Wall clock time and date at job start Tue Mar 31 2020 02:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46902 * 109.46789 * 2 1 4 4 C 1.47440 * 110.99979 * 63.95071 * 3 2 1 5 5 C 1.54320 * 107.23379 * 236.74082 * 4 3 2 6 6 C 1.55143 * 103.17664 * 337.62838 * 5 4 3 7 7 C 1.47849 * 111.00171 * 303.10987 * 3 2 1 8 8 H 1.08998 * 110.37465 * 27.42059 * 7 3 2 9 9 C 1.52997 * 110.37034 * 265.19538 * 7 3 2 10 10 N 1.46500 * 109.47475 * 62.14610 * 9 7 3 11 11 C 1.34777 * 120.00359 * 187.01161 * 10 9 7 12 12 O 1.21283 * 119.99764 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00190 * 180.02562 * 11 10 9 14 14 H 1.08998 * 109.47164 * 40.00139 * 13 11 10 15 15 N 1.46892 * 109.47153 * 160.00239 * 13 11 10 16 16 C 1.53004 * 109.46643 * 280.00069 * 13 11 10 17 17 C 1.53002 * 109.46753 * 175.00240 * 16 13 11 18 18 C 1.50702 * 109.47161 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99891 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00407 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00276 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99719 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47077 * 89.99676 * 22 20 18 24 24 H 1.48500 * 109.46792 * 209.99994 * 22 20 18 25 25 H 1.48504 * 109.46781 * 329.99911 * 22 20 18 26 26 H 1.08998 * 109.46659 * 177.31398 * 1 2 3 27 27 H 1.09007 * 109.46912 * 297.30531 * 1 2 3 28 28 H 1.08997 * 109.47200 * 57.31193 * 1 2 3 29 29 H 1.08999 * 109.46883 * 240.00410 * 2 1 3 30 30 H 1.08995 * 109.47203 * 119.99700 * 2 1 3 31 31 H 1.09002 * 109.88874 * 117.33296 * 4 3 2 32 32 H 1.09003 * 110.02615 * 356.22405 * 4 3 2 33 33 H 1.08997 * 110.70930 * 96.10255 * 5 4 3 34 34 H 1.09000 * 110.70682 * 219.16222 * 5 4 3 35 35 H 1.08996 * 110.98687 * 153.83022 * 6 5 4 36 36 H 1.09000 * 110.99097 * 277.64897 * 6 5 4 37 37 H 1.08996 * 109.47099 * 182.15099 * 9 7 3 38 38 H 1.09005 * 109.47390 * 302.14793 * 9 7 3 39 39 H 0.97005 * 119.99994 * 7.02098 * 10 9 7 40 40 H 1.00902 * 111.00108 * 296.04502 * 15 13 11 41 41 H 1.00904 * 111.00311 * 59.99835 * 15 13 11 42 42 H 1.09000 * 109.47038 * 294.99942 * 16 13 11 43 43 H 1.08995 * 109.47167 * 55.00200 * 16 13 11 44 44 H 1.09000 * 109.47106 * 299.99661 * 17 16 13 45 45 H 1.08995 * 109.47317 * 60.00052 * 17 16 13 46 46 H 0.96999 * 119.99910 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6259 2.0847 1.2366 5 6 0.8312 3.3397 0.8186 6 6 1.3046 3.5893 -0.6376 7 6 1.4854 2.1359 -1.1561 8 1 0.5271 1.7208 -1.4681 9 6 2.4813 2.1053 -2.3173 10 7 2.6814 0.7209 -2.7527 11 6 3.6248 0.4329 -3.6712 12 8 4.3083 1.3200 -4.1369 13 6 3.8302 -0.9911 -4.1195 14 1 2.8628 -1.4818 -4.2255 15 7 4.5290 -1.0017 -5.4115 16 6 4.6692 -1.7369 -3.0798 17 6 4.7732 -3.2123 -3.4716 18 6 5.5990 -3.9471 -2.4473 19 1 6.0090 -3.4149 -1.6017 20 6 5.8311 -5.2986 -2.5897 21 7 6.5521 -5.9398 -1.6961 22 14 5.1225 -6.2190 -4.0528 23 1 6.0937 -6.1863 -5.1758 24 1 4.8565 -7.6287 -3.6692 25 1 3.8540 -5.5734 -4.4765 26 1 -0.3632 -1.0265 -0.0482 27 1 -0.3633 0.4715 0.9132 28 1 -0.3633 0.5550 -0.8649 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.5144 2.3775 1.7960 32 1 0.9994 1.4361 1.8491 33 1 -0.2408 3.1445 0.8473 34 1 1.0845 4.1865 1.4566 35 1 0.5437 4.1198 -1.2099 36 1 2.2507 4.1304 -0.6532 37 1 2.0902 2.6942 -3.1469 38 1 3.4330 2.5247 -1.9909 39 1 2.1349 0.0114 -2.3800 40 1 3.9665 -0.5715 -6.1303 41 1 5.4294 -0.5521 -5.3394 42 1 5.6673 -1.3009 -3.0378 43 1 4.1947 -1.6532 -2.1021 44 1 3.7751 -3.6483 -3.5137 45 1 5.2477 -3.2960 -4.4493 46 1 6.7157 -6.8906 -1.7965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424133075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:21 Heat of formation + Delta-G solvation = -66.679726 kcal Electronic energy + Delta-G solvation = -23270.875494 eV Core-core repulsion = 20000.724018 eV Total energy + Delta-G solvation = -3270.151476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26794 -40.25272 -36.88695 -35.75717 -34.77363 -34.20895 -32.27715 -31.20695 -29.61605 -28.47449 -26.48513 -24.82308 -23.74353 -22.39619 -21.94921 -21.27731 -20.49293 -18.93130 -18.17803 -17.76024 -17.27127 -16.77179 -16.28175 -16.18575 -15.93438 -15.48180 -15.13545 -15.00560 -14.88043 -14.65973 -14.41742 -13.98242 -13.61105 -13.45166 -13.41596 -13.03245 -12.81607 -12.57352 -12.53773 -12.34627 -12.21398 -12.03678 -11.91376 -11.78555 -11.68077 -11.60461 -11.44896 -11.27324 -11.09709 -10.70088 -10.07630 -9.66005 -9.22892 -8.23665 -6.26970 1.42127 1.43677 1.53868 1.56420 2.21672 2.42434 2.93657 3.12887 3.56294 3.63922 3.69801 3.79455 3.99716 4.07203 4.10248 4.16725 4.26027 4.27360 4.29649 4.51368 4.58103 4.59370 4.71404 4.74096 4.82497 4.86072 4.92437 4.98136 5.02101 5.05185 5.13307 5.14837 5.31909 5.37155 5.45250 5.51377 5.66331 5.73690 6.03979 6.07208 6.13250 6.34087 6.45315 6.54389 6.81461 7.16856 7.37427 8.93349 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.004048 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.103837 B = 6915.439267 C = 7861.461850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.037 3.963 3 N -0.542 5.542 4 C 0.037 3.963 5 C -0.132 4.132 6 C -0.117 4.117 7 C 0.054 3.946 8 H 0.084 0.916 9 C 0.135 3.865 10 N -0.712 5.712 11 C 0.484 3.516 12 O -0.585 6.585 13 C 0.084 3.916 14 H 0.119 0.881 15 N -0.818 5.818 16 C -0.077 4.077 17 C 0.004 3.996 18 C -0.531 4.531 19 H 0.026 0.974 20 C 0.003 3.997 21 N -0.955 5.955 22 Si 0.954 3.046 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.241 1.241 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.407 0.593 40 H 0.349 0.651 41 H 0.345 0.655 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.025 0.975 45 H 0.027 0.973 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.972 18.690 1.519 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.091 4.091 3 N -0.266 5.266 4 C -0.090 4.090 5 C -0.171 4.171 6 C -0.156 4.156 7 C -0.054 4.054 8 H 0.102 0.898 9 C 0.010 3.990 10 N -0.365 5.365 11 C 0.269 3.731 12 O -0.466 6.466 13 C -0.032 4.032 14 H 0.137 0.863 15 N -0.347 5.347 16 C -0.115 4.115 17 C -0.033 4.033 18 C -0.569 4.569 19 H 0.045 0.955 20 C -0.193 4.193 21 N -0.596 5.596 22 Si 0.778 3.222 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.164 1.164 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.246 0.754 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.911 18.329 1.275 25.658 hybrid contribution -0.585 -0.011 0.239 0.632 sum -18.495 18.318 1.514 26.075 Atomic orbital electron populations 1.22434 0.96293 1.03210 1.02598 1.22413 0.94309 0.89873 1.02531 1.63601 1.58227 1.02241 1.02531 1.22845 0.98984 0.95282 0.91897 1.22741 1.00182 0.97935 0.96212 1.22755 1.02472 0.94093 0.96275 1.23057 0.96246 0.95555 0.90546 0.89816 1.21396 0.99169 0.82574 0.95838 1.46242 1.37641 1.10703 1.41929 1.22393 0.79002 0.92865 0.78835 1.90635 1.47826 1.50018 1.58113 1.21656 1.00353 0.89707 0.91452 0.86349 1.59023 1.07900 1.62767 1.04968 1.21231 0.97986 0.96006 0.96325 1.19361 0.96125 0.92060 0.95801 1.21554 1.32101 0.94155 1.09088 0.95529 1.26008 0.95158 0.98761 0.99387 1.70084 1.41563 1.09996 1.37993 0.85603 0.80499 0.77162 0.78979 1.19785 1.21242 1.16372 0.91325 0.91773 0.91488 0.91484 0.90961 0.91474 0.91706 0.90335 0.89681 0.88699 0.91026 0.91006 0.93127 0.75415 0.83771 0.84128 0.94438 0.91932 0.95707 0.95438 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 9.37 71.99 0.67 -1.86 16 2 C 0.04 0.69 5.71 86.31 0.49 1.18 16 3 N -0.54 -10.36 5.01 -859.68 -4.31 -14.67 16 4 C 0.04 0.58 6.35 86.65 0.55 1.13 16 5 C -0.13 -1.45 6.93 31.78 0.22 -1.23 16 6 C -0.12 -1.46 6.53 32.14 0.21 -1.25 16 7 C 0.05 0.87 2.43 45.55 0.11 0.98 16 8 H 0.08 1.15 5.32 -2.39 -0.01 1.13 16 9 C 0.13 2.91 5.40 86.38 0.47 3.38 16 10 N -0.71 -17.20 5.33 -463.06 -2.47 -19.67 16 11 C 0.48 14.74 7.07 87.66 0.62 15.36 16 12 O -0.59 -21.49 16.22 -3.04 -0.05 -21.54 16 13 C 0.08 2.59 3.15 44.17 0.14 2.73 16 14 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 15 N -0.82 -25.02 8.44 -171.81 -1.45 -26.47 16 16 C -0.08 -3.03 4.78 30.60 0.15 -2.88 16 17 C 0.00 0.19 3.93 29.85 0.12 0.30 16 18 C -0.53 -31.12 9.66 25.60 0.25 -30.87 16 19 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 20 C 0.00 0.18 5.47 84.65 0.46 0.64 16 21 N -0.96 -61.01 13.96 21.44 0.30 -60.71 16 22 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.79 6.65 -2.38 -0.02 0.77 16 28 H 0.07 0.81 5.76 -2.39 -0.01 0.79 16 29 H 0.07 1.36 5.37 -2.39 -0.01 1.35 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 0.91 6.29 -2.39 -0.02 0.90 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.03 8.06 -2.39 -0.02 1.01 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 39 H 0.41 8.51 5.55 -92.70 -0.51 8.00 16 40 H 0.35 8.92 9.06 -89.69 -0.81 8.11 16 41 H 0.35 11.23 8.58 -89.69 -0.77 10.46 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 45 H 0.03 1.30 7.18 -2.39 -0.02 1.28 16 46 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -72.64 354.80 -2.80 -75.44 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -1.16 Total: 33.04 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 4.46 Total: -12.38 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -7.93 Total: -121.52 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -72.64 -2.80 -75.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424133075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.761 kcal (2) G-P(sol) polarization free energy of solvation -72.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds