Wall clock time and date at job start Tue Mar 31 2020 02:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47487 * 2 1 4 4 N 1.46902 * 109.47115 * 240.00033 * 2 1 3 5 5 C 1.52996 * 109.47415 * 120.00359 * 2 1 3 6 6 H 1.08998 * 109.70773 * 176.63877 * 5 2 1 7 7 C 1.52768 * 109.51252 * 56.51998 * 5 2 1 8 8 C 1.53036 * 109.38668 * 185.70934 * 7 5 2 9 9 C 1.53039 * 109.53614 * 61.23812 * 8 7 5 10 10 C 1.53186 * 109.31788 * 298.63816 * 9 8 7 11 11 N 1.46927 * 108.77641 * 54.63326 * 10 9 8 12 12 C 1.34778 * 120.63019 * 126.36929 * 11 10 9 13 13 O 1.21278 * 119.99901 * 173.97335 * 12 11 10 14 14 C 1.50700 * 119.99724 * 353.97683 * 12 11 10 15 15 H 1.08994 * 109.47454 * 319.99619 * 14 12 11 16 16 N 1.46900 * 109.46668 * 199.99874 * 14 12 11 17 17 C 1.53002 * 109.46998 * 80.00350 * 14 12 11 18 18 C 1.53001 * 109.46633 * 184.99642 * 17 14 12 19 19 C 1.50705 * 109.46966 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37870 * 120.00191 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99934 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00251 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46937 * 269.99773 * 23 21 19 25 25 H 1.48507 * 109.46917 * 29.99351 * 23 21 19 26 26 H 1.48494 * 109.47390 * 149.99605 * 23 21 19 27 27 H 1.08998 * 109.46778 * 291.57912 * 1 2 3 28 28 H 1.09003 * 109.46952 * 51.57782 * 1 2 3 29 29 H 1.09004 * 109.47097 * 171.57851 * 1 2 3 30 30 H 1.00905 * 111.00158 * 64.93964 * 4 2 1 31 31 H 1.00904 * 111.00286 * 188.89184 * 4 2 1 32 32 H 1.09002 * 109.56074 * 65.67336 * 7 5 2 33 33 H 1.08997 * 109.38530 * 305.64347 * 7 5 2 34 34 H 1.09000 * 109.45911 * 301.22474 * 8 7 5 35 35 H 1.08994 * 109.45090 * 181.25670 * 8 7 5 36 36 H 1.09001 * 109.49373 * 178.68176 * 9 8 7 37 37 H 1.08998 * 109.51856 * 58.60924 * 9 8 7 38 38 H 1.09005 * 109.58290 * 294.84638 * 10 9 8 39 39 H 1.09000 * 109.70431 * 174.49428 * 10 9 8 40 40 H 1.00896 * 110.99997 * 176.04939 * 16 14 12 41 41 H 1.00902 * 110.99902 * 299.99969 * 16 14 12 42 42 H 1.08999 * 109.47224 * 64.99573 * 17 14 12 43 43 H 1.09005 * 109.46874 * 304.99146 * 17 14 12 44 44 H 1.08999 * 109.47372 * 60.00021 * 18 17 14 45 45 H 1.08997 * 109.47186 * 299.99612 * 18 17 14 46 46 H 0.97001 * 120.00324 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2491 6 1 3.1284 -0.7759 1.2234 7 6 1.4613 -2.1344 1.2945 8 6 1.8568 -2.8032 2.6129 9 6 1.2802 -2.0054 3.7847 10 6 1.8619 -0.5883 3.7679 11 7 1.6118 0.0099 2.4494 12 6 0.9961 1.2041 2.3429 13 8 0.8928 1.7385 1.2591 14 6 0.4363 1.8754 3.5705 15 1 -0.0297 1.1282 4.2126 16 7 -0.5669 2.8708 3.1696 17 6 1.5670 2.5693 4.3327 18 6 1.0218 3.1442 5.6416 19 6 2.1356 3.8271 6.3928 20 1 3.1327 3.8486 5.9783 21 6 1.8820 4.4237 7.6096 22 7 0.6680 4.3971 8.1146 23 14 3.2624 5.2708 8.5404 24 1 3.9267 4.2926 9.4388 25 1 4.2539 5.8082 7.5741 26 1 2.7041 6.3849 9.3479 27 1 -0.3633 0.3780 0.9556 28 1 -0.3633 0.6387 -0.8052 29 1 -0.3633 -1.0166 -0.1505 30 1 1.7640 -0.1905 -2.0366 31 1 3.0177 -0.8340 -1.1533 32 1 1.8525 -2.7160 0.4597 33 1 0.3748 -2.0827 1.2243 34 1 2.9434 -2.8327 2.6935 35 1 1.4632 -3.8193 2.6368 36 1 1.5425 -2.4953 4.7224 37 1 0.1954 -1.9545 3.6919 38 1 2.9354 -0.6319 3.9517 39 1 1.3832 0.0146 4.5395 40 1 -1.0036 3.2895 3.9771 41 1 -0.1592 3.5752 2.5732 42 1 1.9744 3.3760 3.7234 43 1 2.3534 1.8472 4.5527 44 1 0.6144 2.3375 6.2510 45 1 0.2354 3.8662 5.4216 46 1 0.4894 4.8171 8.9705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424055863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:13 Heat of formation + Delta-G solvation = -46.133193 kcal Electronic energy + Delta-G solvation = -24170.416728 eV Core-core repulsion = 20901.156216 eV Total energy + Delta-G solvation = -3269.260511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.06863 -38.73020 -37.50165 -36.14560 -34.79781 -33.76341 -31.69550 -31.50549 -29.38927 -28.37540 -26.72501 -25.20146 -24.67650 -22.50328 -21.74682 -21.24941 -19.84332 -18.62332 -18.12901 -17.21955 -16.68817 -16.59185 -16.34103 -16.21876 -15.77198 -15.60349 -15.18022 -14.94938 -14.78249 -14.44972 -14.27988 -14.06036 -13.87168 -13.44973 -13.30528 -13.02217 -12.93843 -12.72231 -12.59309 -12.50523 -11.99777 -11.87463 -11.83854 -11.75311 -11.64212 -11.48972 -11.29171 -11.26992 -10.56769 -10.49205 -9.74122 -9.48979 -9.14787 -8.21490 -6.32029 1.39256 1.40249 1.50541 1.61325 1.93909 2.39668 3.12187 3.38821 3.72814 3.74867 3.82278 3.90769 4.01035 4.05933 4.12075 4.23783 4.27218 4.30128 4.50057 4.60839 4.68575 4.69593 4.76222 4.83992 4.95429 4.99254 5.02773 5.07360 5.12691 5.21575 5.24993 5.28660 5.38739 5.46038 5.52596 5.64367 5.70400 5.80079 6.06435 6.20678 6.25580 6.42378 6.47202 6.64507 6.83172 7.23760 7.37280 8.89178 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.004183 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.113143 B = 6692.392721 C = 7165.488824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.090 3.910 3 H 0.053 0.947 4 N -0.846 5.846 5 C 0.151 3.849 6 H 0.073 0.927 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.132 4.132 10 C 0.097 3.903 11 N -0.602 5.602 12 C 0.522 3.478 13 O -0.544 6.544 14 C 0.080 3.920 15 H 0.100 0.900 16 N -0.828 5.828 17 C -0.120 4.120 18 C 0.032 3.968 19 C -0.544 4.544 20 H 0.054 0.946 21 C 0.007 3.993 22 N -0.926 5.926 23 Si 0.958 3.042 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.283 1.283 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.347 0.653 31 H 0.344 0.656 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.351 0.649 41 H 0.343 0.657 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.001 0.999 45 H 0.001 0.999 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -14.718 -12.570 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.021 4.021 3 H 0.071 0.929 4 N -0.379 5.379 5 C 0.048 3.952 6 H 0.091 0.909 7 C -0.153 4.153 8 C -0.154 4.154 9 C -0.170 4.170 10 C -0.026 4.026 11 N -0.336 5.336 12 C 0.311 3.689 13 O -0.422 6.422 14 C -0.036 4.036 15 H 0.118 0.882 16 N -0.359 5.359 17 C -0.160 4.160 18 C -0.005 4.005 19 C -0.582 4.582 20 H 0.072 0.928 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.783 3.217 24 H -0.196 1.196 25 H -0.193 1.193 26 H -0.209 1.209 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.020 0.980 45 H 0.019 0.981 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.319 -15.584 -13.104 20.493 hybrid contribution 1.514 2.366 1.159 3.039 sum 3.833 -13.217 -11.946 18.223 Atomic orbital electron populations 1.21846 0.95000 0.99519 1.01156 1.21765 0.95765 0.95396 0.89148 0.92916 1.58717 1.19457 1.55579 1.04127 1.21240 0.98226 0.92276 0.83437 0.90926 1.21775 1.00894 0.93918 0.98730 1.21546 1.01331 0.99229 0.93318 1.21913 1.00565 0.94168 1.00327 1.22033 1.01870 0.95376 0.83271 1.48089 1.58601 1.18933 1.08022 1.20511 0.77164 0.81127 0.90075 1.90644 1.58180 1.65163 1.28238 1.21435 0.93041 0.95889 0.93189 0.88223 1.58769 1.32841 1.20790 1.23517 1.22158 0.97537 0.99233 0.97085 1.18946 0.95365 0.94772 0.91419 1.21595 0.96233 1.35666 1.04698 0.92800 1.25837 0.97889 0.96880 0.98519 1.70059 1.21554 1.45534 1.19470 0.85560 0.79280 0.78298 0.78596 1.19601 1.19310 1.20861 0.93163 0.94592 0.93264 0.84063 0.84296 0.89319 0.92586 0.91030 0.90342 0.88932 0.92224 0.90108 0.89887 0.83458 0.84363 0.93917 0.91640 0.98036 0.98093 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 7.53 71.98 0.54 -2.77 16 2 C 0.09 2.25 2.62 44.91 0.12 2.37 16 3 H 0.05 1.66 5.82 -11.63 -0.07 1.59 16 4 N -0.85 -16.09 8.76 -168.69 -1.48 -17.57 16 5 C 0.15 3.42 2.75 44.83 0.12 3.55 16 6 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 7 C -0.12 -2.17 4.88 30.53 0.15 -2.02 16 8 C -0.12 -1.81 5.89 30.62 0.18 -1.63 16 9 C -0.13 -2.34 6.08 30.67 0.19 -2.15 16 10 C 0.10 2.17 5.52 86.36 0.48 2.65 16 11 N -0.60 -15.66 2.92 -795.82 -2.32 -17.98 16 12 C 0.52 16.77 5.29 87.66 0.46 17.23 16 13 O -0.54 -19.36 10.19 -3.02 -0.03 -19.39 16 14 C 0.08 2.70 2.35 44.17 0.10 2.80 16 15 H 0.10 3.28 6.85 -2.39 -0.02 3.27 16 16 N -0.83 -28.66 8.94 -171.80 -1.54 -30.19 16 17 C -0.12 -4.69 4.45 30.60 0.14 -4.55 16 18 C 0.03 1.57 4.74 29.85 0.14 1.71 16 19 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 20 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 21 C 0.01 0.41 5.46 84.65 0.46 0.87 16 22 N -0.93 -53.97 13.29 21.44 0.28 -53.69 16 23 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 27 H 0.05 1.64 4.97 -2.39 -0.01 1.63 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.28 6.75 -2.39 -0.02 1.27 16 30 H 0.35 6.12 9.07 -89.69 -0.81 5.31 16 31 H 0.34 5.37 8.93 -89.69 -0.80 4.57 16 32 H 0.09 1.54 7.88 -2.39 -0.02 1.53 16 33 H 0.06 1.23 6.24 -2.39 -0.01 1.22 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.08 2.11 4.93 -2.39 -0.01 2.10 16 40 H 0.35 12.40 7.55 -89.70 -0.68 11.73 16 41 H 0.34 12.04 8.58 -89.69 -0.77 11.27 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 2.42 6.75 -2.38 -0.02 2.40 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.00 0.04 6.87 -2.39 -0.02 0.02 16 46 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -62.17 342.13 -1.84 -64.01 By element: Atomic # 1 Polarization: 43.23 SS G_CDS: -2.10 Total: 41.13 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 3.32 Total: -11.36 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -5.05 Total: -119.43 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.03 Total: -19.39 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -62.17 -1.84 -64.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424055863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.875 kcal (2) G-P(sol) polarization free energy of solvation -62.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds