Wall clock time and date at job start Tue Mar 31 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99893 * 2 1 4 4 C 1.46903 * 111.00286 * 123.95819 * 2 1 3 5 5 H 1.09000 * 109.49604 * 300.06392 * 4 2 1 6 6 C 1.53044 * 109.52410 * 60.14342 * 4 2 1 7 7 C 1.53040 * 109.53431 * 181.33413 * 6 4 2 8 8 C 1.53621 * 109.24391 * 298.50815 * 7 6 4 9 9 N 1.46930 * 108.54199 * 54.86065 * 8 7 6 10 10 C 1.34776 * 120.63217 * 126.36835 * 9 8 7 11 11 O 1.21279 * 120.00032 * 179.72810 * 10 9 8 12 12 C 1.50698 * 119.99790 * 359.71414 * 10 9 8 13 13 H 1.09008 * 109.46977 * 40.00639 * 12 10 9 14 14 N 1.46904 * 109.46837 * 159.99896 * 12 10 9 15 15 C 1.52997 * 109.47721 * 280.00489 * 12 10 9 16 16 C 1.53000 * 109.47060 * 175.00208 * 15 12 10 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 12 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99711 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46794 * 90.00022 * 21 19 17 23 23 H 1.48502 * 109.47140 * 210.00005 * 21 19 17 24 24 H 1.48501 * 109.46982 * 330.00118 * 21 19 17 25 25 C 1.46928 * 118.73614 * 306.09724 * 9 8 7 26 26 H 1.08998 * 109.46863 * 296.04285 * 1 2 3 27 27 H 1.08998 * 109.47484 * 56.04483 * 1 2 3 28 28 H 1.08999 * 109.47135 * 176.04843 * 1 2 3 29 29 H 1.08997 * 109.47070 * 183.95171 * 3 2 1 30 30 H 1.08996 * 109.47139 * 303.95465 * 3 2 1 31 31 H 1.08999 * 109.46759 * 63.96107 * 3 2 1 32 32 H 1.08996 * 109.46021 * 301.35820 * 6 4 2 33 33 H 1.09001 * 109.45724 * 61.31343 * 6 4 2 34 34 H 1.08990 * 109.49841 * 58.58888 * 7 6 4 35 35 H 1.09004 * 109.49111 * 178.65227 * 7 6 4 36 36 H 1.08995 * 109.74234 * 295.12426 * 8 7 6 37 37 H 1.08991 * 109.66452 * 174.54978 * 8 7 6 38 38 H 1.00898 * 111.00551 * 296.05373 * 14 12 10 39 39 H 1.00898 * 110.99372 * 60.01160 * 14 12 10 40 40 H 1.09002 * 109.47153 * 54.99889 * 15 12 10 41 41 H 1.09001 * 109.46832 * 295.00079 * 15 12 10 42 42 H 1.09001 * 109.47194 * 299.99650 * 16 15 12 43 43 H 1.08992 * 109.47399 * 59.99823 * 16 15 12 44 44 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 45 45 H 1.09005 * 109.58661 * 173.65149 * 25 9 8 46 46 H 1.09003 * 109.58147 * 293.92348 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 1.6453 -0.3212 2.0690 6 6 1.5084 -2.2142 1.0483 7 6 2.0294 -3.0044 2.2509 8 6 3.5654 -3.0089 2.2268 9 7 4.0360 -1.6182 2.1693 10 6 4.9220 -1.1552 3.0732 11 8 5.3065 -0.0065 3.0121 12 6 5.4348 -2.0646 4.1599 13 1 5.6132 -3.0580 3.7482 14 7 6.6906 -1.5248 4.6981 15 6 4.3971 -2.1559 5.2806 16 6 4.8614 -3.1743 6.3238 17 6 3.8389 -3.2646 7.4273 18 1 2.9475 -2.6562 7.3885 19 6 4.0417 -4.1240 8.4862 20 7 3.1497 -4.2024 9.4494 21 14 5.5833 -5.1769 8.5528 22 1 6.6557 -4.4396 9.2680 23 1 5.2879 -6.4421 9.2720 24 1 6.0317 -5.4859 7.1712 25 6 3.5268 -0.7436 1.1042 26 1 -0.3633 0.4512 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0708 30 1 1.5897 1.9163 -0.8524 31 1 1.7044 1.8722 0.9234 32 1 0.4186 -2.2313 1.0470 33 1 1.8796 -2.6660 0.1284 34 1 1.6790 -2.5385 3.1718 35 1 1.6624 -4.0294 2.1992 36 1 3.9183 -3.5505 1.3492 37 1 3.9450 -3.4860 3.1302 38 1 7.4117 -1.5148 3.9925 39 1 6.5514 -0.6039 5.0860 40 1 3.4403 -2.4719 4.8649 41 1 4.2840 -1.1793 5.7514 42 1 4.9745 -4.1508 5.8530 43 1 5.8181 -2.8583 6.7394 44 1 3.2922 -4.8073 10.1942 45 1 3.8810 0.2744 1.2667 46 1 3.8787 -1.1028 0.1371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424151675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:30 Heat of formation + Delta-G solvation = -36.070941 kcal Electronic energy + Delta-G solvation = -23657.512951 eV Core-core repulsion = 20388.688772 eV Total energy + Delta-G solvation = -3268.824179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51780 -38.59181 -36.15105 -35.42862 -32.77643 -32.54953 -30.59622 -30.40821 -28.15652 -26.95505 -25.22315 -24.67107 -22.86995 -22.05602 -20.38786 -20.17603 -18.86839 -17.49183 -16.72668 -16.21840 -15.84408 -15.51680 -15.23278 -15.09796 -14.60422 -14.38387 -14.13479 -13.91213 -13.74750 -13.19930 -13.06944 -12.94210 -12.60565 -12.46249 -12.34223 -12.06766 -11.85092 -11.65884 -11.60932 -11.06225 -11.05891 -10.89564 -10.86062 -10.58527 -10.29459 -9.98790 -9.71931 -9.59293 -9.12539 -8.70474 -8.64024 -8.51704 -8.38874 -6.00309 -3.97942 2.65995 2.93366 3.36963 3.43572 3.48665 3.71113 4.41079 4.50527 4.63669 4.74247 4.78930 4.87643 4.90126 4.94491 5.12411 5.14594 5.24607 5.30745 5.33924 5.36751 5.40883 5.43660 5.59291 5.62813 5.64239 5.66973 5.71995 5.78394 5.85702 5.89180 6.13624 6.29849 6.37197 6.48121 6.72577 6.79078 6.86011 7.23580 7.36840 7.42532 7.56039 7.66269 7.85434 8.20376 8.57096 9.04267 9.62764 11.13187 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.004132 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.884551 B = 6775.112917 C = 7396.866998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.541 5.541 3 C 0.018 3.982 4 C 0.070 3.930 5 H 0.047 0.953 6 C -0.112 4.112 7 C -0.136 4.136 8 C 0.100 3.900 9 N -0.610 5.610 10 C 0.487 3.513 11 O -0.554 6.554 12 C 0.074 3.926 13 H 0.099 0.901 14 N -0.811 5.811 15 C -0.088 4.088 16 C -0.004 4.004 17 C -0.521 4.521 18 H 0.068 0.932 19 C 0.066 3.934 20 N -0.906 5.906 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.264 1.264 25 C 0.116 3.884 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.335 0.665 39 H 0.349 0.651 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.013 0.987 43 H 0.029 0.971 44 H 0.262 0.738 45 H 0.089 0.911 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 4.777 -21.167 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.130 4.130 4 C -0.039 4.039 5 H 0.065 0.935 6 C -0.150 4.150 7 C -0.174 4.174 8 C -0.023 4.023 9 N -0.344 5.344 10 C 0.274 3.726 11 O -0.432 6.432 12 C -0.041 4.041 13 H 0.116 0.884 14 N -0.339 5.339 15 C -0.127 4.127 16 C -0.041 4.041 17 C -0.559 4.559 18 H 0.086 0.914 19 C -0.135 4.135 20 N -0.546 5.546 21 Si 0.710 3.290 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.189 1.189 25 C -0.007 4.007 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.147 0.853 39 H 0.163 0.837 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.108 0.892 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.902 4.456 -20.936 21.490 hybrid contribution 0.150 0.612 0.115 0.641 sum -1.752 5.068 -20.822 21.501 Atomic orbital electron populations 1.22433 0.87155 1.02527 1.00533 1.62003 1.08074 1.13775 1.42696 1.22462 1.01196 0.88696 1.00620 1.22017 0.95076 0.94841 0.92006 0.93521 1.21620 1.00762 0.93707 0.98891 1.22007 0.95053 1.01353 0.99035 1.22007 0.94830 0.81896 1.03520 1.48207 1.44082 1.12365 1.29708 1.22633 0.78083 0.89381 0.82460 1.90632 1.58997 1.19256 1.74336 1.21890 0.92525 0.96870 0.92855 0.88350 1.59051 1.06199 1.31582 1.37080 1.21506 0.94969 1.01847 0.94334 1.19481 0.97561 0.93258 0.93802 1.21165 1.06370 1.23770 1.04560 0.91362 1.25011 0.96370 0.96760 0.95326 1.69924 1.35354 1.38403 1.10884 0.86741 0.83827 0.79844 0.78627 1.20292 1.21711 1.18865 1.21555 0.92261 0.96297 0.90579 0.95537 0.91353 0.90870 0.90951 0.91282 0.95426 0.91435 0.90937 0.90795 0.89910 0.91220 0.88271 0.85318 0.83653 0.92059 0.92307 0.96921 0.95234 0.92840 0.89250 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.22 60.06 0.55 0.73 16 2 N -0.54 -5.34 4.89 -243.04 -1.19 -6.53 16 3 C 0.02 0.17 9.11 60.06 0.55 0.72 16 4 C 0.07 0.76 2.09 -67.59 -0.14 0.62 16 5 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 6 C -0.11 -1.07 4.97 -26.69 -0.13 -1.20 16 7 C -0.14 -1.40 6.10 -26.39 -0.16 -1.56 16 8 C 0.10 1.10 5.79 -3.49 -0.02 1.08 16 9 N -0.61 -7.98 2.97 -172.51 -0.51 -8.49 16 10 C 0.49 7.67 6.94 -10.99 -0.08 7.59 16 11 O -0.55 -10.15 15.66 5.56 0.09 -10.07 16 12 C 0.07 1.19 2.29 -68.86 -0.16 1.03 16 13 H 0.10 1.44 6.79 -51.92 -0.35 1.09 16 14 N -0.81 -12.88 8.44 -5.65 -0.05 -12.93 16 15 C -0.09 -1.70 4.46 -26.73 -0.12 -1.82 16 16 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 17 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 18 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -27.99 13.96 55.43 0.77 -27.22 16 21 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 25 C 0.12 1.40 5.15 -3.71 -0.02 1.38 16 26 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 28 H 0.07 0.56 6.28 -51.93 -0.33 0.24 16 29 H 0.07 0.68 6.37 -51.93 -0.33 0.35 16 30 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.60 6.34 -51.93 -0.33 0.27 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.18 4.85 -51.93 -0.25 0.93 16 38 H 0.34 4.59 9.06 -39.29 -0.36 4.24 16 39 H 0.35 5.70 8.58 -39.29 -0.34 5.36 16 40 H 0.06 1.13 6.99 -51.93 -0.36 0.77 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 43 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.09 1.22 5.56 -51.93 -0.29 0.93 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -32.42 350.31 -8.46 -40.87 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.92 Total: 6.70 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.27 Total: -4.82 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.97 Total: -55.16 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.42 -8.46 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.804 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds