H 1.08995 * 109.47051 * 60.00219 * 17 15 2 35 35 H 1.09004 * 109.46657 * 179.97438 * 17 15 2 36 36 H 1.08998 * 109.47106 * 299.99442 * 17 15 2 37 37 H 1.08990 * 109.47476 * 159.38035 * 18 15 2 38 38 H 1.09007 * 109.46780 * 279.37942 * 18 15 2 39 39 H 1.09008 * 110.66642 * 278.15450 * 20 19 18 40 40 H 1.08998 * 110.67080 * 41.28193 * 20 19 18 41 41 H 1.09004 * 110.72625 * 204.22376 * 21 20 19 42 42 H 1.08996 * 110.73054 * 80.94043 * 21 20 19 43 43 H 1.09003 * 110.30556 * 263.04463 * 22 21 20 44 44 H 1.08999 * 110.39114 * 140.91717 * 22 21 20 45 45 H 1.08995 * 109.92097 * 333.50749 * 23 19 18 46 46 H 1.09000 * 109.91885 * 94.60718 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0046 1.4456 -2.1408 6 7 2.0179 3.3202 -1.5233 7 6 1.6922 3.9347 -2.7048 8 1 1.1299 3.3988 -3.4552 9 6 2.0855 5.2470 -2.9369 10 7 2.7701 5.8990 -2.0241 11 14 1.6411 6.0845 -4.5464 12 1 0.3288 6.7650 -4.4044 13 1 2.6834 7.0857 -4.8878 14 1 1.5576 5.0687 -5.6264 15 6 1.9954 -0.7658 1.1376 16 6 3.5217 -0.8263 1.0492 17 6 1.5868 -0.0835 2.4447 18 6 1.4261 -2.1856 1.1038 19 7 1.3766 -2.6604 -0.2856 20 6 2.7299 -2.6575 -0.8976 21 6 2.5826 -3.6378 -2.0882 22 6 1.6495 -4.7323 -1.5214 23 6 0.9077 -4.0616 -0.3504 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3444 0.1082 29 1 2.5233 3.8014 -0.8496 30 1 3.0450 6.8150 -2.1863 31 1 3.9365 0.1617 1.2490 32 1 3.9005 -1.5351 1.7856 33 1 3.8153 -1.1485 0.0502 34 1 0.4995 -0.0406 2.5077 35 1 1.9772 -0.6522 3.2888 36 1 1.9925 0.9279 2.4688 37 1 2.0633 -2.8467 1.6912 38 1 0.4200 -2.1837 1.5232 39 1 2.9903 -1.6596 -1.2507 40 1 3.4734 -3.0219 -0.1888 41 1 3.5496 -4.0595 -2.3626 42 1 2.1209 -3.1415 -2.9418 43 1 2.2342 -5.5796 -1.1632 44 1 0.9398 -5.0577 -2.2821 45 1 1.1433 -4.5755 0.5815 46 1 -0.1678 -4.0855 -0.5257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419370583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:53 Heat of formation + Delta-G solvation = -27.869766 kcal Electronic energy + Delta-G solvation = -24082.292887 eV Core-core repulsion = 20813.824337 eV Total energy + Delta-G solvation = -3268.468550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10084 -39.83630 -38.26299 -35.90423 -33.69832 -33.20102 -31.89216 -30.04888 -29.49039 -27.88949 -26.76689 -26.05227 -24.92977 -21.93402 -21.55183 -21.02977 -19.98636 -19.39998 -18.00376 -17.26091 -16.74537 -16.46682 -16.13664 -16.06838 -15.73646 -15.18862 -14.94766 -14.77937 -14.55001 -14.30834 -13.89695 -13.52925 -13.48667 -13.39839 -13.03435 -12.98259 -12.88117 -12.81263 -12.48201 -12.38895 -12.18011 -12.12822 -12.10755 -12.08151 -11.81057 -11.41577 -11.38785 -11.33022 -11.26216 -10.17203 -9.94480 -9.05057 -8.88426 -8.42597 -5.90545 1.39214 1.42012 1.55083 2.12958 2.31111 2.81818 3.24267 3.25603 3.57068 3.73230 3.88650 4.01087 4.03639 4.17102 4.30417 4.34162 4.41019 4.44966 4.58092 4.61146 4.67571 4.69504 4.73236 4.77442 4.83123 4.84630 4.96635 5.02725 5.04575 5.05345 5.05967 5.20613 5.26287 5.32195 5.39738 5.41093 5.45580 5.50901 5.98753 6.19357 6.21534 6.30901 6.55293 6.67206 7.18660 7.63037 8.20444 8.75151 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.004219 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.239567 B = 6635.473099 C = 7261.701817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.494 5.494 3 C 0.054 3.946 4 C 0.445 3.555 5 O -0.608 6.608 6 N -0.579 5.579 7 C -0.328 4.328 8 H 0.077 0.923 9 C -0.014 4.014 10 N -0.924 5.924 11 Si 0.991 3.009 12 H -0.272 1.272 13 H -0.271 1.271 14 H -0.274 1.274 15 C 0.104 3.896 16 C -0.158 4.158 17 C -0.177 4.177 18 C 0.066 3.934 19 N -0.514 5.514 20 C 0.045 3.955 21 C -0.129 4.129 22 C -0.123 4.123 23 C 0.032 3.968 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.394 0.606 30 H 0.276 0.724 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -17.622 10.123 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.218 5.218 3 C -0.077 4.077 4 C 0.232 3.768 5 O -0.494 6.494 6 N -0.217 5.217 7 C -0.458 4.458 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.565 5.565 11 Si 0.815 3.185 12 H -0.197 1.197 13 H -0.195 1.195 14 H -0.199 1.199 15 C 0.015 3.985 16 C -0.215 4.215 17 C -0.236 4.236 18 C -0.062 4.062 19 N -0.238 5.238 20 C -0.082 4.082 21 C -0.167 4.167 22 C -0.161 4.161 23 C -0.095 4.095 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.227 0.773 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.834 -17.730 8.860 19.838 hybrid contribution 0.194 1.024 0.654 1.230 sum 1.028 -16.706 9.514 19.253 Atomic orbital electron populations 1.22285 0.87501 1.02096 0.98961 1.61727 1.08148 1.10158 1.41748 1.21797 1.01781 0.90712 0.93427 1.20828 0.83441 0.82082 0.90450 1.90474 1.44674 1.65254 1.48972 1.41945 1.50500 1.11680 1.17600 1.19630 1.34126 0.96363 0.95650 0.90513 1.25992 0.96417 0.96614 1.02299 1.69679 1.38465 1.12580 1.35776 0.84958 0.78189 0.77795 0.77568 1.19738 1.19544 1.19864 1.21247 0.95643 0.93265 0.88383 1.22384 0.93316 1.02321 1.03502 1.22449 1.01721 1.01266 0.98174 1.22336 1.00634 0.93799 0.89454 1.64688 1.23007 1.19435 1.16656 1.23352 0.89925 0.99498 0.95424 1.22510 0.99939 0.96380 0.97848 1.22345 0.98435 0.97783 0.97550 1.22912 1.00227 0.88300 0.98096 0.93678 0.89976 0.96611 0.92504 0.87908 0.77290 0.91455 0.92751 0.90489 0.91097 0.92625 0.90155 0.92599 0.92899 0.90885 0.91010 0.93061 0.90122 0.93072 0.90166 0.91200 0.93049 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 8.32 127.69 1.06 2.44 16 2 N -0.49 -16.34 3.08 -877.12 -2.70 -19.04 16 3 C 0.05 1.98 4.55 85.56 0.39 2.37 16 4 C 0.44 21.97 7.51 87.66 0.66 22.62 16 5 O -0.61 -34.66 13.88 -3.07 -0.04 -34.70 16 6 N -0.58 -30.74 5.29 -306.98 -1.62 -32.36 16 7 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 10 N -0.92 -50.98 13.05 21.66 0.28 -50.70 16 11 Si 0.99 44.04 29.55 68.60 2.03 46.07 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 C 0.10 2.52 0.30 3.53 0.00 2.52 16 16 C -0.16 -3.47 6.98 71.98 0.50 -2.97 16 17 C -0.18 -3.72 7.67 71.98 0.55 -3.16 16 18 C 0.07 1.44 3.33 86.30 0.29 1.72 16 19 N -0.51 -12.86 3.85 -883.02 -3.40 -16.26 16 20 C 0.05 1.13 4.31 86.65 0.37 1.50 16 21 C -0.13 -2.92 7.06 31.80 0.22 -2.70 16 22 C -0.12 -2.28 6.93 31.47 0.22 -2.06 16 23 C 0.03 0.65 6.70 86.45 0.58 1.23 16 24 H 0.04 1.98 5.88 -2.39 -0.01 1.97 16 25 H 0.08 2.63 5.92 -2.39 -0.01 2.62 16 26 H 0.02 0.50 6.61 -2.39 -0.02 0.48 16 27 H 0.06 1.94 6.86 -2.38 -0.02 1.92 16 28 H 0.10 3.42 6.05 -2.39 -0.01 3.41 16 29 H 0.39 19.95 7.90 -92.71 -0.73 19.22 16 30 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.05 1.21 6.72 -2.39 -0.02 1.20 16 32 H 0.08 1.31 7.91 -2.39 -0.02 1.29 16 33 H 0.07 1.75 4.40 -2.39 -0.01 1.74 16 34 H 0.05 1.21 6.57 -2.39 -0.02 1.20 16 35 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.05 1.25 6.64 -2.39 -0.02 1.23 16 37 H 0.05 0.95 7.66 -2.39 -0.02 0.94 16 38 H 0.07 1.54 7.33 -2.38 -0.02 1.53 16 39 H 0.07 2.27 5.98 -2.38 -0.01 2.26 16 40 H 0.05 1.09 7.11 -2.39 -0.02 1.07 16 41 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 45 H 0.05 0.87 7.68 -2.39 -0.02 0.85 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -67.02 340.38 0.92 -66.10 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 0.24 Total: 35.99 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 6.13 Total: 4.90 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -7.44 Total: -118.35 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.04 Total: -34.70 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.02 0.92 -66.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419370583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.232 kcal (2) G-P(sol) polarization free energy of solvation -67.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds