Wall clock time and date at job start Tue Mar 31 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47487 * 2 1 4 4 N 1.46902 * 109.47115 * 240.00033 * 2 1 3 5 5 C 1.52996 * 109.47415 * 120.00359 * 2 1 3 6 6 H 1.08998 * 109.70773 * 176.63877 * 5 2 1 7 7 C 1.52768 * 109.51252 * 56.51998 * 5 2 1 8 8 C 1.53036 * 109.38668 * 185.70934 * 7 5 2 9 9 C 1.53039 * 109.53614 * 61.23812 * 8 7 5 10 10 C 1.53186 * 109.31788 * 298.63816 * 9 8 7 11 11 N 1.46927 * 108.77641 * 54.63326 * 10 9 8 12 12 C 1.34778 * 120.63019 * 126.36929 * 11 10 9 13 13 O 1.21278 * 119.99901 * 173.97335 * 12 11 10 14 14 C 1.50700 * 119.99724 * 353.97683 * 12 11 10 15 15 H 1.08994 * 109.47454 * 319.99619 * 14 12 11 16 16 N 1.46900 * 109.46668 * 199.99874 * 14 12 11 17 17 C 1.53002 * 109.46998 * 80.00350 * 14 12 11 18 18 C 1.53001 * 109.46633 * 184.99642 * 17 14 12 19 19 C 1.50705 * 109.46966 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37870 * 120.00191 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99934 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00251 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46937 * 269.99773 * 23 21 19 25 25 H 1.48507 * 109.46917 * 29.99351 * 23 21 19 26 26 H 1.48494 * 109.47390 * 149.99605 * 23 21 19 27 27 H 1.08998 * 109.46778 * 291.57912 * 1 2 3 28 28 H 1.09003 * 109.46952 * 51.57782 * 1 2 3 29 29 H 1.09004 * 109.47097 * 171.57851 * 1 2 3 30 30 H 1.00905 * 111.00158 * 64.93964 * 4 2 1 31 31 H 1.00904 * 111.00286 * 188.89184 * 4 2 1 32 32 H 1.09002 * 109.56074 * 65.67336 * 7 5 2 33 33 H 1.08997 * 109.38530 * 305.64347 * 7 5 2 34 34 H 1.09000 * 109.45911 * 301.22474 * 8 7 5 35 35 H 1.08994 * 109.45090 * 181.25670 * 8 7 5 36 36 H 1.09001 * 109.49373 * 178.68176 * 9 8 7 37 37 H 1.08998 * 109.51856 * 58.60924 * 9 8 7 38 38 H 1.09005 * 109.58290 * 294.84638 * 10 9 8 39 39 H 1.09000 * 109.70431 * 174.49428 * 10 9 8 40 40 H 1.00896 * 110.99997 * 176.04939 * 16 14 12 41 41 H 1.00902 * 110.99902 * 299.99969 * 16 14 12 42 42 H 1.08999 * 109.47224 * 64.99573 * 17 14 12 43 43 H 1.09005 * 109.46874 * 304.99146 * 17 14 12 44 44 H 1.08999 * 109.47372 * 60.00021 * 18 17 14 45 45 H 1.08997 * 109.47186 * 299.99612 * 18 17 14 46 46 H 0.97001 * 120.00324 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2491 6 1 3.1284 -0.7759 1.2234 7 6 1.4613 -2.1344 1.2945 8 6 1.8568 -2.8032 2.6129 9 6 1.2802 -2.0054 3.7847 10 6 1.8619 -0.5883 3.7679 11 7 1.6118 0.0099 2.4494 12 6 0.9961 1.2041 2.3429 13 8 0.8928 1.7385 1.2591 14 6 0.4363 1.8754 3.5705 15 1 -0.0297 1.1282 4.2126 16 7 -0.5669 2.8708 3.1696 17 6 1.5670 2.5693 4.3327 18 6 1.0218 3.1442 5.6416 19 6 2.1356 3.8271 6.3928 20 1 3.1327 3.8486 5.9783 21 6 1.8820 4.4237 7.6096 22 7 0.6680 4.3971 8.1146 23 14 3.2624 5.2708 8.5404 24 1 3.9267 4.2926 9.4388 25 1 4.2539 5.8082 7.5741 26 1 2.7041 6.3849 9.3479 27 1 -0.3633 0.3780 0.9556 28 1 -0.3633 0.6387 -0.8052 29 1 -0.3633 -1.0166 -0.1505 30 1 1.7640 -0.1905 -2.0366 31 1 3.0177 -0.8340 -1.1533 32 1 1.8525 -2.7160 0.4597 33 1 0.3748 -2.0827 1.2243 34 1 2.9434 -2.8327 2.6935 35 1 1.4632 -3.8193 2.6368 36 1 1.5425 -2.4953 4.7224 37 1 0.1954 -1.9545 3.6919 38 1 2.9354 -0.6319 3.9517 39 1 1.3832 0.0146 4.5395 40 1 -1.0036 3.2895 3.9771 41 1 -0.1592 3.5752 2.5732 42 1 1.9744 3.3760 3.7234 43 1 2.3534 1.8472 4.5527 44 1 0.6144 2.3375 6.2510 45 1 0.2354 3.8662 5.4216 46 1 0.4894 4.8171 8.9705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424055863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:14 Heat of formation + Delta-G solvation = -24.943865 kcal Electronic energy + Delta-G solvation = -24169.497890 eV Core-core repulsion = 20901.156216 eV Total energy + Delta-G solvation = -3268.341673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92126 -37.59058 -36.21550 -34.89459 -32.89293 -32.73913 -30.60145 -29.90133 -28.34645 -26.87953 -25.34323 -23.95080 -23.43375 -21.09221 -20.66413 -19.98469 -18.65089 -17.21029 -16.35068 -16.12321 -15.55988 -15.26159 -15.14997 -14.70097 -14.56492 -14.47751 -14.07120 -13.62312 -13.55455 -13.17057 -12.95130 -12.87552 -12.32259 -12.20691 -12.02581 -11.76932 -11.60849 -11.12487 -11.02750 -10.96505 -10.88530 -10.78731 -10.69241 -10.59972 -10.38557 -10.00085 -9.77811 -9.29489 -9.24507 -8.51943 -8.45956 -8.28610 -8.01920 -6.10584 -4.13851 2.87917 3.04468 3.25194 3.32308 3.35429 4.37198 4.46197 4.66452 4.76617 4.82357 4.90622 5.03819 5.15968 5.18326 5.24225 5.25738 5.41950 5.52916 5.57405 5.70451 5.75874 5.78245 5.82942 5.88472 5.91550 5.98974 6.08399 6.16995 6.23833 6.31165 6.33457 6.50482 6.57778 6.71667 6.84827 7.17733 7.39568 7.43470 7.49613 7.58484 7.65210 7.86275 7.89591 8.28880 8.46480 8.92053 9.51284 11.00248 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.004183 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.113143 B = 6692.392721 C = 7165.488824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.081 3.919 3 H 0.082 0.918 4 N -0.855 5.855 5 C 0.154 3.846 6 H 0.062 0.938 7 C -0.123 4.123 8 C -0.121 4.121 9 C -0.136 4.136 10 C 0.103 3.897 11 N -0.608 5.608 12 C 0.525 3.475 13 O -0.525 6.525 14 C 0.072 3.928 15 H 0.095 0.905 16 N -0.830 5.830 17 C -0.139 4.139 18 C 0.025 3.975 19 C -0.524 4.524 20 H 0.054 0.946 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.274 1.274 26 H -0.286 1.286 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.341 0.659 31 H 0.333 0.667 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.353 0.647 41 H 0.345 0.655 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -13.177 -12.320 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.028 4.028 3 H 0.099 0.901 4 N -0.386 5.386 5 C 0.051 3.949 6 H 0.080 0.920 7 C -0.161 4.161 8 C -0.159 4.159 9 C -0.175 4.175 10 C -0.020 4.020 11 N -0.343 5.343 12 C 0.314 3.686 13 O -0.402 6.402 14 C -0.043 4.043 15 H 0.113 0.887 16 N -0.362 5.362 17 C -0.179 4.179 18 C -0.012 4.012 19 C -0.562 4.562 20 H 0.072 0.928 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.199 1.199 26 H -0.211 1.211 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.169 0.831 41 H 0.158 0.842 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.810 -14.010 -12.842 19.022 hybrid contribution 1.995 1.906 1.111 2.974 sum 2.804 -12.104 -11.731 17.088 Atomic orbital electron populations 1.21971 0.93983 0.99600 1.02831 1.22052 0.96706 0.96462 0.87609 0.90051 1.58769 1.18567 1.56353 1.04904 1.21094 0.97599 0.91700 0.84535 0.92012 1.21847 1.01917 0.94972 0.97397 1.21558 1.00673 0.98874 0.94803 1.21934 1.01178 0.95388 0.98951 1.21880 1.01143 0.94417 0.84542 1.48062 1.59784 1.19733 1.06768 1.20739 0.76685 0.80268 0.90869 1.90625 1.57306 1.64337 1.27920 1.21536 0.94034 0.96027 0.92674 0.88697 1.58761 1.32862 1.20778 1.23777 1.22428 0.96699 0.99484 0.99288 1.19095 0.96489 0.95843 0.89781 1.21170 0.95495 1.35426 1.04112 0.92774 1.25000 0.95540 0.96185 0.97499 1.69946 1.19636 1.44599 1.18978 0.86598 0.82229 0.79309 0.79908 1.20594 1.19910 1.21137 0.90915 0.93707 0.93978 0.84685 0.85562 0.90264 0.91210 0.92089 0.91881 0.90665 0.91379 0.91257 0.88463 0.83135 0.84233 0.92753 0.92473 0.96395 0.96419 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 7.53 37.16 0.28 -1.51 16 2 C 0.08 1.06 2.62 -67.71 -0.18 0.88 16 3 H 0.08 1.28 5.82 -52.52 -0.31 0.97 16 4 N -0.85 -8.87 8.76 -4.67 -0.04 -8.91 16 5 C 0.15 1.88 2.75 -67.82 -0.19 1.69 16 6 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.12 -1.31 4.88 -26.83 -0.13 -1.44 16 8 C -0.12 -1.13 5.89 -26.69 -0.16 -1.29 16 9 C -0.14 -1.36 6.08 -26.62 -0.16 -1.53 16 10 C 0.10 1.23 5.52 -3.71 -0.02 1.21 16 11 N -0.61 -8.20 2.92 -165.47 -0.48 -8.68 16 12 C 0.52 8.43 5.29 -10.98 -0.06 8.37 16 13 O -0.53 -9.24 10.19 5.56 0.06 -9.18 16 14 C 0.07 1.21 2.35 -68.86 -0.16 1.05 16 15 H 0.10 1.55 6.85 -51.93 -0.36 1.19 16 16 N -0.83 -14.02 8.94 -5.65 -0.05 -14.07 16 17 C -0.14 -2.69 4.45 -26.73 -0.12 -2.80 16 18 C 0.03 0.60 4.74 -27.88 -0.13 0.46 16 19 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 23 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.07 1.18 4.97 -51.93 -0.26 0.93 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.57 6.75 -51.93 -0.35 0.21 16 30 H 0.34 3.26 9.07 -39.29 -0.36 2.91 16 31 H 0.33 2.97 8.93 -39.29 -0.35 2.62 16 32 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16 33 H 0.07 0.83 6.24 -51.93 -0.32 0.51 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.27 4.93 -51.93 -0.26 1.01 16 40 H 0.35 6.05 7.55 -39.29 -0.30 5.75 16 41 H 0.34 5.88 8.58 -39.29 -0.34 5.55 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.06 6.75 -51.93 -0.35 0.71 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 46 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -29.11 342.13 -8.74 -37.85 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -7.65 Total: 14.66 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.44 Total: -7.86 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.16 Total: -56.67 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.06 Total: -9.18 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.11 -8.74 -37.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424055863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.904 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds