Wall clock time and date at job start Tue Mar 31 2020 02:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47232 * 2 1 4 4 N 1.46898 * 109.47432 * 239.99146 * 2 1 3 5 5 C 1.53004 * 109.46653 * 119.99093 * 2 1 3 6 6 H 1.09001 * 109.58516 * 68.97161 * 5 2 1 7 7 C 1.53185 * 109.59135 * 308.68541 * 5 2 1 8 8 C 1.53073 * 109.29653 * 185.71972 * 7 5 2 9 9 C 1.53045 * 109.65691 * 61.15423 * 8 7 5 10 10 C 1.53185 * 109.31124 * 298.69755 * 9 8 7 11 11 N 1.46925 * 108.77714 * 54.63783 * 10 9 8 12 12 C 1.34776 * 120.63405 * 126.41132 * 11 10 9 13 13 O 1.21278 * 120.00207 * 185.83644 * 12 11 10 14 14 C 1.50701 * 119.99582 * 5.83028 * 12 11 10 15 15 H 1.08999 * 109.47415 * 40.00512 * 14 12 11 16 16 N 1.46905 * 109.46686 * 160.00199 * 14 12 11 17 17 C 1.52994 * 109.47200 * 279.99877 * 14 12 11 18 18 C 1.53008 * 109.47040 * 175.00181 * 17 14 12 19 19 C 1.50698 * 109.46764 * 180.02562 * 18 17 14 20 20 H 1.08000 * 120.00963 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99587 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00347 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47267 * 59.99827 * 23 21 19 25 25 H 1.48501 * 109.47272 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47251 * 299.99615 * 23 21 19 27 27 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47525 * 300.00820 * 1 2 3 29 29 H 1.09001 * 109.46956 * 60.00674 * 1 2 3 30 30 H 1.00901 * 110.99694 * 300.00611 * 4 2 1 31 31 H 1.00900 * 111.00028 * 63.95333 * 4 2 1 32 32 H 1.09001 * 109.49813 * 305.52984 * 7 5 2 33 33 H 1.09002 * 109.49692 * 65.62893 * 7 5 2 34 34 H 1.09003 * 109.34865 * 301.12729 * 8 7 5 35 35 H 1.09001 * 109.44215 * 181.23313 * 8 7 5 36 36 H 1.09004 * 109.49581 * 178.74747 * 9 8 7 37 37 H 1.08998 * 109.52297 * 58.67053 * 9 8 7 38 38 H 1.08999 * 109.58798 * 294.84859 * 10 9 8 39 39 H 1.09005 * 109.70390 * 174.49569 * 10 9 8 40 40 H 1.00902 * 111.00118 * 60.00450 * 16 14 12 41 41 H 1.00902 * 110.99855 * 183.95316 * 16 14 12 42 42 H 1.08999 * 109.47449 * 295.00415 * 17 14 12 43 43 H 1.08998 * 109.47133 * 55.00585 * 17 14 12 44 44 H 1.08998 * 109.46951 * 299.99898 * 18 17 14 45 45 H 1.09002 * 109.46906 * 60.00730 * 18 17 14 46 46 H 0.96997 * 119.99871 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0399 -0.7211 1.2494 6 1 1.8142 -1.7849 1.1750 7 6 1.3606 -0.1377 2.4923 8 6 1.9776 -0.7624 3.7462 9 6 3.4701 -0.4291 3.8063 10 6 4.1706 -1.0182 2.5780 11 7 3.4922 -0.5329 1.3685 12 6 4.1888 0.0731 0.3866 13 8 3.6057 0.5632 -0.5570 14 6 5.6924 0.1417 0.4616 15 1 6.0809 -0.8038 0.8401 16 7 6.2384 0.3938 -0.8787 17 6 6.1050 1.2757 1.4020 18 6 7.6251 1.2666 1.5759 19 6 8.0313 2.3833 2.5027 20 1 7.2806 3.0342 2.9258 21 6 9.3617 2.5740 2.8106 22 7 10.2761 1.7811 2.2959 23 14 9.8653 3.9578 3.9600 24 1 9.2153 3.7652 5.2813 25 1 11.3407 3.9490 4.1287 26 1 9.4403 5.2589 3.3843 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.6961 -1.6481 -1.2225 31 1 1.7503 -0.1992 -2.0372 32 1 1.5092 0.9418 2.5153 33 1 0.2935 -0.3580 2.4609 34 1 1.8482 -1.8442 3.7118 35 1 1.4809 -0.3652 4.6314 36 1 3.9021 -0.8562 4.7113 37 1 3.6016 0.6529 3.8161 38 1 4.1185 -2.1064 2.6145 39 1 5.2139 -0.7027 2.5633 40 1 5.8930 1.2654 -1.2518 41 1 7.2473 0.3803 -0.8666 42 1 5.7935 2.2305 0.9784 43 1 5.6275 1.1355 2.3717 44 1 7.9365 0.3118 1.9996 45 1 8.1026 1.4070 0.6062 46 1 11.2120 1.9151 2.5128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424055861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:11 Heat of formation + Delta-G solvation = -21.746515 kcal Electronic energy + Delta-G solvation = -24188.400402 eV Core-core repulsion = 20920.197376 eV Total energy + Delta-G solvation = -3268.203026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43854 -37.39299 -36.08092 -34.81174 -32.78464 -32.59819 -30.71982 -29.78238 -28.21572 -26.73528 -25.11615 -23.81794 -23.23102 -20.86535 -20.64185 -20.29318 -18.62750 -16.99126 -16.20491 -16.01473 -15.40633 -14.96849 -14.77937 -14.56463 -14.40797 -14.13605 -13.77239 -13.47861 -13.44737 -13.06771 -13.05620 -12.85847 -12.49957 -12.38414 -11.98877 -11.71504 -11.54409 -11.51539 -11.07404 -10.97905 -10.90194 -10.83706 -10.65441 -10.58623 -10.35973 -9.89515 -9.61396 -9.21769 -8.57219 -8.40237 -8.37293 -7.97011 -7.88010 -6.05093 -4.08058 3.26669 3.29996 3.32774 3.34982 3.37852 4.41630 4.51241 4.62549 4.80639 4.96184 5.05184 5.12540 5.19275 5.25287 5.28299 5.30904 5.38600 5.40121 5.55157 5.64208 5.67025 5.72914 5.77952 5.85794 5.91780 5.92298 5.97490 6.01204 6.05756 6.22786 6.39487 6.41842 6.62770 6.88951 6.96079 7.50185 7.55716 7.63367 7.68539 7.74933 7.91865 7.92990 8.05703 8.35725 8.88679 8.97859 9.56515 11.05728 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.021538 B = 0.004482 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.691501 B = 6245.072440 C = 6970.011529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.100 3.900 3 H 0.103 0.897 4 N -0.804 5.804 5 C 0.160 3.840 6 H 0.061 0.939 7 C -0.132 4.132 8 C -0.117 4.117 9 C -0.136 4.136 10 C 0.103 3.897 11 N -0.612 5.612 12 C 0.523 3.477 13 O -0.487 6.487 14 C 0.075 3.925 15 H 0.089 0.911 16 N -0.827 5.827 17 C -0.140 4.140 18 C 0.025 3.975 19 C -0.523 4.523 20 H 0.053 0.947 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.312 0.688 31 H 0.337 0.663 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.343 0.657 41 H 0.349 0.651 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.276 -6.972 -0.049 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.012 4.012 3 H 0.121 0.879 4 N -0.333 5.333 5 C 0.056 3.944 6 H 0.078 0.922 7 C -0.171 4.171 8 C -0.155 4.155 9 C -0.174 4.174 10 C -0.020 4.020 11 N -0.349 5.349 12 C 0.310 3.690 13 O -0.358 6.358 14 C -0.040 4.040 15 H 0.107 0.893 16 N -0.358 5.358 17 C -0.179 4.179 18 C -0.012 4.012 19 C -0.561 4.561 20 H 0.071 0.929 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.719 3.281 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.004 -7.257 -0.539 19.419 hybrid contribution -0.222 1.372 1.086 1.764 sum -18.226 -5.885 0.547 19.160 Atomic orbital electron populations 1.22897 0.99359 1.01298 1.02048 1.21617 0.89323 1.00782 0.89507 0.87881 1.59135 1.66304 1.04117 1.03703 1.21087 0.80564 0.98526 0.94229 0.92153 1.22048 0.99394 1.01145 0.94503 1.21505 0.95908 1.00547 0.97533 1.21918 0.95333 1.02156 0.98042 1.21795 0.97972 0.98289 0.83948 1.47879 1.06710 1.60964 1.19337 1.20534 0.89365 0.77949 0.81141 1.90628 1.69392 1.43672 1.32141 1.21485 0.91083 1.00419 0.91053 0.89347 1.58724 1.13643 1.42279 1.21181 1.22433 1.01259 0.96321 0.97904 1.19090 0.87815 0.97283 0.97021 1.21149 0.92185 1.14608 1.28134 0.92871 1.25003 0.96737 0.96280 0.96215 1.69941 1.01016 1.38049 1.44216 0.86671 0.77376 0.82673 0.81364 1.20248 1.21239 1.20271 0.93316 0.92097 0.92851 0.87558 0.85011 0.91412 0.91051 0.92081 0.91892 0.90736 0.91155 0.92133 0.88483 0.84426 0.83588 0.92969 0.92532 0.96491 0.96486 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 8.89 37.16 0.33 -1.53 16 2 C 0.10 1.22 2.19 -67.71 -0.15 1.07 16 3 H 0.10 1.59 6.32 -51.93 -0.33 1.26 16 4 N -0.80 -10.40 6.33 -4.67 -0.03 -10.43 16 5 C 0.16 1.91 2.73 -67.60 -0.18 1.72 16 6 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 7 C -0.13 -1.33 4.56 -26.60 -0.12 -1.45 16 8 C -0.12 -1.11 5.88 -26.67 -0.16 -1.27 16 9 C -0.14 -1.52 6.08 -26.61 -0.16 -1.68 16 10 C 0.10 1.30 5.72 -3.71 -0.02 1.28 16 11 N -0.61 -8.57 2.97 -165.22 -0.49 -9.06 16 12 C 0.52 8.83 6.64 -10.99 -0.07 8.75 16 13 O -0.49 -8.84 10.31 5.56 0.06 -8.78 16 14 C 0.07 1.33 2.35 -68.86 -0.16 1.17 16 15 H 0.09 1.56 7.10 -51.93 -0.37 1.19 16 16 N -0.83 -14.87 8.94 -5.65 -0.05 -14.92 16 17 C -0.14 -2.79 4.40 -26.73 -0.12 -2.91 16 18 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 19 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 20 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 23 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.54 6.45 -51.93 -0.34 0.20 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.31 3.57 9.00 -39.29 -0.35 3.22 16 31 H 0.34 4.20 9.07 -39.29 -0.36 3.85 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.60 6.69 -51.93 -0.35 0.26 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 1.38 4.60 -51.93 -0.24 1.15 16 40 H 0.34 6.21 8.58 -39.29 -0.34 5.87 16 41 H 0.35 6.35 7.55 -39.29 -0.30 6.06 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.09 6.52 -51.93 -0.34 0.75 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -29.92 345.81 -8.80 -38.71 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -7.85 Total: 15.86 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.36 Total: -7.49 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.16 Total: -59.83 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.92 -8.80 -38.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424055861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.968 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds