Wall clock time and date at job start Tue Mar 31 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.57222 * 2 1 4 4 C 1.53117 * 109.52417 * 239.84013 * 2 1 3 5 5 C 1.53033 * 109.28196 * 182.43678 * 4 2 1 6 6 N 1.46850 * 109.52021 * 59.17821 * 5 4 2 7 7 C 1.46845 * 111.19974 * 298.25827 * 6 5 4 8 8 H 1.09002 * 109.46296 * 301.72630 * 7 6 5 9 9 C 1.53003 * 109.46378 * 181.74800 * 7 6 5 10 10 C 1.53035 * 109.52163 * 61.74237 * 7 6 5 11 11 H 1.09001 * 109.50255 * 180.87798 * 10 7 6 12 12 N 1.46506 * 109.50418 * 60.75998 * 10 7 6 13 13 C 1.34783 * 119.99779 * 84.99959 * 12 10 7 14 14 O 1.21280 * 119.99888 * 0.02562 * 13 12 10 15 15 C 1.50697 * 119.99610 * 180.02562 * 13 12 10 16 16 H 1.08993 * 109.47347 * 40.00286 * 15 13 12 17 17 N 1.46899 * 109.46638 * 160.00352 * 15 13 12 18 18 C 1.53003 * 109.47131 * 279.99623 * 15 13 12 19 19 C 1.53000 * 109.47060 * 174.99984 * 18 15 13 20 20 C 1.50698 * 109.46893 * 179.97438 * 19 18 15 21 21 H 1.07996 * 120.00266 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99519 * 179.97438 * 20 19 18 23 23 N 1.31524 * 119.99772 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00286 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47207 * 89.99877 * 24 22 20 26 26 H 1.48501 * 109.47147 * 209.99764 * 24 22 20 27 27 H 1.48505 * 109.47066 * 329.99658 * 24 22 20 28 28 H 1.09007 * 109.46826 * 180.16023 * 1 2 3 29 29 H 1.08998 * 109.47517 * 300.15713 * 1 2 3 30 30 H 1.09000 * 109.47260 * 60.15906 * 1 2 3 31 31 H 1.09008 * 109.50509 * 62.49688 * 4 2 1 32 32 H 1.08999 * 109.53899 * 302.40034 * 4 2 1 33 33 H 1.09007 * 109.46547 * 299.16541 * 5 4 2 34 34 H 1.08998 * 109.46808 * 179.19194 * 5 4 2 35 35 H 1.00895 * 110.99936 * 62.35825 * 6 5 4 36 36 H 1.08998 * 109.46794 * 59.97838 * 9 7 6 37 37 H 1.08992 * 109.47327 * 179.97438 * 9 7 6 38 38 H 1.09002 * 109.46587 * 299.98212 * 9 7 6 39 39 H 0.96992 * 120.00258 * 264.99981 * 12 10 7 40 40 H 1.00901 * 111.00083 * 296.03779 * 17 15 13 41 41 H 1.00890 * 111.00678 * 60.00036 * 17 15 13 42 42 H 1.09002 * 109.47348 * 295.00673 * 18 15 13 43 43 H 1.09004 * 109.46520 * 55.00598 * 18 15 13 44 44 H 1.08999 * 109.47099 * 300.00512 * 19 18 15 45 45 H 1.08999 * 109.47075 * 60.00418 * 19 18 15 46 46 H 0.96998 * 120.00037 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0417 -0.7250 -1.2478 5 6 3.5708 -0.7751 -1.2117 6 7 4.0102 -1.4788 0.0000 7 6 3.5708 -0.7750 1.2116 8 1 3.9675 0.2403 1.2059 9 6 4.0858 -1.5165 2.4469 10 6 2.0417 -0.7249 1.2478 11 1 1.7162 -0.1889 2.1393 12 7 1.5081 -2.0891 1.2742 13 6 1.3853 -2.7421 2.4469 14 8 1.7161 -2.2001 3.4802 15 6 0.8370 -4.1455 2.4740 16 1 1.2336 -4.7069 1.6282 17 7 1.2336 -4.8020 3.7268 18 6 -0.6897 -4.0984 2.3841 19 6 -1.2390 -5.5230 2.2859 20 6 -2.7427 -5.4766 2.1981 21 1 -3.2553 -4.5261 2.2105 22 6 -3.4639 -6.6477 2.1007 23 7 -4.7763 -6.6072 2.0235 24 14 -2.5773 -8.2916 2.0784 25 1 -2.4264 -8.7916 3.4686 26 1 -3.3650 -9.2682 1.2840 27 1 -1.2355 -8.1222 1.4649 28 1 -0.3633 -1.0277 0.0029 29 1 -0.3634 0.5162 0.8885 30 1 -0.3634 0.5114 -0.8914 31 1 1.7161 -0.1890 -2.1394 32 1 1.6447 -1.7400 -1.2681 33 1 3.9674 0.2402 -1.2060 34 1 3.9378 -1.3034 -2.0916 35 1 3.6876 -2.4348 0.0000 36 1 5.1749 -1.5519 2.4216 37 1 3.7601 -0.9940 3.3463 38 1 3.6893 -2.5318 2.4527 39 1 1.2433 -2.5224 0.4478 40 1 2.2361 -4.9034 3.7803 41 1 0.8778 -4.3002 4.5265 42 1 -1.0913 -3.6146 3.2744 43 1 -0.9842 -3.5337 1.4995 44 1 -0.8373 -6.0067 1.3956 45 1 -0.9444 -6.0877 3.1705 46 1 -5.2837 -7.4310 1.9554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424162410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:51 Heat of formation + Delta-G solvation = -57.847101 kcal Electronic energy + Delta-G solvation = -23900.447786 eV Core-core repulsion = 20630.679322 eV Total energy + Delta-G solvation = -3269.768465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88045 -38.74373 -35.36808 -34.41335 -33.66384 -32.77527 -31.39216 -30.50102 -27.57007 -27.28802 -26.20269 -23.65165 -22.88598 -21.25243 -20.74844 -19.98283 -19.74868 -17.39509 -16.71961 -16.43193 -15.91960 -15.76571 -15.30989 -14.87334 -14.46454 -14.19565 -14.08557 -13.97844 -13.51365 -13.35342 -12.98436 -12.63852 -12.54853 -12.37346 -12.17260 -11.86394 -11.76419 -11.72458 -11.44904 -11.26022 -11.01503 -10.98067 -10.88242 -10.55004 -10.30893 -10.02250 -9.72665 -9.60111 -9.39769 -9.13080 -8.52205 -8.43527 -8.38851 -6.00889 -3.98569 2.70412 3.18351 3.36412 3.42974 3.48103 4.00432 4.28716 4.41593 4.49973 4.60496 4.73459 4.76221 4.94882 5.01062 5.08958 5.20004 5.33064 5.33320 5.36695 5.38012 5.45165 5.52540 5.62176 5.64257 5.66511 5.75404 5.83689 5.87280 5.95658 6.08594 6.21630 6.27767 6.41624 6.46443 6.80477 6.85556 7.11623 7.24105 7.36551 7.49366 7.56540 7.65282 7.84982 8.26208 8.56437 9.03684 9.62165 11.12623 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.004227 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.486483 B = 6622.619397 C = 7131.341770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.156 4.156 5 C 0.056 3.944 6 N -0.679 5.679 7 C 0.076 3.924 8 H 0.084 0.916 9 C -0.135 4.135 10 C 0.115 3.885 11 H 0.089 0.911 12 N -0.722 5.722 13 C 0.486 3.514 14 O -0.545 6.545 15 C 0.074 3.926 16 H 0.095 0.905 17 N -0.811 5.811 18 C -0.086 4.086 19 C -0.004 4.004 20 C -0.521 4.521 21 H 0.068 0.932 22 C 0.066 3.934 23 N -0.907 5.907 24 Si 0.883 3.117 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.265 1.265 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.340 0.660 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.398 0.602 40 H 0.335 0.665 41 H 0.350 0.650 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.012 0.988 45 H 0.029 0.971 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.819 12.992 -6.168 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.195 4.195 5 C -0.074 4.074 6 N -0.308 5.308 7 C -0.036 4.036 8 H 0.102 0.898 9 C -0.192 4.192 10 C 0.008 3.992 11 H 0.107 0.893 12 N -0.376 5.376 13 C 0.271 3.729 14 O -0.422 6.422 15 C -0.041 4.041 16 H 0.113 0.887 17 N -0.339 5.339 18 C -0.124 4.124 19 C -0.041 4.041 20 C -0.559 4.559 21 H 0.086 0.914 22 C -0.135 4.135 23 N -0.546 5.546 24 Si 0.710 3.290 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.189 1.189 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.158 0.842 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.234 0.766 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.030 0.970 45 H 0.048 0.952 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.111 12.916 -5.678 22.958 hybrid contribution -0.402 -0.298 -0.308 0.588 sum 17.709 12.618 -5.986 22.553 Atomic orbital electron populations 1.21823 0.94090 1.02747 1.01887 1.21428 0.96710 0.99583 0.93930 0.90028 1.22366 0.97882 1.01082 0.98193 1.22044 0.92428 0.99862 0.93090 1.60721 1.62829 1.05996 1.01302 1.21962 0.92074 0.98786 0.90734 0.89782 1.21814 1.00260 1.00762 0.96378 1.21713 0.94640 0.83753 0.99079 0.89281 1.46214 1.65893 1.15641 1.09825 1.22514 0.76784 0.90286 0.83277 1.90658 1.49833 1.68967 1.32731 1.21846 0.99408 0.87716 0.95171 0.88720 1.59013 1.16851 1.54478 1.03537 1.21447 0.88212 1.01446 1.01303 1.19478 0.96164 0.91459 0.97035 1.21174 0.89868 0.94550 1.50345 0.91367 1.25018 0.94670 0.99230 0.94575 1.69928 1.05628 1.27859 1.51162 0.86730 0.80088 0.83706 0.78438 1.20260 1.21714 1.18932 0.92009 0.92449 0.92453 0.90948 0.91798 0.90944 0.90610 0.84169 0.92871 0.91415 0.92814 0.76616 0.85356 0.83613 0.92289 0.92397 0.96990 0.95243 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.02 37.16 0.34 -1.05 16 2 C -0.10 -0.80 2.58 -90.50 -0.23 -1.04 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.16 -1.12 5.18 -26.65 -0.14 -1.26 16 5 C 0.06 0.41 6.55 -3.83 -0.03 0.38 16 6 N -0.68 -6.03 6.49 -106.76 -0.69 -6.72 16 7 C 0.08 0.73 2.84 -67.72 -0.19 0.53 16 8 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 9 C -0.13 -1.50 7.98 37.16 0.30 -1.20 16 10 C 0.12 1.15 2.02 -67.85 -0.14 1.01 16 11 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 12 N -0.72 -7.83 3.57 -53.72 -0.19 -8.03 16 13 C 0.49 6.68 5.40 -10.98 -0.06 6.62 16 14 O -0.54 -8.73 13.38 5.56 0.07 -8.66 16 15 C 0.07 1.12 3.15 -68.87 -0.22 0.90 16 16 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 17 N -0.81 -12.27 8.44 -5.66 -0.05 -12.32 16 18 C -0.09 -1.62 4.78 -26.73 -0.13 -1.74 16 19 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 20 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 21 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 22 C 0.07 1.92 5.47 -17.81 -0.10 1.83 16 23 N -0.91 -28.10 13.96 55.43 0.77 -27.32 16 24 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 28 H 0.06 0.65 7.29 -51.92 -0.38 0.27 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.06 0.49 6.68 -51.93 -0.35 0.14 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.34 3.10 8.24 -39.29 -0.32 2.78 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 38 H 0.05 0.66 5.80 -51.93 -0.30 0.36 16 39 H 0.40 3.91 6.66 -40.82 -0.27 3.64 16 40 H 0.33 4.36 9.06 -39.29 -0.36 4.01 16 41 H 0.35 5.46 8.58 -39.30 -0.34 5.13 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 45 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -31.28 350.24 -8.59 -39.88 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -8.08 Total: 10.93 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.04 Total: -10.34 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.16 Total: -54.39 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.28 -8.59 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424162410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.972 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds