Wall clock time and date at job start Tue Mar 31 2020 02:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99893 * 2 1 4 4 C 1.46903 * 111.00286 * 123.95819 * 2 1 3 5 5 H 1.09000 * 109.49604 * 300.06392 * 4 2 1 6 6 C 1.53044 * 109.52410 * 60.14342 * 4 2 1 7 7 C 1.53040 * 109.53431 * 181.33413 * 6 4 2 8 8 C 1.53621 * 109.24391 * 298.50815 * 7 6 4 9 9 N 1.46930 * 108.54199 * 54.86065 * 8 7 6 10 10 C 1.34776 * 120.63217 * 126.36835 * 9 8 7 11 11 O 1.21279 * 120.00032 * 179.72810 * 10 9 8 12 12 C 1.50698 * 119.99790 * 359.71414 * 10 9 8 13 13 H 1.09008 * 109.46977 * 40.00639 * 12 10 9 14 14 N 1.46904 * 109.46837 * 159.99896 * 12 10 9 15 15 C 1.52997 * 109.47721 * 280.00489 * 12 10 9 16 16 C 1.53000 * 109.47060 * 175.00208 * 15 12 10 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 12 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99711 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46794 * 90.00022 * 21 19 17 23 23 H 1.48502 * 109.47140 * 210.00005 * 21 19 17 24 24 H 1.48501 * 109.46982 * 330.00118 * 21 19 17 25 25 C 1.46928 * 118.73614 * 306.09724 * 9 8 7 26 26 H 1.08998 * 109.46863 * 296.04285 * 1 2 3 27 27 H 1.08998 * 109.47484 * 56.04483 * 1 2 3 28 28 H 1.08999 * 109.47135 * 176.04843 * 1 2 3 29 29 H 1.08997 * 109.47070 * 183.95171 * 3 2 1 30 30 H 1.08996 * 109.47139 * 303.95465 * 3 2 1 31 31 H 1.08999 * 109.46759 * 63.96107 * 3 2 1 32 32 H 1.08996 * 109.46021 * 301.35820 * 6 4 2 33 33 H 1.09001 * 109.45724 * 61.31343 * 6 4 2 34 34 H 1.08990 * 109.49841 * 58.58888 * 7 6 4 35 35 H 1.09004 * 109.49111 * 178.65227 * 7 6 4 36 36 H 1.08995 * 109.74234 * 295.12426 * 8 7 6 37 37 H 1.08991 * 109.66452 * 174.54978 * 8 7 6 38 38 H 1.00898 * 111.00551 * 296.05373 * 14 12 10 39 39 H 1.00898 * 110.99372 * 60.01160 * 14 12 10 40 40 H 1.09002 * 109.47153 * 54.99889 * 15 12 10 41 41 H 1.09001 * 109.46832 * 295.00079 * 15 12 10 42 42 H 1.09001 * 109.47194 * 299.99650 * 16 15 12 43 43 H 1.08992 * 109.47399 * 59.99823 * 16 15 12 44 44 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 45 45 H 1.09005 * 109.58661 * 173.65149 * 25 9 8 46 46 H 1.09003 * 109.58147 * 293.92348 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 1.6453 -0.3212 2.0690 6 6 1.5084 -2.2142 1.0483 7 6 2.0294 -3.0044 2.2509 8 6 3.5654 -3.0089 2.2268 9 7 4.0360 -1.6182 2.1693 10 6 4.9220 -1.1552 3.0732 11 8 5.3065 -0.0065 3.0121 12 6 5.4348 -2.0646 4.1599 13 1 5.6132 -3.0580 3.7482 14 7 6.6906 -1.5248 4.6981 15 6 4.3971 -2.1559 5.2806 16 6 4.8614 -3.1743 6.3238 17 6 3.8389 -3.2646 7.4273 18 1 2.9475 -2.6562 7.3885 19 6 4.0417 -4.1240 8.4862 20 7 3.1497 -4.2024 9.4494 21 14 5.5833 -5.1769 8.5528 22 1 6.6557 -4.4396 9.2680 23 1 5.2879 -6.4421 9.2720 24 1 6.0317 -5.4859 7.1712 25 6 3.5268 -0.7436 1.1042 26 1 -0.3633 0.4512 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0708 30 1 1.5897 1.9163 -0.8524 31 1 1.7044 1.8722 0.9234 32 1 0.4186 -2.2313 1.0470 33 1 1.8796 -2.6660 0.1284 34 1 1.6790 -2.5385 3.1718 35 1 1.6624 -4.0294 2.1992 36 1 3.9183 -3.5505 1.3492 37 1 3.9450 -3.4860 3.1302 38 1 7.4117 -1.5148 3.9925 39 1 6.5514 -0.6039 5.0860 40 1 3.4403 -2.4719 4.8649 41 1 4.2840 -1.1793 5.7514 42 1 4.9745 -4.1508 5.8530 43 1 5.8181 -2.8583 6.7394 44 1 3.2922 -4.8073 10.1942 45 1 3.8810 0.2744 1.2667 46 1 3.8787 -1.1028 0.1371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424151675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:29 Heat of formation + Delta-G solvation = -60.765880 kcal Electronic energy + Delta-G solvation = -23658.583804 eV Core-core repulsion = 20388.688772 eV Total energy + Delta-G solvation = -3269.895032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63085 -39.58307 -37.11658 -36.91145 -34.80089 -33.49524 -32.30424 -31.42084 -28.95105 -28.45732 -26.44333 -25.62296 -24.28840 -22.91700 -22.02415 -21.24159 -20.00164 -18.91675 -18.54193 -17.35790 -17.00402 -16.60288 -16.28920 -16.06712 -15.95556 -15.67298 -15.31322 -15.11669 -14.79334 -14.70270 -14.18498 -14.15547 -13.95136 -13.76502 -13.52640 -13.20417 -12.82859 -12.78369 -12.68316 -12.45539 -12.43661 -11.99803 -11.86275 -11.84813 -11.69775 -11.61158 -11.44286 -11.26574 -11.10729 -10.70700 -9.74269 -9.69972 -9.45881 -8.24327 -6.27715 1.41464 1.42965 1.43816 1.56462 1.88529 2.42139 2.91041 3.12512 3.37317 3.58751 3.74136 3.81505 3.95295 4.01450 4.04053 4.17319 4.21924 4.26436 4.39738 4.46744 4.52609 4.60977 4.64146 4.67563 4.73483 4.76562 4.82324 4.92328 4.93144 4.94957 5.04097 5.11105 5.15251 5.33111 5.41824 5.49586 5.64456 5.72563 5.95742 5.97652 6.02524 6.28115 6.32786 6.47674 6.80465 7.00592 7.36860 8.92623 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.004132 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.884551 B = 6775.112917 C = 7396.866998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.018 3.982 4 C 0.074 3.926 5 H 0.018 0.982 6 C -0.105 4.105 7 C -0.134 4.134 8 C 0.095 3.905 9 N -0.604 5.604 10 C 0.485 3.515 11 O -0.586 6.586 12 C 0.085 3.915 13 H 0.121 0.879 14 N -0.817 5.817 15 C -0.078 4.078 16 C 0.005 3.995 17 C -0.530 4.530 18 H 0.026 0.974 19 C 0.004 3.996 20 N -0.955 5.955 21 Si 0.953 3.047 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.239 1.239 25 C 0.119 3.881 26 H 0.017 0.983 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.349 0.651 39 H 0.345 0.655 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.265 0.735 45 H 0.069 0.931 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.208 3.184 -23.629 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.266 5.266 3 C -0.130 4.130 4 C -0.035 4.035 5 H 0.036 0.964 6 C -0.143 4.143 7 C -0.173 4.173 8 C -0.027 4.027 9 N -0.336 5.336 10 C 0.273 3.727 11 O -0.466 6.466 12 C -0.031 4.031 13 H 0.139 0.861 14 N -0.346 5.346 15 C -0.116 4.116 16 C -0.033 4.033 17 C -0.568 4.568 18 H 0.045 0.955 19 C -0.192 4.192 20 N -0.596 5.596 21 Si 0.776 3.224 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.162 1.162 25 C -0.004 4.004 26 H 0.035 0.965 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.033 0.967 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.901 2.851 -23.443 23.633 hybrid contribution -0.289 1.178 0.871 1.494 sum -1.191 4.030 -22.572 22.960 Atomic orbital electron populations 1.22512 0.86095 1.03386 1.00753 1.62068 1.09027 1.13856 1.41620 1.22492 1.01086 0.88635 1.00779 1.21932 0.94313 0.96005 0.91256 0.96433 1.21586 1.01322 0.92319 0.99026 1.22003 0.94615 1.02452 0.98189 1.22236 0.95245 0.80646 1.04581 1.48274 1.42873 1.13441 1.29051 1.22499 0.78573 0.88782 0.82896 1.90620 1.60370 1.20372 1.75259 1.21696 0.91575 0.98192 0.91626 0.86093 1.59048 1.06509 1.31312 1.37747 1.21275 0.96397 0.99403 0.94553 1.19355 0.95732 0.94980 0.93204 1.21523 1.06157 1.22789 1.06332 0.95550 1.25996 1.00032 0.98399 0.94795 1.70082 1.37873 1.39759 1.11913 0.85621 0.79081 0.77729 0.79948 1.19922 1.21260 1.16177 1.21590 0.92948 0.95182 0.90698 0.96455 0.89799 0.89917 0.91363 0.89422 0.96700 0.90557 0.89432 0.93432 0.87812 0.88175 0.89013 0.83749 0.84176 0.91642 0.94634 0.95476 0.95510 0.92654 0.91216 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.22 127.69 1.18 1.48 16 2 N -0.54 -9.92 4.89 -922.85 -4.51 -14.43 16 3 C 0.02 0.32 9.11 127.69 1.16 1.49 16 4 C 0.07 1.56 2.09 44.99 0.09 1.65 16 5 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 6 C -0.10 -1.76 4.97 30.62 0.15 -1.61 16 7 C -0.13 -2.51 6.10 30.82 0.19 -2.32 16 8 C 0.09 1.85 5.79 86.51 0.50 2.35 16 9 N -0.60 -15.01 2.97 -818.09 -2.43 -17.44 16 10 C 0.49 14.92 6.94 87.66 0.61 15.53 16 11 O -0.59 -21.50 15.66 -3.03 -0.05 -21.55 16 12 C 0.08 2.59 2.29 44.17 0.10 2.69 16 13 H 0.12 3.18 6.79 -2.38 -0.02 3.16 16 14 N -0.82 -24.87 8.44 -171.79 -1.45 -26.32 16 15 C -0.08 -3.00 4.46 30.59 0.14 -2.86 16 16 C 0.00 0.22 3.93 29.85 0.12 0.34 16 17 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 18 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 19 C 0.00 0.23 5.47 84.66 0.46 0.70 16 20 N -0.96 -60.32 13.96 21.45 0.30 -60.02 16 21 Si 0.95 44.41 27.47 68.60 1.88 46.29 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 25 C 0.12 2.73 5.15 86.36 0.44 3.17 16 26 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 28 H 0.08 1.08 6.28 -2.39 -0.01 1.07 16 29 H 0.07 1.26 6.37 -2.39 -0.02 1.24 16 30 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.08 1.17 6.34 -2.39 -0.02 1.16 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.96 4.85 -2.39 -0.01 1.95 16 38 H 0.35 8.93 9.06 -89.70 -0.81 8.12 16 39 H 0.34 11.15 8.58 -89.70 -0.77 10.38 16 40 H 0.07 2.43 6.99 -2.39 -0.02 2.41 16 41 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 43 H 0.03 1.24 7.18 -2.39 -0.02 1.23 16 44 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 45 H 0.07 1.90 5.56 -2.38 -0.01 1.89 16 46 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.29 350.31 -1.52 -72.81 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.66 Total: 28.29 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.39 Total: -7.64 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -8.09 Total: -118.21 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -71.29 -1.52 -72.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.048 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds